Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 346, 392, 422, 971 |
| AclWI | GGATC | 4 cut(s) | 238, 251, 273, 413 |
| AcoI | YGGCCR | 1 cut(s) | 526 |
| AcsI | RAATTY | 1 cut(s) | 587 |
| AcuI | CTGAAG | 1 cut(s) | 362 |
| AcyI | GRCGYC | 2 cut(s) | 554, 981 |
| AfaI | GTAC | 1 cut(s) | 964 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 296 |
| AgsI | TTSAA | 3 cut(s) | 63, 595, 689 |
| AjiI | CACGTC | 1 cut(s) | 761 |
| AjnI | CCWGG | 1 cut(s) | 171 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 86, 118 |
| AleI | CACNNNNGTG | 1 cut(s) | 163 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 43, 75 |
| AluBI | AGCT | 4 cut(s) | 84, 97, 237, 841 |
| AluI | AGCT | 4 cut(s) | 84, 97, 237, 841 |
| Alw26I | GTCTC | 3 cut(s) | 51, 436, 972 |
| AlwI | GGATC | 4 cut(s) | 238, 251, 273, 413 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 950 |
| AoxI | GGCC | 3 cut(s) | 526, 786, 899 |
| ApoI | RAATTY | 1 cut(s) | 587 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 840 |
| AspLEI | GCGC | 1 cut(s) | 934 |
| AspS9I | GGNCC | 1 cut(s) | 369 |
| AsuHPI | GGTGA | 2 cut(s) | 136, 652 |
| AvaII | GGWCC | 1 cut(s) | 369 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 467, 500 |
| BalI | TGGCCA | 1 cut(s) | 528 |
| BamHI | GGATCC | 1 cut(s) | 243 |
| BccI | CCATC | 4 cut(s) | 142, 401, 496, 912 |
| BciT130I | CCWGG | 1 cut(s) | 173 |
| BcoDI | GTCTC | 3 cut(s) | 51, 436, 972 |
| BfaI | CTAG | 6 cut(s) | 293, 389, 488, 581, 756, 966 |
| BglII | AGATCT | 1 cut(s) | 337 |
| Bme1390I | CCNGG | 1 cut(s) | 173 |
| Bme18I | GGWCC | 1 cut(s) | 369 |
| BmgBI | CACGTC | 1 cut(s) | 761 |
| BmgT120I | GGNCC | 1 cut(s) | 369 |
| BmiI | GGNNCC | 2 cut(s) | 170, 245 |
| BmrFI | CCNGG | 1 cut(s) | 173 |
| BpmI | CTGGAG | 1 cut(s) | 762 |
| BsaHI | GRCGYC | 2 cut(s) | 554, 981 |
| BsaJI | CCNNGG | 2 cut(s) | 365, 479 |
| BsaWI | WCCGGW | 1 cut(s) | 262 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 43, 73, 812, 842 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 296 |
| Bse118I | RCCGGY | 1 cut(s) | 983 |
| Bse1I | ACTGG | 3 cut(s) | 745, 837, 919 |
| BseBI | CCWGG | 1 cut(s) | 173 |
| BseDI | CCNNGG | 2 cut(s) | 365, 479 |
| BseGI | GGATG | 3 cut(s) | 504, 569, 923 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 296 |
| BseMII | CTCAG | 2 cut(s) | 869, 917 |
| BseNI | ACTGG | 3 cut(s) | 745, 837, 919 |
| BseRI | GAGGAG | 4 cut(s) | 312, 506, 791, 836 |
| BseYI | CCCAGC | 1 cut(s) | 767 |
| BshFI | GGCC | 3 cut(s) | 528, 788, 901 |
| BsiSI | CCGG | 3 cut(s) | 263, 935, 984 |
| BslFI | GGGAC | 1 cut(s) | 199 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 296 |
| BsmAI | GTCTC | 3 cut(s) | 51, 436, 972 |
| BsmBI | CGTCTC | 1 cut(s) | 972 |
| BsmFI | GGGAC | 1 cut(s) | 199 |
| BsmI | GAATGC | 1 cut(s) | 676 |
| BsnI | GGCC | 3 cut(s) | 528, 788, 901 |
| Bsp143I | GATC | 7 cut(s) | 126, 243, 265, 337, 418, 642, 682 |
| BspACI | CCGC | 4 cut(s) | 346, 392, 422, 971 |
| BspANI | GGCC | 3 cut(s) | 528, 788, 901 |
| BspCNI | CTCAG | 2 cut(s) | 868, 916 |
| BspLI | GGNNCC | 2 cut(s) | 170, 245 |
| BspPI | GGATC | 4 cut(s) | 238, 251, 273, 413 |
| BspQI | GCTCTTC | 1 cut(s) | 147 |
| BsrFI | RCCGGY | 1 cut(s) | 983 |
| BsrI | ACTGG | 3 cut(s) | 745, 837, 919 |
| BssAI | RCCGGY | 1 cut(s) | 983 |
| BssECI | CCNNGG | 2 cut(s) | 365, 479 |
| BssMI | GATC | 7 cut(s) | 126, 243, 265, 337, 418, 642, 682 |
| BssNI | GRCGYC | 2 cut(s) | 554, 981 |
| Bst2UI | CCWGG | 1 cut(s) | 173 |
| Bst4CI | ACNGT | 1 cut(s) | 165 |
| Bst6I | CTCTTC | 1 cut(s) | 147 |
| BstACI | GRCGYC | 2 cut(s) | 554, 981 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 671 |
| BstC8I | GCNNGC | 6 cut(s) | 99, 286, 348, 508, 786, 985 |
| BstDEI | CTNAG | 4 cut(s) | 90, 558, 855, 903 |
| BstDSI | CCRYGG | 1 cut(s) | 365 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 294 |
| BstF5I | GGATG | 3 cut(s) | 504, 569, 923 |
| BstHHI | GCGC | 1 cut(s) | 934 |
| BstKTI | GATC | 7 cut(s) | 129, 246, 268, 340, 421, 645, 685 |
| BstMAI | GTCTC | 3 cut(s) | 51, 436, 972 |
| BstMBI | GATC | 7 cut(s) | 126, 243, 265, 337, 418, 642, 682 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 671, 847 |
| BstNI | CCWGG | 1 cut(s) | 173 |
| BstSCI | CCNGG | 1 cut(s) | 171 |
| BstX2I | RGATCY | 3 cut(s) | 243, 337, 418 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 165, 536 |
| BstYI | RGATCY | 3 cut(s) | 243, 337, 418 |
| BsuRI | GGCC | 3 cut(s) | 528, 788, 901 |
| BtgI | CCRYGG | 1 cut(s) | 365 |
| BtrI | CACGTC | 1 cut(s) | 761 |
| BtsCI | GGATG | 3 cut(s) | 504, 569, 923 |
| Cac8I | GCNNGC | 6 cut(s) | 99, 286, 348, 508, 786, 985 |
| CaiI | CAGNNNCTG | 1 cut(s) | 950 |
| CfoI | GCGC | 1 cut(s) | 934 |
| Cfr10I | RCCGGY | 1 cut(s) | 983 |
| Cfr13I | GGNCC | 1 cut(s) | 369 |
| CseI | GACGC | 1 cut(s) | 543 |
| Csp6I | GTAC | 1 cut(s) | 963 |
| CviAII | CATG | 1 cut(s) | 442 |
| CviQI | GTAC | 1 cut(s) | 963 |
| DdeI | CTNAG | 4 cut(s) | 90, 558, 855, 903 |
| DpnI | GATC | 7 cut(s) | 128, 245, 267, 339, 420, 644, 684 |
| DpnII | GATC | 7 cut(s) | 126, 243, 265, 337, 418, 642, 682 |
| DraI | TTTAAA | 2 cut(s) | 325, 649 |
| EaeI | YGGCCR | 1 cut(s) | 526 |
| Eam1104I | CTCTTC | 1 cut(s) | 147 |
| EarI | CTCTTC | 1 cut(s) | 147 |
| EciI | GGCGGA | 1 cut(s) | 986 |
| Eco147I | AGGCCT | 2 cut(s) | 788, 901 |
| Eco47I | GGWCC | 1 cut(s) | 369 |
| Eco57I | CTGAAG | 1 cut(s) | 362 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 294 |
| EcoRI | GAATTC | 1 cut(s) | 587 |
| EcoRII | CCWGG | 1 cut(s) | 171 |
| Esp3I | CGTCTC | 1 cut(s) | 972 |
| FaeI | CATG | 1 cut(s) | 445 |
| FaiI | YATR | 6 cut(s) | 204, 330, 443, 693, 738, 926 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 21, 53 |
| FaqI | GGGAC | 1 cut(s) | 199 |
| FatI | CATG | 1 cut(s) | 441 |
| FauI | CCCGC | 1 cut(s) | 339 |
| FokI | GGATG | 3 cut(s) | 511, 576, 930 |
| FspBI | CTAG | 6 cut(s) | 293, 389, 488, 581, 756, 966 |
| GlaI | GCGC | 1 cut(s) | 933 |
| GsaI | CCCAGC | 1 cut(s) | 771 |
| GsuI | CTGGAG | 1 cut(s) | 762 |
| HaeIII | GGCC | 3 cut(s) | 528, 788, 901 |
| HapII | CCGG | 3 cut(s) | 263, 935, 984 |
| HgaI | GACGC | 1 cut(s) | 543 |
| HhaI | GCGC | 1 cut(s) | 934 |
| Hin1I | GRCGYC | 2 cut(s) | 554, 981 |
| Hin1II | CATG | 1 cut(s) | 445 |
| Hin6I | GCGC | 1 cut(s) | 932 |
| HinP1I | GCGC | 1 cut(s) | 932 |
| HincII | GTYRAC | 1 cut(s) | 777 |
| HindII | GTYRAC | 1 cut(s) | 777 |
| HindIII | AAGCTT | 3 cut(s) | 82, 95, 235 |
| HinfI | GANTC | 4 cut(s) | 52, 212, 457, 794 |
| HpaI | GTTAAC | 1 cut(s) | 777 |
| HpaII | CCGG | 3 cut(s) | 263, 935, 984 |
| HphI | GGTGA | 2 cut(s) | 136, 652 |
| Hpy166II | GTNNAC | 1 cut(s) | 777 |
| Hpy188I | TCNGA | 8 cut(s) | 51, 80, 139, 256, 270, 342, 462, 906 |
| Hpy188III | TCNNGA | 6 cut(s) | 192, 454, 488, 592, 686, 857 |
| Hpy8I | GTNNAC | 1 cut(s) | 777 |
| Hpy99I | CGWCG | 1 cut(s) | 165 |
| HpyAV | CCTTC | 1 cut(s) | 811 |
| HpyCH4III | ACNGT | 1 cut(s) | 165 |
| HpyCH4IV | ACGT | 1 cut(s) | 760 |
| HpyCH4V | TGCA | 2 cut(s) | 445, 522 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 671, 847 |
| HpyF3I | CTNAG | 4 cut(s) | 90, 558, 855, 903 |
| HpySE526I | ACGT | 1 cut(s) | 760 |
| Hsp92I | GRCGYC | 2 cut(s) | 554, 981 |
| Hsp92II | CATG | 1 cut(s) | 445 |
| HspAI | GCGC | 1 cut(s) | 932 |
| KroI | GCCGGC | 1 cut(s) | 983 |
| KroNI | GCCGGC | 1 cut(s) | 985 |
| KspAI | GTTAAC | 1 cut(s) | 777 |
| Kzo9I | GATC | 7 cut(s) | 126, 243, 265, 337, 418, 642, 682 |
| LguI | GCTCTTC | 1 cut(s) | 147 |
| LmnI | GCTCC | 2 cut(s) | 781, 859 |
| MaeI | CTAG | 6 cut(s) | 293, 389, 488, 581, 756, 966 |
| MaeII | ACGT | 1 cut(s) | 760 |
| MaeIII | GTNAC | 2 cut(s) | 400, 828 |
| MalI | GATC | 7 cut(s) | 128, 245, 267, 339, 420, 644, 684 |
| MboI | GATC | 7 cut(s) | 126, 243, 265, 337, 418, 642, 682 |
| MboII | GAAGA | 5 cut(s) | 164, 428, 709, 826, 919 |
| MflI | RGATCY | 3 cut(s) | 243, 337, 418 |
| MlsI | TGGCCA | 1 cut(s) | 528 |
| MluCI | AATT | 5 cut(s) | 182, 276, 587, 597, 938 |
| MluNI | TGGCCA | 1 cut(s) | 528 |
| MlyI | GAGTC | 2 cut(s) | 61, 221 |
| MmeI | TCCRAC | 1 cut(s) | 58 |
| Mox20I | TGGCCA | 1 cut(s) | 528 |
| MreI | CGCCGGCG | 1 cut(s) | 983 |
| MroNI | GCCGGC | 1 cut(s) | 983 |
| MroXI | GAANNNNTTC | 1 cut(s) | 840 |
| MscI | TGGCCA | 1 cut(s) | 528 |
| MseI | TTAA | 3 cut(s) | 324, 648, 776 |
| MslI | CAYNNNNRTG | 1 cut(s) | 163 |
| Msp20I | TGGCCA | 1 cut(s) | 528 |
| MspA1I | CMGCKG | 1 cut(s) | 424 |
| MspI | CCGG | 3 cut(s) | 263, 935, 984 |
| MspR9I | CCNGG | 1 cut(s) | 173 |
| Mva1269I | GAATGC | 1 cut(s) | 676 |
| MvaI | CCWGG | 1 cut(s) | 173 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 671, 847 |
| NaeI | GCCGGC | 1 cut(s) | 985 |
| NdeII | GATC | 7 cut(s) | 126, 243, 265, 337, 418, 642, 682 |
| NgoMIV | GCCGGC | 1 cut(s) | 983 |
| NlaIII | CATG | 1 cut(s) | 445 |
| NlaIV | GGNNCC | 2 cut(s) | 170, 245 |
| NmeAIII | GCCGAG | 1 cut(s) | 835 |
| OliI | CACNNNNGTG | 1 cut(s) | 163 |
| PceI | AGGCCT | 2 cut(s) | 788, 901 |
| PciSI | GCTCTTC | 1 cut(s) | 147 |
| PctI | GAATGC | 1 cut(s) | 676 |
| PdiI | GCCGGC | 1 cut(s) | 985 |
| PdmI | GAANNNNTTC | 1 cut(s) | 840 |
| PfeI | GAWTC | 2 cut(s) | 457, 794 |
| PleI | GAGTC | 2 cut(s) | 60, 220 |
| PpsI | GAGTC | 2 cut(s) | 60, 220 |
| Psp6I | CCWGG | 1 cut(s) | 171 |
| PspFI | CCCAGC | 1 cut(s) | 767 |
| PspGI | CCWGG | 1 cut(s) | 171 |
| PspN4I | GGNNCC | 2 cut(s) | 170, 245 |
| PspPI | GGNCC | 1 cut(s) | 369 |
| PstNI | CAGNNNCTG | 1 cut(s) | 950 |
| PsuI | RGATCY | 3 cut(s) | 243, 337, 418 |
| RsaI | GTAC | 1 cut(s) | 964 |
| RsaNI | GTAC | 1 cut(s) | 963 |
| RseI | CAYNNNNRTG | 1 cut(s) | 163 |
| SapI | GCTCTTC | 1 cut(s) | 147 |
| SaqAI | TTAA | 3 cut(s) | 324, 648, 776 |
| Sau3AI | GATC | 7 cut(s) | 126, 243, 265, 337, 418, 642, 682 |
| Sau96I | GGNCC | 1 cut(s) | 369 |
| SchI | GAGTC | 2 cut(s) | 61, 221 |
| ScrFI | CCNGG | 1 cut(s) | 173 |
| SgrAI | CRCCGGYG | 1 cut(s) | 983 |
| SinI | GGWCC | 1 cut(s) | 369 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 163 |
| Sse9I | AATT | 5 cut(s) | 182, 276, 587, 597, 938 |
| SseBI | AGGCCT | 2 cut(s) | 788, 901 |
| SsiI | CCGC | 4 cut(s) | 346, 392, 422, 971 |
| SspMI | CTAG | 6 cut(s) | 293, 389, 488, 581, 756, 966 |
| StuI | AGGCCT | 2 cut(s) | 788, 901 |
| StyD4I | CCNGG | 1 cut(s) | 171 |
| TaaI | ACNGT | 1 cut(s) | 165 |
| TaiI | ACGT | 1 cut(s) | 763 |
| TaqI | TCGA | 2 cut(s) | 618, 844 |
| TasI | AATT | 5 cut(s) | 182, 276, 587, 597, 938 |
| TfiI | GAWTC | 2 cut(s) | 457, 794 |
| Tru1I | TTAA | 3 cut(s) | 324, 648, 776 |
| Tru9I | TTAA | 3 cut(s) | 324, 648, 776 |
| TspDTI | ATGAA | 2 cut(s) | 245, 345 |
| TspGWI | ACGGA | 1 cut(s) | 794 |
| VpaK11BI | GGWCC | 1 cut(s) | 369 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 294 |
| XapI | RAATTY | 1 cut(s) | 587 |
| XbaI | TCTAGA | 1 cut(s) | 487 |
| XmnI | GAANNNNTTC | 1 cut(s) | 840 |
| XspI | CTAG | 6 cut(s) | 293, 389, 488, 581, 756, 966 |