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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 40, 539, 552, 623 |
| AclWI | GGATC | 2 cut(s) | 827, 1064 |
| AcoI | YGGCCR | 2 cut(s) | 73, 988 |
| AcsI | RAATTY | 5 cut(s) | 114, 209, 290, 356, 1134 |
| AcuI | CTGAAG | 1 cut(s) | 1161 |
| AcvI | CACGTG | 1 cut(s) | 776 |
| AfaI | GTAC | 3 cut(s) | 162, 798, 954 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 220, 422 |
| AgeI | ACCGGT | 1 cut(s) | 404 |
| AgsI | TTSAA | 6 cut(s) | 91, 402, 1020, 1030, 1090, 1154 |
| AhlI | ACTAGT | 2 cut(s) | 793, 886 |
| AluBI | AGCT | 2 cut(s) | 109, 462 |
| AluI | AGCT | 2 cut(s) | 109, 462 |
| Alw21I | GWGCWC | 1 cut(s) | 111 |
| Alw26I | GTCTC | 3 cut(s) | 77, 930, 967 |
| AlwI | GGATC | 2 cut(s) | 827, 1064 |
| Ama87I | CYCGRG | 1 cut(s) | 80 |
| AoxI | GGCC | 4 cut(s) | 73, 741, 757, 988 |
| ApeKI | GCWGC | 2 cut(s) | 823, 842 |
| ApoI | RAATTY | 5 cut(s) | 114, 209, 290, 356, 1134 |
| AsiGI | ACCGGT | 1 cut(s) | 404 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 209 |
| AspLEI | GCGC | 1 cut(s) | 270 |
| AspS9I | GGNCC | 4 cut(s) | 29, 742, 758, 1145 |
| AsuC2I | CCSGG | 1 cut(s) | 495 |
| AsuHPI | GGTGA | 1 cut(s) | 569 |
| AsuII | TTCGAA | 1 cut(s) | 1131 |
| AvaI | CYCGRG | 1 cut(s) | 80 |
| AvaII | GGWCC | 2 cut(s) | 29, 1145 |
| AxyI | CCTNAGG | 1 cut(s) | 417 |
| BalI | TGGCCA | 1 cut(s) | 990 |
| BanII | GRGCYC | 1 cut(s) | 111 |
| BbrPI | CACGTG | 1 cut(s) | 776 |
| BbsI | GAAGAC | 2 cut(s) | 327, 1097 |
| Bbv12I | GWGCWC | 1 cut(s) | 111 |
| BbvI | GCAGC | 2 cut(s) | 829, 835 |
| BccI | CCATC | 1 cut(s) | 4 |
| BceAI | ACGGC | 1 cut(s) | 88 |
| BcnI | CCSGG | 1 cut(s) | 495 |
| BcoDI | GTCTC | 3 cut(s) | 77, 930, 967 |
| BcuI | ACTAGT | 2 cut(s) | 793, 886 |
| BfaI | CTAG | 8 cut(s) | 17, 132, 279, 564, 794, 804, 887, 1201 |
| BglII | AGATCT | 1 cut(s) | 150 |
| BisI | GCNGC | 2 cut(s) | 824, 843 |
| BlsI | GCNGC | 2 cut(s) | 825, 844 |
| Bme1390I | CCNGG | 1 cut(s) | 495 |
| Bme18I | GGWCC | 2 cut(s) | 29, 1145 |
| BmeT110I | CYCGRG | 1 cut(s) | 80 |
| BmgT120I | GGNCC | 4 cut(s) | 29, 742, 758, 1145 |
| BmrFI | CCNGG | 1 cut(s) | 495 |
| BmsI | GCATC | 3 cut(s) | 550, 810, 1147 |
| BpiI | GAAGAC | 2 cut(s) | 327, 1097 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 997, 1029 |
| Bpu10I | CCTNAGC | 1 cut(s) | 225 |
| Bpu14I | TTCGAA | 1 cut(s) | 1131 |
| BpuEI | CTTGAG | 1 cut(s) | 300 |
| BpuMI | CCSGG | 1 cut(s) | 495 |
| BsaAI | YACGTR | 1 cut(s) | 776 |
| BsaJI | CCNNGG | 2 cut(s) | 494, 547 |
| BsaWI | WCCGGW | 2 cut(s) | 404, 642 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 220, 422 |
| Bse118I | RCCGGY | 2 cut(s) | 75, 404 |
| Bse21I | CCTNAGG | 1 cut(s) | 417 |
| BseDI | CCNNGG | 2 cut(s) | 494, 547 |
| BseGI | GGATG | 3 cut(s) | 262, 517, 1192 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 220, 422 |
| BseMII | CTCAG | 1 cut(s) | 752 |
| BseRI | GAGGAG | 1 cut(s) | 904 |
| BseX3I | CGGCCG | 1 cut(s) | 73 |
| BseXI | GCAGC | 2 cut(s) | 829, 835 |
| Bsh1285I | CGRYCG | 1 cut(s) | 76 |
| BshFI | GGCC | 4 cut(s) | 75, 743, 759, 990 |
| BshTI | ACCGGT | 1 cut(s) | 404 |
| BsiEI | CGRYCG | 1 cut(s) | 76 |
| BsiHKAI | GWGCWC | 1 cut(s) | 111 |
| BsiHKCI | CYCGRG | 1 cut(s) | 80 |
| BsiSI | CCGG | 4 cut(s) | 76, 405, 494, 643 |
| BslFI | GGGAC | 1 cut(s) | 698 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 220, 422 |
| BsmAI | GTCTC | 3 cut(s) | 77, 930, 967 |
| BsmFI | GGGAC | 1 cut(s) | 698 |
| BsnI | GGCC | 4 cut(s) | 75, 743, 759, 990 |
| BsoBI | CYCGRG | 1 cut(s) | 80 |
| Bsp119I | TTCGAA | 1 cut(s) | 1131 |
| Bsp1286I | GDGCHC | 1 cut(s) | 111 |
| Bsp143I | GATC | 5 cut(s) | 128, 150, 439, 832, 1069 |
| BspACI | CCGC | 4 cut(s) | 40, 539, 552, 623 |
| BspANI | GGCC | 4 cut(s) | 75, 743, 759, 990 |
| BspCNI | CTCAG | 1 cut(s) | 751 |
| BspHI | TCATGA | 1 cut(s) | 919 |
| BspPI | GGATC | 2 cut(s) | 827, 1064 |
| BspQI | GCTCTTC | 2 cut(s) | 99, 469 |
| BspT104I | TTCGAA | 1 cut(s) | 1131 |
| BsrFI | RCCGGY | 2 cut(s) | 75, 404 |
| BssAI | RCCGGY | 2 cut(s) | 75, 404 |
| BssECI | CCNNGG | 2 cut(s) | 494, 547 |
| BssMI | GATC | 5 cut(s) | 128, 150, 439, 832, 1069 |
| BssT1I | CCWWGG | 1 cut(s) | 547 |
| Bst4CI | ACNGT | 6 cut(s) | 195, 310, 615, 635, 670, 973 |
| Bst6I | CTCTTC | 5 cut(s) | 99, 469, 988, 1080, 1155 |
| BstBAI | YACGTR | 1 cut(s) | 776 |
| BstBI | TTCGAA | 1 cut(s) | 1131 |
| BstC8I | GCNNGC | 2 cut(s) | 42, 77 |
| BstDEI | CTNAG | 5 cut(s) | 50, 225, 417, 738, 907 |
| BstEII | GGTNACC | 1 cut(s) | 615 |
| BstF5I | GGATG | 3 cut(s) | 262, 517, 1192 |
| BstHHI | GCGC | 1 cut(s) | 270 |
| BstKTI | GATC | 5 cut(s) | 131, 153, 442, 835, 1072 |
| BstMAI | GTCTC | 3 cut(s) | 77, 930, 967 |
| BstMBI | GATC | 5 cut(s) | 128, 150, 439, 832, 1069 |
| BstMCI | CGRYCG | 1 cut(s) | 76 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 22, 1031, 1040 |
| BstNSI | RCATGY | 1 cut(s) | 1121 |
| BstPI | GGTNACC | 1 cut(s) | 615 |
| BstSCI | CCNGG | 1 cut(s) | 493 |
| BstV1I | GCAGC | 2 cut(s) | 829, 835 |
| BstV2I | GAAGAC | 2 cut(s) | 327, 1097 |
| BstX2I | RGATCY | 1 cut(s) | 150 |
| BstYI | RGATCY | 1 cut(s) | 150 |
| BstZI | CGGCCG | 1 cut(s) | 73 |
| Bsu36I | CCTNAGG | 1 cut(s) | 417 |
| BsuRI | GGCC | 4 cut(s) | 75, 743, 759, 990 |
| BtsCI | GGATG | 3 cut(s) | 262, 517, 1192 |
| BtsIMutI | CAGTG | 1 cut(s) | 191 |
| Cac8I | GCNNGC | 2 cut(s) | 42, 77 |
| CciI | TCATGA | 1 cut(s) | 919 |
| CfoI | GCGC | 1 cut(s) | 270 |
| Cfr10I | RCCGGY | 2 cut(s) | 75, 404 |
| Cfr13I | GGNCC | 4 cut(s) | 29, 742, 758, 1145 |
| Csp6I | GTAC | 3 cut(s) | 161, 797, 953 |
| CspAI | ACCGGT | 1 cut(s) | 404 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 176, 211 |
| CviAII | CATG | 6 cut(s) | 265, 681, 920, 939, 992, 1118 |
| CviQI | GTAC | 3 cut(s) | 161, 797, 953 |
| DdeI | CTNAG | 5 cut(s) | 50, 225, 417, 738, 907 |
| DpnI | GATC | 5 cut(s) | 130, 152, 441, 834, 1071 |
| DpnII | GATC | 5 cut(s) | 128, 150, 439, 832, 1069 |
| EaeI | YGGCCR | 2 cut(s) | 73, 988 |
| EagI | CGGCCG | 1 cut(s) | 73 |
| Eam1104I | CTCTTC | 5 cut(s) | 99, 469, 988, 1080, 1155 |
| EarI | CTCTTC | 5 cut(s) | 99, 469, 988, 1080, 1155 |
| EciI | GGCGGA | 1 cut(s) | 567 |
| Ecl136II | GAGCTC | 1 cut(s) | 109 |
| EclXI | CGGCCG | 1 cut(s) | 73 |
| Eco130I | CCWWGG | 1 cut(s) | 547 |
| Eco24I | GRGCYC | 1 cut(s) | 111 |
| Eco47I | GGWCC | 2 cut(s) | 29, 1145 |
| Eco52I | CGGCCG | 1 cut(s) | 73 |
| Eco53kI | GAGCTC | 1 cut(s) | 109 |
| Eco57I | CTGAAG | 1 cut(s) | 1161 |
| Eco72I | CACGTG | 1 cut(s) | 776 |
| Eco81I | CCTNAGG | 1 cut(s) | 417 |
| Eco88I | CYCGRG | 1 cut(s) | 80 |
| Eco91I | GGTNACC | 1 cut(s) | 615 |
| EcoICRI | GAGCTC | 1 cut(s) | 109 |
| EcoO109I | RGGNCCY | 2 cut(s) | 758, 1145 |
| EcoO65I | GGTNACC | 1 cut(s) | 615 |
| EcoT14I | CCWWGG | 1 cut(s) | 547 |
| EcoT38I | GRGCYC | 1 cut(s) | 111 |
| ErhI | CCWWGG | 1 cut(s) | 547 |
| FaeI | CATG | 6 cut(s) | 268, 684, 923, 942, 995, 1121 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1037, 1069 |
| FaqI | GGGAC | 1 cut(s) | 698 |
| FatI | CATG | 6 cut(s) | 264, 680, 919, 938, 991, 1117 |
| FauI | CCCGC | 1 cut(s) | 33 |
| FauNDI | CATATG | 1 cut(s) | 352 |
| Fnu4HI | GCNGC | 2 cut(s) | 824, 843 |
| FokI | GGATG | 3 cut(s) | 269, 504, 1199 |
| FriOI | GRGCYC | 1 cut(s) | 111 |
| Fsp4HI | GCNGC | 2 cut(s) | 824, 843 |
| FspBI | CTAG | 8 cut(s) | 17, 132, 279, 564, 794, 804, 887, 1201 |
| GlaI | GCGC | 1 cut(s) | 269 |
| GluI | GCNGC | 2 cut(s) | 824, 843 |
| HaeIII | GGCC | 4 cut(s) | 75, 743, 759, 990 |
| HapII | CCGG | 4 cut(s) | 76, 405, 494, 643 |
| HhaI | GCGC | 1 cut(s) | 270 |
| Hin1II | CATG | 6 cut(s) | 268, 684, 923, 942, 995, 1121 |
| Hin6I | GCGC | 1 cut(s) | 268 |
| HinP1I | GCGC | 1 cut(s) | 268 |
| HincII | GTYRAC | 1 cut(s) | 997 |
| HindII | GTYRAC | 1 cut(s) | 997 |
| HinfI | GANTC | 5 cut(s) | 313, 593, 686, 911, 923 |
| HpaI | GTTAAC | 1 cut(s) | 997 |
| HpaII | CCGG | 4 cut(s) | 76, 405, 494, 643 |
| HphI | GGTGA | 1 cut(s) | 569 |
| Hpy166II | GTNNAC | 3 cut(s) | 161, 611, 997 |
| Hpy188I | TCNGA | 4 cut(s) | 113, 587, 675, 1180 |
| Hpy188III | TCNNGA | 8 cut(s) | 82, 91, 126, 132, 317, 483, 920, 1154 |
| Hpy8I | GTNNAC | 3 cut(s) | 161, 611, 997 |
| HpyAV | CCTTC | 3 cut(s) | 193, 1039, 1138 |
| HpyCH4III | ACNGT | 6 cut(s) | 195, 310, 615, 635, 670, 973 |
| HpyCH4IV | ACGT | 2 cut(s) | 576, 775 |
| HpyCH4V | TGCA | 5 cut(s) | 581, 652, 823, 1107, 1170 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 22, 1031, 1040 |
| HpyF3I | CTNAG | 5 cut(s) | 50, 225, 417, 738, 907 |
| HpySE526I | ACGT | 2 cut(s) | 576, 775 |
| Hsp92II | CATG | 6 cut(s) | 268, 684, 923, 942, 995, 1121 |
| HspAI | GCGC | 1 cut(s) | 268 |
| KroI | GCCGGC | 1 cut(s) | 75 |
| KroNI | GCCGGC | 1 cut(s) | 77 |
| KspAI | GTTAAC | 1 cut(s) | 997 |
| Kzo9I | GATC | 5 cut(s) | 128, 150, 439, 832, 1069 |
| LguI | GCTCTTC | 2 cut(s) | 99, 469 |
| Lsp1109I | GCAGC | 2 cut(s) | 829, 835 |
| LweI | GCATC | 3 cut(s) | 550, 810, 1147 |
| MaeI | CTAG | 8 cut(s) | 17, 132, 279, 564, 794, 804, 887, 1201 |
| MaeII | ACGT | 2 cut(s) | 576, 775 |
| MaeIII | GTNAC | 7 cut(s) | 310, 572, 615, 625, 635, 776, 870 |
| MalI | GATC | 5 cut(s) | 130, 152, 441, 834, 1071 |
| MboI | GATC | 5 cut(s) | 128, 150, 439, 832, 1069 |
| MfeI | CAATTG | 1 cut(s) | 957 |
| MflI | RGATCY | 1 cut(s) | 150 |
| MhlI | GDGCHC | 1 cut(s) | 111 |
| MlsI | TGGCCA | 1 cut(s) | 990 |
| MluNI | TGGCCA | 1 cut(s) | 990 |
| MlyI | GAGTC | 4 cut(s) | 307, 680, 905, 932 |
| Mox20I | TGGCCA | 1 cut(s) | 990 |
| MroNI | GCCGGC | 1 cut(s) | 75 |
| MroXI | GAANNNNTTC | 1 cut(s) | 209 |
| MscI | TGGCCA | 1 cut(s) | 990 |
| MseI | TTAA | 3 cut(s) | 173, 996, 1001 |
| Msp20I | TGGCCA | 1 cut(s) | 990 |
| MspA1I | CMGCKG | 1 cut(s) | 623 |
| MspI | CCGG | 4 cut(s) | 76, 405, 494, 643 |
| MspR9I | CCNGG | 1 cut(s) | 495 |
| MunI | CAATTG | 1 cut(s) | 957 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 22, 1031, 1040 |
| NaeI | GCCGGC | 1 cut(s) | 77 |
| NciI | CCSGG | 1 cut(s) | 495 |
| NdeI | CATATG | 1 cut(s) | 352 |
| NdeII | GATC | 5 cut(s) | 128, 150, 439, 832, 1069 |
| NgoMIV | GCCGGC | 1 cut(s) | 75 |
| NlaIII | CATG | 6 cut(s) | 268, 684, 923, 942, 995, 1121 |
| NmuCI | GTSAC | 4 cut(s) | 310, 572, 776, 870 |
| NspI | RCATGY | 1 cut(s) | 1121 |
| NspV | TTCGAA | 1 cut(s) | 1131 |
| PaeR7I | CTCGAG | 1 cut(s) | 80 |
| PagI | TCATGA | 1 cut(s) | 919 |
| PciSI | GCTCTTC | 2 cut(s) | 99, 469 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 78 |
| PdiI | GCCGGC | 1 cut(s) | 77 |
| PdmI | GAANNNNTTC | 1 cut(s) | 209 |
| PfeI | GAWTC | 1 cut(s) | 593 |
| PinAI | ACCGGT | 1 cut(s) | 404 |
| PkrI | GCNGC | 2 cut(s) | 825, 844 |
| PleI | GAGTC | 4 cut(s) | 307, 680, 905, 931 |
| PmaCI | CACGTG | 1 cut(s) | 776 |
| PmlI | CACGTG | 1 cut(s) | 776 |
| PpsI | GAGTC | 4 cut(s) | 307, 680, 905, 931 |
| Ppu21I | YACGTR | 1 cut(s) | 776 |
| PpuMI | RGGWCCY | 1 cut(s) | 1145 |
| Psp124BI | GAGCTC | 1 cut(s) | 111 |
| Psp5II | RGGWCCY | 1 cut(s) | 1145 |
| PspCI | CACGTG | 1 cut(s) | 776 |
| PspEI | GGTNACC | 1 cut(s) | 615 |
| PspPI | GGNCC | 4 cut(s) | 29, 742, 758, 1145 |
| PspPPI | RGGWCCY | 1 cut(s) | 1145 |
| PsuI | RGATCY | 1 cut(s) | 150 |
| RsaI | GTAC | 3 cut(s) | 162, 798, 954 |
| RsaNI | GTAC | 3 cut(s) | 161, 797, 953 |
| SacI | GAGCTC | 1 cut(s) | 111 |
| SapI | GCTCTTC | 2 cut(s) | 99, 469 |
| SaqAI | TTAA | 3 cut(s) | 173, 996, 1001 |
| SatI | GCNGC | 2 cut(s) | 824, 843 |
| Sau3AI | GATC | 5 cut(s) | 128, 150, 439, 832, 1069 |
| Sau96I | GGNCC | 4 cut(s) | 29, 742, 758, 1145 |
| SchI | GAGTC | 4 cut(s) | 307, 680, 905, 932 |
| ScrFI | CCNGG | 1 cut(s) | 495 |
| SduI | GDGCHC | 1 cut(s) | 111 |
| SfaNI | GCATC | 3 cut(s) | 550, 810, 1147 |
| Sfr274I | CTCGAG | 1 cut(s) | 80 |
| SfuI | TTCGAA | 1 cut(s) | 1131 |
| SinI | GGWCC | 2 cut(s) | 29, 1145 |
| SlaI | CTCGAG | 1 cut(s) | 80 |
| SmlI | CTYRAG | 2 cut(s) | 80, 315 |
| SmoI | CTYRAG | 2 cut(s) | 80, 315 |
| SpeI | ACTAGT | 2 cut(s) | 793, 886 |
| SsiI | CCGC | 4 cut(s) | 40, 539, 552, 623 |
| SspMI | CTAG | 8 cut(s) | 17, 132, 279, 564, 794, 804, 887, 1201 |
| SstI | GAGCTC | 1 cut(s) | 111 |
| StyD4I | CCNGG | 1 cut(s) | 493 |
| StyI | CCWWGG | 1 cut(s) | 547 |
| TaaI | ACNGT | 6 cut(s) | 195, 310, 615, 635, 670, 973 |
| TaiI | ACGT | 2 cut(s) | 579, 778 |
| TaqI | TCGA | 3 cut(s) | 81, 127, 1131 |
| TatI | WGTACW | 1 cut(s) | 796 |
| TfiI | GAWTC | 1 cut(s) | 593 |
| Tru1I | TTAA | 3 cut(s) | 173, 996, 1001 |
| Tru9I | TTAA | 3 cut(s) | 173, 996, 1001 |
| TscAI | CASTG | 1 cut(s) | 198 |
| TseFI | GTSAC | 4 cut(s) | 310, 572, 776, 870 |
| TseI | GCWGC | 2 cut(s) | 823, 842 |
| Tsp45I | GTSAC | 4 cut(s) | 310, 572, 776, 870 |
| TspDTI | ATGAA | 9 cut(s) | 253, 255, 339, 369, 386, 593, 669, 780, 927 |
| TspRI | CASTG | 1 cut(s) | 198 |
| VpaK11BI | GGWCC | 2 cut(s) | 29, 1145 |
| XapI | RAATTY | 5 cut(s) | 114, 209, 290, 356, 1134 |
| XbaI | TCTAGA | 1 cut(s) | 131 |
| XceI | RCATGY | 1 cut(s) | 1121 |
| XhoI | CTCGAG | 1 cut(s) | 80 |
| XmnI | GAANNNNTTC | 1 cut(s) | 209 |
| XspI | CTAG | 8 cut(s) | 17, 132, 279, 564, 794, 804, 887, 1201 |