Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 316 |
| AccB1I | GGYRCC | 1 cut(s) | 817 |
| AccI | GTMKAC | 1 cut(s) | 1346 |
| AccII | CGCG | 3 cut(s) | 27, 1149, 1261 |
| AciI | CCGC | 7 cut(s) | 25, 152, 863, 913, 926, 992, 1149 |
| AclWI | GGATC | 8 cut(s) | 288, 562, 620, 903, 1112, 1122, 1135, 1197 |
| AcsI | RAATTY | 1 cut(s) | 874 |
| AfaI | GTAC | 1 cut(s) | 917 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 196, 197, 772, 941, 1217, 1358, 1359 |
| AflIII | ACRYGT | 2 cut(s) | 559, 809 |
| AgsI | TTSAA | 7 cut(s) | 35, 50, 182, 277, 352, 831, 1168 |
| AjiI | CACGTC | 2 cut(s) | 75, 137 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1014, 1046, 1166, 1198 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1224, 1256 |
| AluBI | AGCT | 2 cut(s) | 762, 1311 |
| AluI | AGCT | 2 cut(s) | 762, 1311 |
| Alw21I | GWGCWC | 2 cut(s) | 142, 234 |
| Alw26I | GTCTC | 3 cut(s) | 127, 616, 1161 |
| AlwI | GGATC | 8 cut(s) | 288, 562, 620, 903, 1112, 1122, 1135, 1197 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 431 |
| AoxI | GGCC | 3 cut(s) | 43, 121, 927 |
| ApeKI | GCWGC | 2 cut(s) | 149, 762 |
| ApoI | RAATTY | 1 cut(s) | 874 |
| AspLEI | GCGC | 2 cut(s) | 317, 1263 |
| AspS9I | GGNCC | 1 cut(s) | 1336 |
| AsuC2I | CCSGG | 3 cut(s) | 767, 977, 1122 |
| AsuHPI | GGTGA | 5 cut(s) | 388, 630, 631, 673, 924 |
| AsuII | TTCGAA | 1 cut(s) | 1476 |
| AsuNHI | GCTAGC | 1 cut(s) | 988 |
| AvaII | GGWCC | 1 cut(s) | 1336 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1281, 1314 |
| BamHI | GGATCC | 1 cut(s) | 1127 |
| BanI | GGYRCC | 1 cut(s) | 817 |
| BanII | GRGCYC | 1 cut(s) | 501 |
| BbsI | GAAGAC | 2 cut(s) | 1432, 1436 |
| Bbv12I | GWGCWC | 2 cut(s) | 142, 234 |
| BbvI | GCAGC | 2 cut(s) | 161, 749 |
| BccI | CCATC | 9 cut(s) | 317, 428, 668, 880, 940, 950, 1019, 1106, 1271 |
| BceAI | ACGGC | 1 cut(s) | 252 |
| BciVI | GTATCC | 1 cut(s) | 1282 |
| BcnI | CCSGG | 3 cut(s) | 767, 977, 1122 |
| BcoDI | GTCTC | 3 cut(s) | 127, 616, 1161 |
| BfaI | CTAG | 2 cut(s) | 759, 989 |
| BfmI | CTRYAG | 2 cut(s) | 147, 1267 |
| BfuI | GTATCC | 1 cut(s) | 1282 |
| BisI | GCNGC | 4 cut(s) | 150, 153, 763, 927 |
| BlpI | GCTNAGC | 1 cut(s) | 679 |
| BlsI | GCNGC | 4 cut(s) | 151, 154, 764, 928 |
| Bme1390I | CCNGG | 3 cut(s) | 767, 977, 1122 |
| Bme18I | GGWCC | 1 cut(s) | 1336 |
| BmgBI | CACGTC | 2 cut(s) | 75, 137 |
| BmgT120I | GGNCC | 1 cut(s) | 1336 |
| BmiI | GGNNCC | 4 cut(s) | 500, 819, 1129, 1337 |
| BmrFI | CCNGG | 3 cut(s) | 767, 977, 1122 |
| BmsI | GCATC | 4 cut(s) | 217, 369, 955, 1195 |
| BmtI | GCTAGC | 1 cut(s) | 992 |
| BpiI | GAAGAC | 2 cut(s) | 1432, 1436 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 124, 156 |
| BpmI | CTGGAG | 1 cut(s) | 890 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 679 |
| Bpu14I | TTCGAA | 1 cut(s) | 1476 |
| BpuEI | CTTGAG | 1 cut(s) | 469 |
| BpuMI | CCSGG | 3 cut(s) | 767, 977, 1122 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1116 |
| BsaJI | CCNNGG | 2 cut(s) | 392, 647 |
| BsaWI | WCCGGW | 1 cut(s) | 934 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 196, 197, 772, 941, 1217, 1358, 1359 |
| Bse1I | ACTGG | 3 cut(s) | 873, 1014, 1339 |
| Bse3DI | GCAATG | 1 cut(s) | 531 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1116 |
| BseDI | CCNNGG | 2 cut(s) | 392, 647 |
| BseGI | GGATG | 5 cut(s) | 328, 392, 577, 951, 970 |
| BseJI | GATNNNNATC | 1 cut(s) | 1116 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 196, 197, 772, 941, 1217, 1358, 1359 |
| BseMI | GCAATG | 1 cut(s) | 531 |
| BseMII | CTCAG | 4 cut(s) | 107, 813, 873, 1151 |
| BseNI | ACTGG | 3 cut(s) | 873, 1014, 1339 |
| BseRI | GAGGAG | 2 cut(s) | 495, 1097 |
| BseXI | GCAGC | 2 cut(s) | 161, 749 |
| Bsh1236I | CGCG | 3 cut(s) | 27, 1149, 1261 |
| BshFI | GGCC | 3 cut(s) | 45, 123, 929 |
| BshNI | GGYRCC | 1 cut(s) | 817 |
| BsiHKAI | GWGCWC | 2 cut(s) | 142, 234 |
| BsiSI | CCGG | 5 cut(s) | 58, 767, 935, 977, 1121 |
| BslFI | GGGAC | 2 cut(s) | 853, 879 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 196, 197, 772, 941, 1217, 1358, 1359 |
| BsmAI | GTCTC | 3 cut(s) | 127, 616, 1161 |
| BsmBI | CGTCTC | 1 cut(s) | 127 |
| BsmFI | GGGAC | 2 cut(s) | 853, 879 |
| BsnI | GGCC | 3 cut(s) | 45, 123, 929 |
| Bsp119I | TTCGAA | 1 cut(s) | 1476 |
| Bsp1286I | GDGCHC | 3 cut(s) | 142, 234, 501 |
| Bsp143I | GATC | 8 cut(s) | 125, 280, 554, 612, 895, 1117, 1127, 1189 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 679 |
| BspACI | CCGC | 7 cut(s) | 25, 152, 863, 913, 926, 992, 1149 |
| BspANI | GGCC | 3 cut(s) | 45, 123, 929 |
| BspCNI | CTCAG | 4 cut(s) | 106, 814, 874, 1152 |
| BspFNI | CGCG | 3 cut(s) | 27, 1149, 1261 |
| BspHI | TCATGA | 1 cut(s) | 1243 |
| BspLI | GGNNCC | 4 cut(s) | 500, 819, 1129, 1337 |
| BspMAI | CTGCAG | 1 cut(s) | 151 |
| BspOI | GCTAGC | 1 cut(s) | 992 |
| BspPI | GGATC | 8 cut(s) | 288, 562, 620, 903, 1112, 1122, 1135, 1197 |
| BspT104I | TTCGAA | 1 cut(s) | 1476 |
| BspT107I | GGYRCC | 1 cut(s) | 817 |
| BsrDI | GCAATG | 1 cut(s) | 531 |
| BsrI | ACTGG | 3 cut(s) | 873, 1014, 1339 |
| BssECI | CCNNGG | 2 cut(s) | 392, 647 |
| BssMI | GATC | 8 cut(s) | 125, 280, 554, 612, 895, 1117, 1127, 1189 |
| BssT1I | CCWWGG | 1 cut(s) | 647 |
| Bst4CI | ACNGT | 4 cut(s) | 548, 836, 844, 1096 |
| BstBI | TTCGAA | 1 cut(s) | 1476 |
| BstC8I | GCNNGC | 2 cut(s) | 121, 990 |
| BstDEI | CTNAG | 5 cut(s) | 93, 679, 822, 882, 1160 |
| BstDSI | CCRYGG | 1 cut(s) | 392 |
| BstF5I | GGATG | 5 cut(s) | 328, 392, 577, 951, 970 |
| BstFNI | CGCG | 3 cut(s) | 27, 1149, 1261 |
| BstHHI | GCGC | 2 cut(s) | 317, 1263 |
| BstKTI | GATC | 8 cut(s) | 128, 283, 557, 615, 898, 1120, 1130, 1192 |
| BstMAI | GTCTC | 3 cut(s) | 127, 616, 1161 |
| BstMBI | GATC | 8 cut(s) | 125, 280, 554, 612, 895, 1117, 1127, 1189 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 146 |
| BstNSI | RCATGY | 3 cut(s) | 563, 813, 1487 |
| BstSCI | CCNGG | 3 cut(s) | 765, 975, 1120 |
| BstSFI | CTRYAG | 2 cut(s) | 147, 1267 |
| BstUI | CGCG | 3 cut(s) | 27, 1149, 1261 |
| BstV1I | GCAGC | 2 cut(s) | 161, 749 |
| BstV2I | GAAGAC | 2 cut(s) | 1432, 1436 |
| BstX2I | RGATCY | 5 cut(s) | 280, 895, 1117, 1127, 1189 |
| BstYI | RGATCY | 5 cut(s) | 280, 895, 1117, 1127, 1189 |
| BsuI | GTATCC | 1 cut(s) | 1282 |
| BsuRI | GGCC | 3 cut(s) | 45, 123, 929 |
| BtgI | CCRYGG | 1 cut(s) | 392 |
| BtrI | CACGTC | 2 cut(s) | 75, 137 |
| BtsCI | GGATG | 5 cut(s) | 328, 392, 577, 951, 970 |
| BtsI | GCAGTG | 2 cut(s) | 324, 432 |
| BtsIMutI | CAGTG | 4 cut(s) | 324, 432, 841, 849 |
| Cac8I | GCNNGC | 2 cut(s) | 121, 990 |
| CaiI | CAGNNNCTG | 1 cut(s) | 431 |
| CciI | TCATGA | 1 cut(s) | 1243 |
| CfoI | GCGC | 2 cut(s) | 317, 1263 |
| Cfr13I | GGNCC | 1 cut(s) | 1336 |
| Csp6I | GTAC | 1 cut(s) | 916 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1312, 1347 |
| CviAII | CATG | 7 cut(s) | 115, 560, 782, 810, 1238, 1244, 1484 |
| CviQI | GTAC | 1 cut(s) | 916 |
| DdeI | CTNAG | 5 cut(s) | 93, 679, 822, 882, 1160 |
| DpnI | GATC | 8 cut(s) | 127, 282, 556, 614, 897, 1119, 1129, 1191 |
| DpnII | GATC | 8 cut(s) | 125, 280, 554, 612, 895, 1117, 1127, 1189 |
| Eco130I | CCWWGG | 1 cut(s) | 647 |
| Eco147I | AGGCCT | 1 cut(s) | 45 |
| Eco24I | GRGCYC | 1 cut(s) | 501 |
| Eco47I | GGWCC | 1 cut(s) | 1336 |
| EcoT14I | CCWWGG | 1 cut(s) | 647 |
| EcoT38I | GRGCYC | 1 cut(s) | 501 |
| ErhI | CCWWGG | 1 cut(s) | 647 |
| Esp3I | CGTCTC | 1 cut(s) | 127 |
| FaeI | CATG | 7 cut(s) | 118, 563, 785, 813, 1241, 1247, 1487 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 700, 732 |
| FaqI | GGGAC | 2 cut(s) | 853, 879 |
| FatI | CATG | 7 cut(s) | 114, 559, 781, 809, 1237, 1243, 1483 |
| FauI | CCCGC | 2 cut(s) | 856, 1142 |
| FblI | GTMKAC | 1 cut(s) | 1346 |
| Fnu4HI | GCNGC | 4 cut(s) | 150, 153, 763, 927 |
| FokI | GGATG | 5 cut(s) | 335, 399, 584, 958, 977 |
| FriOI | GRGCYC | 1 cut(s) | 501 |
| Fsp4HI | GCNGC | 4 cut(s) | 150, 153, 763, 927 |
| FspBI | CTAG | 2 cut(s) | 759, 989 |
| FspI | TGCGCA | 1 cut(s) | 316 |
| GlaI | GCGC | 2 cut(s) | 316, 1262 |
| GluI | GCNGC | 4 cut(s) | 150, 153, 763, 927 |
| GsuI | CTGGAG | 1 cut(s) | 890 |
| HaeIII | GGCC | 3 cut(s) | 45, 123, 929 |
| HapII | CCGG | 5 cut(s) | 58, 767, 935, 977, 1121 |
| HhaI | GCGC | 2 cut(s) | 317, 1263 |
| Hin1II | CATG | 7 cut(s) | 118, 563, 785, 813, 1241, 1247, 1487 |
| Hin6I | GCGC | 2 cut(s) | 315, 1261 |
| HinP1I | GCGC | 2 cut(s) | 315, 1261 |
| HinfI | GANTC | 6 cut(s) | 470, 995, 1088, 1144, 1233, 1450 |
| HpaII | CCGG | 5 cut(s) | 58, 767, 935, 977, 1121 |
| HphI | GGTGA | 5 cut(s) | 388, 630, 631, 673, 924 |
| Hpy166II | GTNNAC | 6 cut(s) | 69, 306, 396, 670, 1321, 1347 |
| Hpy188I | TCNGA | 6 cut(s) | 331, 358, 445, 494, 1161, 1449 |
| Hpy188III | TCNNGA | 4 cut(s) | 565, 881, 1052, 1244 |
| Hpy8I | GTNNAC | 6 cut(s) | 69, 306, 396, 670, 1321, 1347 |
| Hpy99I | CGWCG | 1 cut(s) | 76 |
| HpyAV | CCTTC | 5 cut(s) | 44, 271, 658, 766, 1130 |
| HpyCH4III | ACNGT | 4 cut(s) | 548, 836, 844, 1096 |
| HpyCH4IV | ACGT | 2 cut(s) | 74, 136 |
| HpyCH4V | TGCA | 4 cut(s) | 149, 208, 382, 1483 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 146 |
| HpyF3I | CTNAG | 5 cut(s) | 93, 679, 822, 882, 1160 |
| HpySE526I | ACGT | 2 cut(s) | 74, 136 |
| Hsp92II | CATG | 7 cut(s) | 118, 563, 785, 813, 1241, 1247, 1487 |
| HspAI | GCGC | 2 cut(s) | 315, 1261 |
| Kzo9I | GATC | 8 cut(s) | 125, 280, 554, 612, 895, 1117, 1127, 1189 |
| LmnI | GCTCC | 3 cut(s) | 504, 889, 1200 |
| Lsp1109I | GCAGC | 2 cut(s) | 161, 749 |
| LweI | GCATC | 4 cut(s) | 217, 369, 955, 1195 |
| MaeI | CTAG | 2 cut(s) | 759, 989 |
| MaeII | ACGT | 2 cut(s) | 74, 136 |
| MaeIII | GTNAC | 1 cut(s) | 427 |
| MalI | GATC | 8 cut(s) | 127, 282, 556, 614, 897, 1119, 1129, 1191 |
| MboI | GATC | 8 cut(s) | 125, 280, 554, 612, 895, 1117, 1127, 1189 |
| MboII | GAAGA | 4 cut(s) | 712, 1034, 1436, 1437 |
| MfeI | CAATTG | 1 cut(s) | 1181 |
| MflI | RGATCY | 5 cut(s) | 280, 895, 1117, 1127, 1189 |
| MhlI | GDGCHC | 3 cut(s) | 142, 234, 501 |
| MluCI | AATT | 5 cut(s) | 352, 359, 537, 874, 1181 |
| MmeI | TCCRAC | 2 cut(s) | 87, 202 |
| MseI | TTAA | 6 cut(s) | 267, 516, 627, 1064, 1076, 1223 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1242 |
| MspA1I | CMGCKG | 1 cut(s) | 152 |
| MspI | CCGG | 5 cut(s) | 58, 767, 935, 977, 1121 |
| MspR9I | CCNGG | 3 cut(s) | 767, 977, 1122 |
| MunI | CAATTG | 1 cut(s) | 1181 |
| MvnI | CGCG | 3 cut(s) | 27, 1149, 1261 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 146 |
| NciI | CCSGG | 3 cut(s) | 767, 977, 1122 |
| NdeII | GATC | 8 cut(s) | 125, 280, 554, 612, 895, 1117, 1127, 1189 |
| NheI | GCTAGC | 1 cut(s) | 988 |
| NlaIII | CATG | 7 cut(s) | 118, 563, 785, 813, 1241, 1247, 1487 |
| NlaIV | GGNNCC | 4 cut(s) | 500, 819, 1129, 1337 |
| NmuCI | GTSAC | 1 cut(s) | 427 |
| NsbI | TGCGCA | 1 cut(s) | 316 |
| NspI | RCATGY | 3 cut(s) | 563, 813, 1487 |
| NspV | TTCGAA | 1 cut(s) | 1476 |
| PagI | TCATGA | 1 cut(s) | 1243 |
| PceI | AGGCCT | 1 cut(s) | 45 |
| PciI | ACATGT | 2 cut(s) | 559, 809 |
| PfeI | GAWTC | 6 cut(s) | 470, 995, 1088, 1144, 1233, 1450 |
| PkrI | GCNGC | 4 cut(s) | 151, 154, 764, 928 |
| PscI | ACATGT | 2 cut(s) | 559, 809 |
| PspN4I | GGNNCC | 4 cut(s) | 500, 819, 1129, 1337 |
| PspPI | GGNCC | 1 cut(s) | 1336 |
| PstI | CTGCAG | 1 cut(s) | 151 |
| PstNI | CAGNNNCTG | 1 cut(s) | 431 |
| PsuI | RGATCY | 5 cut(s) | 280, 895, 1117, 1127, 1189 |
| RsaI | GTAC | 1 cut(s) | 917 |
| RsaNI | GTAC | 1 cut(s) | 916 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1242 |
| SaqAI | TTAA | 6 cut(s) | 267, 516, 627, 1064, 1076, 1223 |
| SatI | GCNGC | 4 cut(s) | 150, 153, 763, 927 |
| Sau3AI | GATC | 8 cut(s) | 125, 280, 554, 612, 895, 1117, 1127, 1189 |
| Sau96I | GGNCC | 1 cut(s) | 1336 |
| ScrFI | CCNGG | 3 cut(s) | 767, 977, 1122 |
| SduI | GDGCHC | 3 cut(s) | 142, 234, 501 |
| SfaNI | GCATC | 4 cut(s) | 217, 369, 955, 1195 |
| SfcI | CTRYAG | 2 cut(s) | 147, 1267 |
| SfuI | TTCGAA | 1 cut(s) | 1476 |
| SinI | GGWCC | 1 cut(s) | 1336 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1242 |
| SmlI | CTYRAG | 1 cut(s) | 448 |
| SmoI | CTYRAG | 1 cut(s) | 448 |
| Sse9I | AATT | 5 cut(s) | 352, 359, 537, 874, 1181 |
| SseBI | AGGCCT | 1 cut(s) | 45 |
| SsiI | CCGC | 7 cut(s) | 25, 152, 863, 913, 926, 992, 1149 |
| SspMI | CTAG | 2 cut(s) | 759, 989 |
| StuI | AGGCCT | 1 cut(s) | 45 |
| StyD4I | CCNGG | 3 cut(s) | 765, 975, 1120 |
| StyI | CCWWGG | 1 cut(s) | 647 |
| TaaI | ACNGT | 4 cut(s) | 548, 836, 844, 1096 |
| TaiI | ACGT | 2 cut(s) | 77, 139 |
| TaqI | TCGA | 2 cut(s) | 1393, 1476 |
| TasI | AATT | 5 cut(s) | 352, 359, 537, 874, 1181 |
| TauI | GCSGC | 2 cut(s) | 155, 929 |
| TfiI | GAWTC | 6 cut(s) | 470, 995, 1088, 1144, 1233, 1450 |
| Tru1I | TTAA | 6 cut(s) | 267, 516, 627, 1064, 1076, 1223 |
| Tru9I | TTAA | 6 cut(s) | 267, 516, 627, 1064, 1076, 1223 |
| TscAI | CASTG | 4 cut(s) | 324, 432, 841, 849 |
| TseFI | GTSAC | 1 cut(s) | 427 |
| TseI | GCWGC | 2 cut(s) | 149, 762 |
| Tsp45I | GTSAC | 1 cut(s) | 427 |
| TspDTI | ATGAA | 3 cut(s) | 720, 798, 1232 |
| TspGWI | ACGGA | 2 cut(s) | 381, 584 |
| TspRI | CASTG | 4 cut(s) | 324, 432, 841, 849 |
| VpaK11BI | GGWCC | 1 cut(s) | 1336 |
| XapI | RAATTY | 1 cut(s) | 874 |
| XceI | RCATGY | 3 cut(s) | 563, 813, 1487 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 648 |
| XmiI | GTMKAC | 1 cut(s) | 1346 |
| XspI | CTAG | 2 cut(s) | 759, 989 |