ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 31 - 103 | 7e-08 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1219 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 903, 965, 1230, 1489 |
| AccII | CGCG | 1 cut(s) | 748 |
| AciI | CCGC | 5 cut(s) | 31, 268, 748, 879, 1314 |
| AcoI | YGGCCR | 2 cut(s) | 115, 1092 |
| AcsI | RAATTY | 2 cut(s) | 19, 556 |
| AcuI | CTGAAG | 5 cut(s) | 264, 670, 873, 1080, 1359 |
| AfaI | GTAC | 3 cut(s) | 401, 1027, 1609 |
| AfeI | AGCGCT | 1 cut(s) | 902 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 903, 965, 1230, 1379, 1489 |
| AflII | CTTAAG | 1 cut(s) | 497 |
| AgsI | TTSAA | 4 cut(s) | 742, 914, 1323, 1550 |
| AjnI | CCWGG | 4 cut(s) | 278, 785, 997, 1158 |
| AluBI | AGCT | 6 cut(s) | 925, 1343, 1385, 1448, 1543, 1569 |
| AluI | AGCT | 6 cut(s) | 925, 1343, 1385, 1448, 1543, 1569 |
| Alw21I | GWGCWC | 1 cut(s) | 1387 |
| Alw26I | GTCTC | 2 cut(s) | 794, 1121 |
| Aor51HI | AGCGCT | 1 cut(s) | 902 |
| AoxI | GGCC | 5 cut(s) | 115, 249, 1092, 1169, 1294 |
| ApeKI | GCWGC | 2 cut(s) | 273, 1566 |
| ApoI | RAATTY | 2 cut(s) | 19, 556 |
| AseI | ATTAAT | 1 cut(s) | 510 |
| AspLEI | GCGC | 3 cut(s) | 748, 903, 1244 |
| AspS9I | GGNCC | 5 cut(s) | 583, 735, 817, 1169, 1212 |
| AsuC2I | CCSGG | 1 cut(s) | 1096 |
| AsuHPI | GGTGA | 2 cut(s) | 975, 1151 |
| AvaII | GGWCC | 4 cut(s) | 583, 735, 817, 1212 |
| BaeGI | GKGCMC | 1 cut(s) | 1123 |
| BalI | TGGCCA | 1 cut(s) | 117 |
| BanII | GRGCYC | 4 cut(s) | 78, 349, 720, 1387 |
| BauI | CACGAG | 1 cut(s) | 828 |
| Bbv12I | GWGCWC | 1 cut(s) | 1387 |
| BbvI | GCAGC | 2 cut(s) | 260, 1578 |
| BccI | CCATC | 3 cut(s) | 209, 1081, 1160 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 749, 783 |
| BciT130I | CCWGG | 4 cut(s) | 280, 787, 999, 1160 |
| BcnI | CCSGG | 1 cut(s) | 1096 |
| BcoDI | GTCTC | 2 cut(s) | 794, 1121 |
| BfaI | CTAG | 1 cut(s) | 1245 |
| BfmI | CTRYAG | 2 cut(s) | 158, 973 |
| BfoI | RGCGCY | 1 cut(s) | 904 |
| BfrI | CTTAAG | 1 cut(s) | 497 |
| BglII | AGATCT | 1 cut(s) | 7 |
| BisI | GCNGC | 3 cut(s) | 274, 879, 1567 |
| BlsI | GCNGC | 3 cut(s) | 275, 880, 1568 |
| BmcAI | AGTACT | 1 cut(s) | 1609 |
| Bme1390I | CCNGG | 5 cut(s) | 280, 787, 999, 1096, 1160 |
| Bme18I | GGWCC | 4 cut(s) | 583, 735, 817, 1212 |
| BmgT120I | GGNCC | 5 cut(s) | 583, 735, 817, 1169, 1212 |
| BmiI | GGNNCC | 5 cut(s) | 346, 552, 895, 996, 1213 |
| BmrFI | CCNGG | 5 cut(s) | 280, 787, 999, 1096, 1160 |
| BmsI | GCATC | 4 cut(s) | 304, 483, 865, 978 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 224, 256 |
| BpmI | CTGGAG | 1 cut(s) | 925 |
| BpuEI | CTTGAG | 3 cut(s) | 469, 679, 1492 |
| BpuMI | CCSGG | 1 cut(s) | 1096 |
| Bsa29I | ATCGAT | 1 cut(s) | 759 |
| BsaJI | CCNNGG | 6 cut(s) | 278, 391, 786, 990, 1095, 1159 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 1594 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 903, 965, 1230, 1379, 1489 |
| Bse1I | ACTGG | 3 cut(s) | 643, 808, 970 |
| BseBI | CCWGG | 4 cut(s) | 280, 787, 999, 1160 |
| BseCI | ATCGAT | 1 cut(s) | 759 |
| BseDI | CCNNGG | 6 cut(s) | 278, 391, 786, 990, 1095, 1159 |
| BseGI | GGATG | 5 cut(s) | 220, 498, 880, 1171, 1330 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 903, 965, 1230, 1379, 1489 |
| BseMII | CTCAG | 1 cut(s) | 1400 |
| BseNI | ACTGG | 3 cut(s) | 643, 808, 970 |
| BseRI | GAGGAG | 1 cut(s) | 65 |
| BseSI | GKGCMC | 1 cut(s) | 1123 |
| BseXI | GCAGC | 2 cut(s) | 260, 1578 |
| BsgI | GTGCAG | 1 cut(s) | 391 |
| Bsh1236I | CGCG | 1 cut(s) | 748 |
| BshFI | GGCC | 5 cut(s) | 117, 251, 1094, 1171, 1296 |
| BshVI | ATCGAT | 1 cut(s) | 759 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1387 |
| BsiSI | CCGG | 1 cut(s) | 1095 |
| BslFI | GGGAC | 4 cut(s) | 764, 1114, 1225, 1412 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 903, 965, 1230, 1379, 1489 |
| BsmAI | GTCTC | 2 cut(s) | 794, 1121 |
| BsmFI | GGGAC | 4 cut(s) | 764, 1114, 1225, 1412 |
| BsnI | GGCC | 5 cut(s) | 117, 251, 1094, 1171, 1296 |
| Bsp1286I | GDGCHC | 5 cut(s) | 78, 349, 720, 1123, 1387 |
| Bsp143I | GATC | 4 cut(s) | 7, 1441, 1519, 1586 |
| BspACI | CCGC | 5 cut(s) | 31, 268, 748, 879, 1314 |
| BspANI | GGCC | 5 cut(s) | 117, 251, 1094, 1171, 1296 |
| BspCNI | CTCAG | 1 cut(s) | 1399 |
| BspDI | ATCGAT | 1 cut(s) | 759 |
| BspFNI | CGCG | 1 cut(s) | 748 |
| BspLI | GGNNCC | 5 cut(s) | 346, 552, 895, 996, 1213 |
| BspMAI | CTGCAG | 1 cut(s) | 162 |
| BspTI | CTTAAG | 1 cut(s) | 497 |
| BsrI | ACTGG | 3 cut(s) | 643, 808, 970 |
| BssECI | CCNNGG | 6 cut(s) | 278, 391, 786, 990, 1095, 1159 |
| BssMI | GATC | 4 cut(s) | 7, 1441, 1519, 1586 |
| BssSI | CACGAG | 1 cut(s) | 828 |
| BssT1I | CCWWGG | 2 cut(s) | 391, 990 |
| Bst2BI | CACGAG | 1 cut(s) | 828 |
| Bst2UI | CCWGG | 4 cut(s) | 280, 787, 999, 1160 |
| Bst4CI | ACNGT | 3 cut(s) | 766, 778, 1355 |
| Bst6I | CTCTTC | 2 cut(s) | 240, 358 |
| BstAFI | CTTAAG | 1 cut(s) | 497 |
| BstC8I | GCNNGC | 2 cut(s) | 1240, 1465 |
| BstDEI | CTNAG | 1 cut(s) | 1386 |
| BstF5I | GGATG | 5 cut(s) | 220, 498, 880, 1171, 1330 |
| BstFNI | CGCG | 1 cut(s) | 748 |
| BstH2I | RGCGCY | 1 cut(s) | 904 |
| BstHHI | GCGC | 3 cut(s) | 748, 903, 1244 |
| BstKTI | GATC | 4 cut(s) | 10, 1444, 1522, 1589 |
| BstMAI | GTCTC | 2 cut(s) | 794, 1121 |
| BstMBI | GATC | 4 cut(s) | 7, 1441, 1519, 1586 |
| BstNI | CCWGG | 4 cut(s) | 280, 787, 999, 1160 |
| BstNSI | RCATGY | 1 cut(s) | 1242 |
| BstSCI | CCNGG | 5 cut(s) | 278, 785, 997, 1094, 1158 |
| BstSFI | CTRYAG | 2 cut(s) | 158, 973 |
| BstSLI | GKGCMC | 1 cut(s) | 1123 |
| BstUI | CGCG | 1 cut(s) | 748 |
| BstV1I | GCAGC | 2 cut(s) | 260, 1578 |
| BstX2I | RGATCY | 1 cut(s) | 7 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1208 |
| BstYI | RGATCY | 1 cut(s) | 7 |
| Bsu15I | ATCGAT | 1 cut(s) | 759 |
| BsuRI | GGCC | 5 cut(s) | 117, 251, 1094, 1171, 1296 |
| BsuTUI | ATCGAT | 1 cut(s) | 759 |
| BtsCI | GGATG | 5 cut(s) | 220, 498, 880, 1171, 1330 |
| BtsIMutI | CAGTG | 1 cut(s) | 42 |
| Cac8I | GCNNGC | 2 cut(s) | 1240, 1465 |
| CfoI | GCGC | 3 cut(s) | 748, 903, 1244 |
| Cfr13I | GGNCC | 5 cut(s) | 583, 735, 817, 1169, 1212 |
| ClaI | ATCGAT | 1 cut(s) | 759 |
| Csp6I | GTAC | 3 cut(s) | 400, 1026, 1608 |
| CviAII | CATG | 8 cut(s) | 13, 587, 671, 721, 732, 1124, 1239, 1484 |
| CviQI | GTAC | 3 cut(s) | 400, 1026, 1608 |
| DdeI | CTNAG | 1 cut(s) | 1386 |
| DpnI | GATC | 4 cut(s) | 9, 1443, 1521, 1588 |
| DpnII | GATC | 4 cut(s) | 7, 1441, 1519, 1586 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1219 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1219 |
| EaeI | YGGCCR | 2 cut(s) | 115, 1092 |
| Eam1104I | CTCTTC | 2 cut(s) | 240, 358 |
| EarI | CTCTTC | 2 cut(s) | 240, 358 |
| Ecl136II | GAGCTC | 1 cut(s) | 1385 |
| Eco130I | CCWWGG | 2 cut(s) | 391, 990 |
| Eco24I | GRGCYC | 4 cut(s) | 78, 349, 720, 1387 |
| Eco32I | GATATC | 1 cut(s) | 1266 |
| Eco47I | GGWCC | 4 cut(s) | 583, 735, 817, 1212 |
| Eco47III | AGCGCT | 1 cut(s) | 902 |
| Eco53kI | GAGCTC | 1 cut(s) | 1385 |
| Eco57I | CTGAAG | 5 cut(s) | 264, 670, 873, 1080, 1359 |
| EcoICRI | GAGCTC | 1 cut(s) | 1385 |
| EcoRII | CCWGG | 4 cut(s) | 278, 785, 997, 1158 |
| EcoRV | GATATC | 1 cut(s) | 1266 |
| EcoT14I | CCWWGG | 2 cut(s) | 391, 990 |
| EcoT38I | GRGCYC | 4 cut(s) | 78, 349, 720, 1387 |
| ErhI | CCWWGG | 2 cut(s) | 391, 990 |
| FaeI | CATG | 8 cut(s) | 16, 590, 674, 724, 735, 1127, 1242, 1487 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 137, 169 |
| FaqI | GGGAC | 4 cut(s) | 764, 1114, 1225, 1412 |
| FatI | CATG | 8 cut(s) | 12, 586, 670, 720, 731, 1123, 1238, 1483 |
| FauI | CCCGC | 3 cut(s) | 261, 741, 1307 |
| FauNDI | CATATG | 1 cut(s) | 1591 |
| Fnu4HI | GCNGC | 3 cut(s) | 274, 879, 1567 |
| FokI | GGATG | 5 cut(s) | 227, 505, 887, 1178, 1317 |
| FriOI | GRGCYC | 4 cut(s) | 78, 349, 720, 1387 |
| Fsp4HI | GCNGC | 3 cut(s) | 274, 879, 1567 |
| FspBI | CTAG | 1 cut(s) | 1245 |
| GlaI | GCGC | 3 cut(s) | 747, 902, 1243 |
| GluI | GCNGC | 3 cut(s) | 274, 879, 1567 |
| GsuI | CTGGAG | 1 cut(s) | 925 |
| HaeII | RGCGCY | 1 cut(s) | 904 |
| HaeIII | GGCC | 5 cut(s) | 117, 251, 1094, 1171, 1296 |
| HapII | CCGG | 1 cut(s) | 1095 |
| HhaI | GCGC | 3 cut(s) | 748, 903, 1244 |
| Hin1II | CATG | 8 cut(s) | 16, 590, 674, 724, 735, 1127, 1242, 1487 |
| Hin6I | GCGC | 3 cut(s) | 746, 901, 1242 |
| HinP1I | GCGC | 3 cut(s) | 746, 901, 1242 |
| HincII | GTYRAC | 1 cut(s) | 1041 |
| HindII | GTYRAC | 1 cut(s) | 1041 |
| HindIII | AAGCTT | 1 cut(s) | 923 |
| HinfI | GANTC | 5 cut(s) | 262, 502, 628, 824, 1250 |
| HpaII | CCGG | 1 cut(s) | 1095 |
| HphI | GGTGA | 2 cut(s) | 975, 1151 |
| Hpy166II | GTNNAC | 2 cut(s) | 1041, 1392 |
| Hpy188III | TCNNGA | 3 cut(s) | 658, 891, 1509 |
| Hpy8I | GTNNAC | 2 cut(s) | 1041, 1392 |
| HpyAV | CCTTC | 7 cut(s) | 116, 668, 736, 932, 1182, 1187, 1540 |
| HpyCH4III | ACNGT | 3 cut(s) | 766, 778, 1355 |
| HpyCH4IV | ACGT | 2 cut(s) | 402, 1028 |
| HpyCH4V | TGCA | 8 cut(s) | 38, 160, 204, 317, 408, 606, 1033, 1429 |
| HpyF3I | CTNAG | 1 cut(s) | 1386 |
| HpySE526I | ACGT | 2 cut(s) | 402, 1028 |
| Hsp92II | CATG | 8 cut(s) | 16, 590, 674, 724, 735, 1127, 1242, 1487 |
| HspAI | GCGC | 3 cut(s) | 746, 901, 1242 |
| Kzo9I | GATC | 4 cut(s) | 7, 1441, 1519, 1586 |
| LmnI | GCTCC | 2 cut(s) | 344, 1382 |
| Lsp1109I | GCAGC | 2 cut(s) | 260, 1578 |
| LweI | GCATC | 4 cut(s) | 304, 483, 865, 978 |
| MaeI | CTAG | 1 cut(s) | 1245 |
| MaeII | ACGT | 2 cut(s) | 402, 1028 |
| MaeIII | GTNAC | 2 cut(s) | 383, 883 |
| MalI | GATC | 4 cut(s) | 9, 1443, 1521, 1588 |
| MboI | GATC | 4 cut(s) | 7, 1441, 1519, 1586 |
| MboII | GAAGA | 9 cut(s) | 17, 231, 257, 375, 562, 676, 803, 1195, 1202 |
| MflI | RGATCY | 1 cut(s) | 7 |
| MhlI | GDGCHC | 5 cut(s) | 78, 349, 720, 1123, 1387 |
| MlsI | TGGCCA | 1 cut(s) | 117 |
| MluCI | AATT | 8 cut(s) | 19, 292, 556, 1045, 1054, 1074, 1437, 1550 |
| MluNI | TGGCCA | 1 cut(s) | 117 |
| MlyI | GAGTC | 1 cut(s) | 1259 |
| MmeI | TCCRAC | 2 cut(s) | 447, 1225 |
| Mox20I | TGGCCA | 1 cut(s) | 117 |
| MscI | TGGCCA | 1 cut(s) | 117 |
| MseI | TTAA | 5 cut(s) | 66, 498, 510, 1470, 1479 |
| Msp20I | TGGCCA | 1 cut(s) | 117 |
| MspA1I | CMGCKG | 1 cut(s) | 881 |
| MspCI | CTTAAG | 1 cut(s) | 497 |
| MspI | CCGG | 1 cut(s) | 1095 |
| MspR9I | CCNGG | 5 cut(s) | 280, 787, 999, 1096, 1160 |
| MvaI | CCWGG | 4 cut(s) | 280, 787, 999, 1160 |
| MvnI | CGCG | 1 cut(s) | 748 |
| NciI | CCSGG | 1 cut(s) | 1096 |
| NdeI | CATATG | 1 cut(s) | 1591 |
| NdeII | GATC | 4 cut(s) | 7, 1441, 1519, 1586 |
| NlaIII | CATG | 8 cut(s) | 16, 590, 674, 724, 735, 1127, 1242, 1487 |
| NlaIV | GGNNCC | 5 cut(s) | 346, 552, 895, 996, 1213 |
| NmuCI | GTSAC | 1 cut(s) | 883 |
| NspI | RCATGY | 1 cut(s) | 1242 |
| PaeI | GCATGC | 1 cut(s) | 1242 |
| PfeI | GAWTC | 4 cut(s) | 262, 502, 628, 824 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 903, 965, 1230, 1489 |
| PkrI | GCNGC | 3 cut(s) | 275, 880, 1568 |
| PleI | GAGTC | 1 cut(s) | 1258 |
| PpsI | GAGTC | 1 cut(s) | 1258 |
| PshBI | ATTAAT | 1 cut(s) | 510 |
| Psp124BI | GAGCTC | 1 cut(s) | 1387 |
| Psp6I | CCWGG | 4 cut(s) | 278, 785, 997, 1158 |
| PspGI | CCWGG | 4 cut(s) | 278, 785, 997, 1158 |
| PspN4I | GGNNCC | 5 cut(s) | 346, 552, 895, 996, 1213 |
| PspPI | GGNCC | 5 cut(s) | 583, 735, 817, 1169, 1212 |
| PstI | CTGCAG | 1 cut(s) | 162 |
| PsuI | RGATCY | 1 cut(s) | 7 |
| RsaI | GTAC | 3 cut(s) | 401, 1027, 1609 |
| RsaNI | GTAC | 3 cut(s) | 400, 1026, 1608 |
| SacI | GAGCTC | 1 cut(s) | 1387 |
| SaqAI | TTAA | 5 cut(s) | 66, 498, 510, 1470, 1479 |
| SatI | GCNGC | 3 cut(s) | 274, 879, 1567 |
| Sau3AI | GATC | 4 cut(s) | 7, 1441, 1519, 1586 |
| Sau96I | GGNCC | 5 cut(s) | 583, 735, 817, 1169, 1212 |
| ScaI | AGTACT | 1 cut(s) | 1609 |
| SchI | GAGTC | 1 cut(s) | 1259 |
| ScrFI | CCNGG | 5 cut(s) | 280, 787, 999, 1096, 1160 |
| SduI | GDGCHC | 5 cut(s) | 78, 349, 720, 1123, 1387 |
| SfaNI | GCATC | 4 cut(s) | 304, 483, 865, 978 |
| SfcI | CTRYAG | 2 cut(s) | 158, 973 |
| SinI | GGWCC | 4 cut(s) | 583, 735, 817, 1212 |
| SmlI | CTYRAG | 4 cut(s) | 448, 497, 658, 1507 |
| SmoI | CTYRAG | 4 cut(s) | 448, 497, 658, 1507 |
| SphI | GCATGC | 1 cut(s) | 1242 |
| Sse9I | AATT | 8 cut(s) | 19, 292, 556, 1045, 1054, 1074, 1437, 1550 |
| SsiI | CCGC | 5 cut(s) | 31, 268, 748, 879, 1314 |
| SspMI | CTAG | 1 cut(s) | 1245 |
| SstI | GAGCTC | 1 cut(s) | 1387 |
| StyD4I | CCNGG | 5 cut(s) | 278, 785, 997, 1094, 1158 |
| StyI | CCWWGG | 2 cut(s) | 391, 990 |
| TaaI | ACNGT | 3 cut(s) | 766, 778, 1355 |
| TaiI | ACGT | 2 cut(s) | 405, 1031 |
| TaqI | TCGA | 4 cut(s) | 231, 288, 759, 1444 |
| TaqII | GACCGA | 1 cut(s) | 563 |
| TasI | AATT | 8 cut(s) | 19, 292, 556, 1045, 1054, 1074, 1437, 1550 |
| TatI | WGTACW | 1 cut(s) | 1607 |
| TauI | GCSGC | 1 cut(s) | 881 |
| TfiI | GAWTC | 4 cut(s) | 262, 502, 628, 824 |
| Tru1I | TTAA | 5 cut(s) | 66, 498, 510, 1470, 1479 |
| Tru9I | TTAA | 5 cut(s) | 66, 498, 510, 1470, 1479 |
| TscAI | CASTG | 1 cut(s) | 49 |
| TseFI | GTSAC | 1 cut(s) | 883 |
| TseI | GCWGC | 2 cut(s) | 273, 1566 |
| Tsp45I | GTSAC | 1 cut(s) | 883 |
| TspDTI | ATGAA | 5 cut(s) | 384, 687, 737, 1469, 1522 |
| TspGWI | ACGGA | 3 cut(s) | 375, 441, 1362 |
| TspRI | CASTG | 1 cut(s) | 49 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 903, 965, 1230, 1489 |
| Vha464I | CTTAAG | 1 cut(s) | 497 |
| VpaK11BI | GGWCC | 4 cut(s) | 583, 735, 817, 1212 |
| VspI | ATTAAT | 1 cut(s) | 510 |
| XapI | RAATTY | 2 cut(s) | 19, 556 |
| XceI | RCATGY | 1 cut(s) | 1242 |
| XspI | CTAG | 1 cut(s) | 1245 |
| ZrmI | AGTACT | 1 cut(s) | 1609 |