Rw6G007620

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000022
Physical Location & Seq
Forward (+)
12572433 .. 12574143
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G007620.1

Sequence Viewer

Length: 1662 bp
ATGGAGGAGTCGCTGGTGGAGTTAGCCAAGAAATTGGCTTTGAATGAGATAGAAAATCATGAGATCATCCAGATCGAAGATGCACAGGTGGCTCAGAAGTTCTGGATGGTTGGGAAGTTGTTCACAAAAAAGGGGTTTAACTTTGAGGCCTTGAAAGGGACGATGAAGAAGTTATGGGCGGTGAAGGAAGAGATATCTATTTTTCAATGGGAGAGAACAGATCGCATTCTCTTTACGTTCACCTCTGATGCAGATCGGAGGAAAGTGTTATGGGGGAGCCCATGGACTTTCGATCATGCACTATTGCTGTTGACAGCAACAGATGGAAAATCGGACCCAACGGGGGTGTCACTGGACACTCAACCATTCTGGATTCGGGCGAGAGGAATCCCCCCGGCCTTTCTAACAAAGAATTTGGCAGAGCGCATTGGACGTCAACTGGGGATTTATTACCCGAAGCGAGGCGGTGGTGGAGGGGATTGCTGTGGGAGTTTTCTTCGTATTAGAGTCGGTCTGTCGGTGACGCAACCTTTGCGAAAGTGGGTGATGATATCCCTGGCTCCAGGGATGCTGGCACAAAAAATTGTGTTAGAATATGAGCATCTACCTTATTTTTGCTTCTATTGTGGTTTAATGGACCATGTCAGTTCGAATTGCAAATTAGTTCAAGAAAAGTTGGTCTCGGAAGTCCGATATGGGCGATGGAAGACACTGGTGGCAGATGTGTATAGTATCGAACCAAATGGTCAATCACAAGGGAAGTCGTTTGGTCTGCGGCCAAAGCGAAGTCAATGGTCTTTGATTGCACCGGAGTTTGGTGGTTTGGGCACAGTGAGAAACAGGGAGGATTTTGAGCAAAATGTTAATGAGTCCTTGGTAGCTATGGAAGTTGAGGGGGGGACCGGGGAGGAAGAAGCGACGGTGGATGAATCCCAGGCAGCGAAGAAACGGCGGTTTACGGTGGACAAGATGGAGGTTGCTGCTGATCCGAGTTTCACGGCGATCGAAAATTTCTCTTTAAAAACTTTTATTGCACCGGATTTTCAGAAACAGAAGTTGCCAGCAATCAATCACGATAAGTTAGGGGGCCGACGAGGCGGGAAAAAGGGAAAAGAAAGCATTTTAAATTTAGTGGATCTTCGGGGGGAAAAGTCGAAGCCTGGTTTTGGGCCTCTTGCTGCCAAGCCCATAGCGGATGATAAAAAAGCATTAGAAGTGGCTGGGCCTTTGATTAGCCCAATTTGGACGTTAGTTGAGAACAAGTCTAAAATTAAAAGTTGTGGTTCCAAGGGGACTGTGGCTACCGTTTCGGGGTCAGAGAAACAGATCAAGGCAGATGATGGCTCTGGAGCGGAGAAGGCTGCACCAATCCAATCGGTTGCGGCCAAAGAAGGGAAAGATGGGACGAAGGAAAAGAATACTAGGCGGAAGGCTGAGAACACGAGGCCTGCCAGAGGACGGGGAAGAGGCTTTGCAGTCGGTGCGGCTGCTGCTCGTGCTCGAAGGTGCTATCTGGATACAAGCTCCAAACCAGGGCCCATCACGAGCAATGATTGGCGTATGTTGGAATGTGCGGGGATTGGGGAACCCGCACACATTCCGTACTCTGAAGAATTTTCTTCAGAATCAAGACCCCGACTTGGTGTTCCTGATGGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

553

Amino Acids

61.0

Weight (kDa)

9.25

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 33 - 105 4.4e-08 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 173 - 220 1.4e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 436
AccBSI CCGCTC 1 cut(s) 1352
AclWI GGATC 2 cut(s) 980, 1143
AcoI YGGCCR 2 cut(s) 776, 1383
AcsI RAATTY 4 cut(s) 412, 1009, 1126, 1613
AcuI CTGAAG 2 cut(s) 1605, 1629
AcyI GRCGYC 1 cut(s) 433
AfaI GTAC 1 cut(s) 1604
AgsI TTSAA 4 cut(s) 43, 154, 206, 668
AjnI CCWGG 5 cut(s) 555, 562, 933, 1159, 1531
AluBI AGCT 2 cut(s) 881, 1524
AluI AGCT 2 cut(s) 881, 1524
Alw21I GWGCWC 1 cut(s) 1501
Alw26I GTCTC 1 cut(s) 685
AlwI GGATC 2 cut(s) 980, 1143
AoxI GGCC 9 cut(s) 147, 396, 776, 1087, 1169, 1223, 1383, 1445, 1535
ApaI GGGCCC 1 cut(s) 1539
ApeKI GCWGC 6 cut(s) 938, 980, 1178, 1361, 1487, 1490
ApoI RAATTY 4 cut(s) 412, 1009, 1126, 1613
ArsI GACNNNNNNTTYG 2 cut(s) 514, 546
Asp700I GAANNNNTTC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 8 cut(s) 334, 637, 900, 1087, 1169, 1223, 1535, 1536
AsuC2I CCSGG 2 cut(s) 395, 904
AsuHPI GGTGA 4 cut(s) 193, 232, 532, 556
AsuII TTCGAA 1 cut(s) 650
AvaII GGWCC 3 cut(s) 334, 637, 900
BaeGI GKGCMC 2 cut(s) 830, 1539
BanII GRGCYC 2 cut(s) 281, 1539
BauI CACGAG 3 cut(s) 1441, 1494, 1543
BbsI GAAGAC 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 1501
BbvI GCAGC 6 cut(s) 950, 967, 1165, 1348, 1474, 1477
BccI CCATC 8 cut(s) 100, 317, 696, 964, 1334, 1394, 1547, 1646
BceAI ACGGC 2 cut(s) 965, 1014
BciT130I CCWGG 5 cut(s) 557, 564, 935, 1161, 1533
BciVI GTATCC 1 cut(s) 1510
BcnI CCSGG 2 cut(s) 395, 904
BcoDI GTCTC 1 cut(s) 685
BfaI CTAG 1 cut(s) 1422
BfuI GTATCC 1 cut(s) 1510
BglI GCCNNNNNGGC 1 cut(s) 1095
BisI GCNGC 9 cut(s) 776, 939, 981, 1179, 1362, 1383, 1485, 1488, 1491
BlsI GCNGC 9 cut(s) 777, 940, 982, 1180, 1363, 1384, 1486, 1489, 1492
Bme1390I CCNGG 7 cut(s) 395, 557, 564, 904, 935, 1161, 1533
Bme18I GGWCC 3 cut(s) 334, 637, 900
BmgT120I GGNCC 8 cut(s) 334, 637, 900, 1087, 1169, 1223, 1535, 1536
BmiI GGNNCC 8 cut(s) 278, 336, 561, 901, 1088, 1285, 1537, 1587
BmrFI CCNGG 7 cut(s) 395, 557, 564, 904, 935, 1161, 1533
BmrI ACTGGG 1 cut(s) 449
BmsI GCATC 4 cut(s) 70, 238, 558, 610
BmuI ACTGGG 1 cut(s) 449
BpiI GAAGAC 1 cut(s) 713
BpmI CTGGAG 2 cut(s) 546, 1368
Bpu14I TTCGAA 1 cut(s) 650
BpuMI CCSGG 2 cut(s) 395, 904
BsaBI GATNNNNATC 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 433
BsaI GGTCTC 1 cut(s) 685
BsaJI CCNNGG 9 cut(s) 281, 393, 555, 563, 873, 903, 933, 1287, 1532
BsaWI WCCGGW 2 cut(s) 808, 1036
Bse1I ACTGG 3 cut(s) 357, 444, 717
Bse3DI GCAATG 1 cut(s) 1555
Bse8I GATNNNNATC 1 cut(s) 252
BseBI CCWGG 5 cut(s) 557, 564, 935, 1161, 1533
BseDI CCNNGG 9 cut(s) 281, 393, 555, 563, 873, 903, 933, 1287, 1532
BseGI GGATG 5 cut(s) 66, 111, 573, 931, 1201
BseJI GATNNNNATC 1 cut(s) 252
BseMI GCAATG 1 cut(s) 1555
BseMII CTCAG 2 cut(s) 107, 1425
BseNI ACTGG 3 cut(s) 357, 444, 717
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 2 cut(s) 830, 1539
BseXI GCAGC 6 cut(s) 950, 967, 1165, 1348, 1474, 1477
BseYI CCCAGC 1 cut(s) 1220
BsgI GTGCAG 1 cut(s) 1347
Bsh1285I CGRYCG 1 cut(s) 1005
BshFI GGCC 9 cut(s) 149, 398, 778, 1089, 1171, 1225, 1385, 1447, 1537
BsiEI CGRYCG 1 cut(s) 1005
BsiHKAI GWGCWC 1 cut(s) 1501
BsiSI CCGG 4 cut(s) 395, 809, 903, 1037
BslFI GGGAC 4 cut(s) 172, 913, 1306, 1417
BsmAI GTCTC 1 cut(s) 685
BsmFI GGGAC 4 cut(s) 172, 913, 1306, 1417
BsmI GAATGC 1 cut(s) 225
BsnI GGCC 9 cut(s) 149, 398, 778, 1089, 1171, 1225, 1385, 1447, 1537
Bso31I GGTCTC 1 cut(s) 685
Bsp119I TTCGAA 1 cut(s) 650
Bsp120I GGGCCC 1 cut(s) 1535
Bsp1286I GDGCHC 4 cut(s) 281, 830, 1501, 1539
Bsp143I GATC 9 cut(s) 63, 72, 220, 253, 292, 985, 1002, 1135, 1326
Bsp19I CCATGG 1 cut(s) 281
BspANI GGCC 9 cut(s) 149, 398, 778, 1089, 1171, 1225, 1385, 1447, 1537
BspCNI CTCAG 2 cut(s) 106, 1426
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 8 cut(s) 278, 336, 561, 901, 1088, 1285, 1537, 1587
BspPI GGATC 2 cut(s) 980, 1143
BspT104I TTCGAA 1 cut(s) 650
BspTNI GGTCTC 1 cut(s) 685
BsrBI CCGCTC 1 cut(s) 1352
BsrDI GCAATG 1 cut(s) 1555
BsrI ACTGG 3 cut(s) 357, 444, 717
BssECI CCNNGG 9 cut(s) 281, 393, 555, 563, 873, 903, 933, 1287, 1532
BssMI GATC 9 cut(s) 63, 72, 220, 253, 292, 985, 1002, 1135, 1326
BssNI GRCGYC 1 cut(s) 433
BssSI CACGAG 3 cut(s) 1441, 1494, 1543
BssT1I CCWWGG 3 cut(s) 281, 873, 1287
Bst2BI CACGAG 3 cut(s) 1441, 1494, 1543
Bst2UI CCWGG 5 cut(s) 557, 564, 935, 1161, 1533
Bst4CI ACNGT 5 cut(s) 832, 922, 961, 1297, 1306
Bst6I CTCTTC 2 cut(s) 183, 1459
BstACI GRCGYC 1 cut(s) 433
BstAPI GCANNNNNTGC 2 cut(s) 532, 1481
BstBI TTCGAA 1 cut(s) 650
BstC8I GCNNGC 3 cut(s) 573, 1062, 1449
BstDEI CTNAG 2 cut(s) 93, 1434
BstDSI CCRYGG 1 cut(s) 281
BstENI CCTNNNNNAGG 1 cut(s) 1452
BstF5I GGATG 5 cut(s) 66, 111, 573, 931, 1201
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 9 cut(s) 66, 75, 223, 256, 295, 988, 1005, 1138, 1329
BstMAI GTCTC 1 cut(s) 685
BstMBI GATC 9 cut(s) 63, 72, 220, 253, 292, 985, 1002, 1135, 1326
BstMCI CGRYCG 1 cut(s) 1005
BstMWI GCNNNNNNNGC 8 cut(s) 89, 532, 781, 1095, 1358, 1481, 1490, 1496
BstNI CCWGG 5 cut(s) 557, 564, 935, 1161, 1533
BstSCI CCNGG 7 cut(s) 393, 555, 562, 902, 933, 1159, 1531
BstSLI GKGCMC 2 cut(s) 830, 1539
BstV1I GCAGC 6 cut(s) 950, 967, 1165, 1348, 1474, 1477
BstV2I GAAGAC 1 cut(s) 713
BstX2I RGATCY 1 cut(s) 1135
BstXI CCANNNNNNTGG 1 cut(s) 34
BstYI RGATCY 1 cut(s) 1135
BsuI GTATCC 1 cut(s) 1510
BsuRI GGCC 9 cut(s) 149, 398, 778, 1089, 1171, 1225, 1385, 1447, 1537
BtgI CCRYGG 1 cut(s) 281
BtgZI GCGATG 1 cut(s) 715
BtsCI GGATG 5 cut(s) 66, 111, 573, 931, 1201
BtsIMutI CAGTG 3 cut(s) 350, 710, 837
Cac8I GCNNGC 3 cut(s) 573, 1062, 1449
CciI TCATGA 1 cut(s) 58
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 8 cut(s) 334, 637, 900, 1087, 1169, 1223, 1535, 1536
CseI GACGC 1 cut(s) 532
Csp6I GTAC 1 cut(s) 1603
CviAII CATG 4 cut(s) 59, 282, 296, 641
CviQI GTAC 1 cut(s) 1603
DdeI CTNAG 2 cut(s) 93, 1434
DpnI GATC 9 cut(s) 65, 74, 222, 255, 294, 987, 1004, 1137, 1328
DpnII GATC 9 cut(s) 63, 72, 220, 253, 292, 985, 1002, 1135, 1326
DraI TTTAAA 2 cut(s) 1020, 1125
EaeI YGGCCR 2 cut(s) 776, 1383
Eam1104I CTCTTC 2 cut(s) 183, 1459
EarI CTCTTC 2 cut(s) 183, 1459
EciI GGCGGA 1 cut(s) 1441
Eco130I CCWWGG 3 cut(s) 281, 873, 1287
Eco147I AGGCCT 2 cut(s) 149, 1447
Eco24I GRGCYC 2 cut(s) 281, 1539
Eco31I GGTCTC 1 cut(s) 685
Eco32I GATATC 2 cut(s) 195, 552
Eco47I GGWCC 3 cut(s) 334, 637, 900
Eco57I CTGAAG 2 cut(s) 1605, 1629
EcoNI CCTNNNNNAGG 1 cut(s) 1452
EcoO109I RGGNCCY 1 cut(s) 1535
EcoRII CCWGG 5 cut(s) 555, 562, 933, 1159, 1531
EcoRV GATATC 2 cut(s) 195, 552
EcoT14I CCWWGG 3 cut(s) 281, 873, 1287
EcoT38I GRGCYC 2 cut(s) 281, 1539
ErhI CCWWGG 3 cut(s) 281, 873, 1287
FaeI CATG 4 cut(s) 62, 285, 299, 644
FaqI GGGAC 4 cut(s) 172, 913, 1306, 1417
FatI CATG 4 cut(s) 58, 281, 295, 640
FauI CCCGC 3 cut(s) 1091, 1567, 1597
Fnu4HI GCNGC 9 cut(s) 776, 939, 981, 1179, 1362, 1383, 1485, 1488, 1491
FokI GGATG 5 cut(s) 53, 118, 580, 938, 1208
FriOI GRGCYC 2 cut(s) 281, 1539
Fsp4HI GCNGC 9 cut(s) 776, 939, 981, 1179, 1362, 1383, 1485, 1488, 1491
FspBI CTAG 1 cut(s) 1422
GlaI GCGC 1 cut(s) 425
GluI GCNGC 9 cut(s) 776, 939, 981, 1179, 1362, 1383, 1485, 1488, 1491
GsaI CCCAGC 1 cut(s) 1224
GsuI CTGGAG 2 cut(s) 546, 1368
HaeIII GGCC 9 cut(s) 149, 398, 778, 1089, 1171, 1225, 1385, 1447, 1537
HapII CCGG 4 cut(s) 395, 809, 903, 1037
HgaI GACGC 1 cut(s) 532
HhaI GCGC 1 cut(s) 426
Hin1I GRCGYC 1 cut(s) 433
Hin1II CATG 4 cut(s) 62, 285, 299, 644
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HincII GTYRAC 2 cut(s) 312, 437
HindII GTYRAC 2 cut(s) 312, 437
HinfI GANTC 7 cut(s) 8, 373, 387, 507, 869, 929, 1625
HpaII CCGG 4 cut(s) 395, 809, 903, 1037
HphI GGTGA 4 cut(s) 193, 232, 532, 556
Hpy166II GTNNAC 6 cut(s) 123, 240, 312, 437, 957, 964
Hpy8I GTNNAC 6 cut(s) 123, 240, 312, 437, 957, 964
Hpy99I CGWCG 2 cut(s) 922, 1095
HpyAV CCTTC 6 cut(s) 178, 1351, 1385, 1402, 1423, 1497
HpyCH4III ACNGT 5 cut(s) 832, 922, 961, 1297, 1306
HpyCH4IV ACGT 3 cut(s) 236, 433, 1247
HpyCH4V TGCA 8 cut(s) 83, 251, 299, 657, 806, 1034, 1364, 1475
HpyF10VI GCNNNNNNNGC 8 cut(s) 89, 532, 781, 1095, 1358, 1481, 1490, 1496
HpyF3I CTNAG 2 cut(s) 93, 1434
HpySE526I ACGT 3 cut(s) 236, 433, 1247
Hsp92I GRCGYC 1 cut(s) 433
Hsp92II CATG 4 cut(s) 62, 285, 299, 644
HspAI GCGC 1 cut(s) 424
Kzo9I GATC 9 cut(s) 63, 72, 220, 253, 292, 985, 1002, 1135, 1326
LmnI GCTCC 4 cut(s) 276, 565, 1349, 1529
Lsp1109I GCAGC 6 cut(s) 950, 967, 1165, 1348, 1474, 1477
LweI GCATC 4 cut(s) 70, 238, 558, 610
MaeI CTAG 1 cut(s) 1422
MaeII ACGT 3 cut(s) 236, 433, 1247
MaeIII GTNAC 2 cut(s) 348, 520
MalI GATC 9 cut(s) 65, 74, 222, 255, 294, 987, 1004, 1137, 1328
MbiI CCGCTC 1 cut(s) 1352
MboI GATC 9 cut(s) 63, 72, 220, 253, 292, 985, 1002, 1135, 1326
MflI RGATCY 1 cut(s) 1135
MhlI GDGCHC 4 cut(s) 281, 830, 1501, 1539
MlyI GAGTC 3 cut(s) 17, 516, 878
MmeI TCCRAC 1 cut(s) 1545
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 6 cut(s) 138, 632, 864, 1019, 1124, 1272
MspI CCGG 4 cut(s) 395, 809, 903, 1037
MspR9I CCNGG 7 cut(s) 395, 557, 564, 904, 935, 1161, 1533
Mva1269I GAATGC 1 cut(s) 225
MvaI CCWGG 5 cut(s) 557, 564, 935, 1161, 1533
MwoI GCNNNNNNNGC 8 cut(s) 89, 532, 781, 1095, 1358, 1481, 1490, 1496
NciI CCSGG 2 cut(s) 395, 904
NcoI CCATGG 1 cut(s) 281
NdeII GATC 9 cut(s) 63, 72, 220, 253, 292, 985, 1002, 1135, 1326
NlaIII CATG 4 cut(s) 62, 285, 299, 644
NlaIV GGNNCC 8 cut(s) 278, 336, 561, 901, 1088, 1285, 1537, 1587
NmuCI GTSAC 2 cut(s) 348, 520
NspV TTCGAA 1 cut(s) 650
PagI TCATGA 1 cut(s) 58
PceI AGGCCT 2 cut(s) 149, 1447
PctI GAATGC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 4 cut(s) 373, 387, 929, 1625
PflFI GACNNNGTC 1 cut(s) 641
PkrI GCNGC 9 cut(s) 777, 940, 982, 1180, 1363, 1384, 1486, 1489, 1492
Ple19I CGATCG 1 cut(s) 1005
PleI GAGTC 3 cut(s) 16, 515, 877
PpsI GAGTC 3 cut(s) 16, 515, 877
Psp6I CCWGG 5 cut(s) 555, 562, 933, 1159, 1531
PspFI CCCAGC 1 cut(s) 1220
PspGI CCWGG 5 cut(s) 555, 562, 933, 1159, 1531
PspN4I GGNNCC 8 cut(s) 278, 336, 561, 901, 1088, 1285, 1537, 1587
PspOMI GGGCCC 1 cut(s) 1535
PspPI GGNCC 8 cut(s) 334, 637, 900, 1087, 1169, 1223, 1535, 1536
PsuI RGATCY 1 cut(s) 1135
PsyI GACNNNGTC 1 cut(s) 641
PvuI CGATCG 1 cut(s) 1005
RsaI GTAC 1 cut(s) 1604
RsaNI GTAC 1 cut(s) 1603
SaqAI TTAA 6 cut(s) 138, 632, 864, 1019, 1124, 1272
SatI GCNGC 9 cut(s) 776, 939, 981, 1179, 1362, 1383, 1485, 1488, 1491
Sau3AI GATC 9 cut(s) 63, 72, 220, 253, 292, 985, 1002, 1135, 1326
Sau96I GGNCC 8 cut(s) 334, 637, 900, 1087, 1169, 1223, 1535, 1536
SchI GAGTC 3 cut(s) 17, 516, 878
ScrFI CCNGG 7 cut(s) 395, 557, 564, 904, 935, 1161, 1533
SduI GDGCHC 4 cut(s) 281, 830, 1501, 1539
SfaNI GCATC 4 cut(s) 70, 238, 558, 610
SfuI TTCGAA 1 cut(s) 650
SinI GGWCC 3 cut(s) 334, 637, 900
SseBI AGGCCT 2 cut(s) 149, 1447
SspMI CTAG 1 cut(s) 1422
StuI AGGCCT 2 cut(s) 149, 1447
StyD4I CCNGG 7 cut(s) 393, 555, 562, 902, 933, 1159, 1531
StyI CCWWGG 3 cut(s) 281, 873, 1287
TaaI ACNGT 5 cut(s) 832, 922, 961, 1297, 1306
TaiI ACGT 3 cut(s) 239, 436, 1250
TaqI TCGA 7 cut(s) 75, 291, 650, 735, 1005, 1154, 1501
TaqII GACCGA 1 cut(s) 500
TauI GCSGC 3 cut(s) 778, 1385, 1487
TfiI GAWTC 4 cut(s) 373, 387, 929, 1625
Tru1I TTAA 6 cut(s) 138, 632, 864, 1019, 1124, 1272
Tru9I TTAA 6 cut(s) 138, 632, 864, 1019, 1124, 1272
TscAI CASTG 3 cut(s) 357, 717, 837
TseFI GTSAC 2 cut(s) 348, 520
TseI GCWGC 6 cut(s) 938, 980, 1178, 1361, 1487, 1490
Tsp45I GTSAC 2 cut(s) 348, 520
TspDTI ATGAA 2 cut(s) 179, 942
TspGWI ACGGA 1 cut(s) 1590
TspRI CASTG 3 cut(s) 357, 717, 837
Tth111I GACNNNGTC 1 cut(s) 641
VpaK11BI GGWCC 3 cut(s) 334, 637, 900
XagI CCTNNNNNAGG 1 cut(s) 1452
XapI RAATTY 4 cut(s) 412, 1009, 1126, 1613
XcmI CCANNNNNNNNNTGG 1 cut(s) 1294
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 1 cut(s) 1422
ZraI GACGTC 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.