Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 58 - 127 | 1.8e-11 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 229 |
| AciI | CCGC | 4 cut(s) | 125, 320, 682, 685 |
| AclWI | GGATC | 2 cut(s) | 330, 440 |
| AcoI | YGGCCR | 1 cut(s) | 499 |
| AcsI | RAATTY | 2 cut(s) | 283, 841 |
| AcuI | CTGAAG | 1 cut(s) | 756 |
| AcyI | GRCGYC | 1 cut(s) | 226 |
| AfaI | GTAC | 1 cut(s) | 384 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 392, 753 |
| AgsI | TTSAA | 2 cut(s) | 731, 861 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 148 |
| AjiI | CACGTC | 1 cut(s) | 92 |
| AjnI | CCWGG | 3 cut(s) | 96, 105, 350 |
| AluBI | AGCT | 2 cut(s) | 560, 568 |
| AluI | AGCT | 2 cut(s) | 560, 568 |
| Alw26I | GTCTC | 3 cut(s) | 632, 682, 848 |
| AlwI | GGATC | 2 cut(s) | 330, 440 |
| Ama87I | CYCGRG | 2 cut(s) | 406, 695 |
| AoxI | GGCC | 1 cut(s) | 499 |
| ApeKI | GCWGC | 1 cut(s) | 25 |
| ApoI | RAATTY | 2 cut(s) | 283, 841 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 216, 248 |
| AspS9I | GGNCC | 2 cut(s) | 187, 872 |
| AsuC2I | CCSGG | 3 cut(s) | 407, 408, 651 |
| AsuHPI | GGTGA | 1 cut(s) | 92 |
| AvaI | CYCGRG | 2 cut(s) | 406, 695 |
| AvaII | GGWCC | 2 cut(s) | 187, 872 |
| BalI | TGGCCA | 1 cut(s) | 501 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 464, 496, 841, 873 |
| BauI | CACGAG | 1 cut(s) | 176 |
| BbsI | GAAGAC | 1 cut(s) | 467 |
| BbvI | GCAGC | 1 cut(s) | 12 |
| BccI | CCATC | 2 cut(s) | 58, 391 |
| BciT130I | CCWGG | 3 cut(s) | 98, 107, 352 |
| BcnI | CCSGG | 3 cut(s) | 407, 408, 651 |
| BcoDI | GTCTC | 3 cut(s) | 632, 682, 848 |
| BfaI | CTAG | 2 cut(s) | 374, 753 |
| BfmI | CTRYAG | 2 cut(s) | 26, 387 |
| BisI | GCNGC | 2 cut(s) | 26, 683 |
| BlsI | GCNGC | 2 cut(s) | 27, 684 |
| Bme1390I | CCNGG | 6 cut(s) | 98, 107, 352, 407, 408, 651 |
| Bme18I | GGWCC | 2 cut(s) | 187, 872 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 148 |
| BmeT110I | CYCGRG | 2 cut(s) | 406, 695 |
| BmgBI | CACGTC | 1 cut(s) | 92 |
| BmgT120I | GGNCC | 2 cut(s) | 187, 872 |
| BmiI | GGNNCC | 1 cut(s) | 873 |
| BmrFI | CCNGG | 6 cut(s) | 98, 107, 352, 407, 408, 651 |
| BmsI | GCATC | 4 cut(s) | 307, 550, 765, 929 |
| BpiI | GAAGAC | 1 cut(s) | 467 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 907, 939 |
| Bpu10I | CCTNAGC | 1 cut(s) | 564 |
| BpuMI | CCSGG | 3 cut(s) | 407, 408, 651 |
| BsaBI | GATNNNNATC | 1 cut(s) | 321 |
| BsaHI | GRCGYC | 1 cut(s) | 226 |
| BsaI | GGTCTC | 1 cut(s) | 632 |
| BsaJI | CCNNGG | 3 cut(s) | 350, 406, 650 |
| BsaWI | WCCGGW | 1 cut(s) | 845 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 392, 753 |
| Bse8I | GATNNNNATC | 1 cut(s) | 321 |
| BseBI | CCWGG | 3 cut(s) | 98, 107, 352 |
| BseDI | CCNNGG | 3 cut(s) | 350, 406, 650 |
| BseGI | GGATG | 4 cut(s) | 69, 115, 402, 481 |
| BseJI | GATNNNNATC | 1 cut(s) | 321 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 392, 753 |
| BseMII | CTCAG | 2 cut(s) | 555, 560 |
| BseRI | GAGGAG | 1 cut(s) | 83 |
| BseXI | GCAGC | 1 cut(s) | 12 |
| BshFI | GGCC | 1 cut(s) | 501 |
| BsiHKCI | CYCGRG | 2 cut(s) | 406, 695 |
| BsiSI | CCGG | 3 cut(s) | 407, 650, 846 |
| BslFI | GGGAC | 2 cut(s) | 333, 885 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 392, 753 |
| BsmAI | GTCTC | 3 cut(s) | 632, 682, 848 |
| BsmFI | GGGAC | 2 cut(s) | 333, 885 |
| BsnI | GGCC | 1 cut(s) | 501 |
| Bso31I | GGTCTC | 1 cut(s) | 632 |
| BsoBI | CYCGRG | 2 cut(s) | 406, 695 |
| Bsp143I | GATC | 2 cut(s) | 322, 432 |
| BspACI | CCGC | 4 cut(s) | 125, 320, 682, 685 |
| BspANI | GGCC | 1 cut(s) | 501 |
| BspCNI | CTCAG | 2 cut(s) | 556, 561 |
| BspLI | GGNNCC | 1 cut(s) | 873 |
| BspMAI | CTGCAG | 1 cut(s) | 30 |
| BspPI | GGATC | 2 cut(s) | 330, 440 |
| BspTNI | GGTCTC | 1 cut(s) | 632 |
| BssECI | CCNNGG | 3 cut(s) | 350, 406, 650 |
| BssMI | GATC | 2 cut(s) | 322, 432 |
| BssNI | GRCGYC | 1 cut(s) | 226 |
| BssSI | CACGAG | 1 cut(s) | 176 |
| Bst2BI | CACGAG | 1 cut(s) | 176 |
| Bst2UI | CCWGG | 3 cut(s) | 98, 107, 352 |
| Bst4CI | ACNGT | 4 cut(s) | 22, 136, 586, 643 |
| Bst6I | CTCTTC | 1 cut(s) | 908 |
| BstACI | GRCGYC | 1 cut(s) | 226 |
| BstC8I | GCNNGC | 1 cut(s) | 30 |
| BstDEI | CTNAG | 2 cut(s) | 564, 569 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 751 |
| BstF5I | GGATG | 4 cut(s) | 69, 115, 402, 481 |
| BstKTI | GATC | 2 cut(s) | 325, 435 |
| BstMAI | GTCTC | 3 cut(s) | 632, 682, 848 |
| BstMBI | GATC | 2 cut(s) | 322, 432 |
| BstNI | CCWGG | 3 cut(s) | 98, 107, 352 |
| BstSCI | CCNGG | 6 cut(s) | 96, 105, 350, 405, 406, 649 |
| BstSFI | CTRYAG | 2 cut(s) | 26, 387 |
| BstV1I | GCAGC | 1 cut(s) | 12 |
| BstV2I | GAAGAC | 1 cut(s) | 467 |
| BsuRI | GGCC | 1 cut(s) | 501 |
| BtrI | CACGTC | 1 cut(s) | 92 |
| BtsCI | GGATG | 4 cut(s) | 69, 115, 402, 481 |
| BtsIMutI | CAGTG | 1 cut(s) | 551 |
| Cac8I | GCNNGC | 1 cut(s) | 30 |
| Cfr13I | GGNCC | 2 cut(s) | 187, 872 |
| Cfr9I | CCCGGG | 1 cut(s) | 406 |
| Csp6I | GTAC | 1 cut(s) | 383 |
| CviJI | RGCY | 6 cut(s) | 175, 247, 501, 560, 568, 706 |
| CviKI_1 | RGCY | 6 cut(s) | 175, 247, 501, 560, 568, 706 |
| CviQI | GTAC | 1 cut(s) | 383 |
| DdeI | CTNAG | 2 cut(s) | 564, 569 |
| DpnI | GATC | 2 cut(s) | 324, 434 |
| DpnII | GATC | 2 cut(s) | 322, 432 |
| DraI | TTTAAA | 1 cut(s) | 310 |
| DriI | GACNNNNNGTC | 1 cut(s) | 148 |
| EaeI | YGGCCR | 1 cut(s) | 499 |
| Eam1104I | CTCTTC | 1 cut(s) | 908 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 148 |
| EarI | CTCTTC | 1 cut(s) | 908 |
| EciI | GGCGGA | 1 cut(s) | 700 |
| Eco31I | GGTCTC | 1 cut(s) | 632 |
| Eco47I | GGWCC | 2 cut(s) | 187, 872 |
| Eco57I | CTGAAG | 1 cut(s) | 756 |
| Eco88I | CYCGRG | 2 cut(s) | 406, 695 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 751 |
| EcoO109I | RGGNCCY | 2 cut(s) | 187, 872 |
| EcoRI | GAATTC | 1 cut(s) | 841 |
| EcoRII | CCWGG | 3 cut(s) | 96, 105, 350 |
| EcoT22I | ATGCAT | 1 cut(s) | 884 |
| FaiI | YATR | 8 cut(s) | 18, 131, 269, 329, 360, 496, 498, 522 |
| FaqI | GGGAC | 2 cut(s) | 333, 885 |
| Fnu4HI | GCNGC | 2 cut(s) | 26, 683 |
| FokI | GGATG | 4 cut(s) | 76, 122, 409, 488 |
| Fsp4HI | GCNGC | 2 cut(s) | 26, 683 |
| FspBI | CTAG | 2 cut(s) | 374, 753 |
| GluI | GCNGC | 2 cut(s) | 26, 683 |
| HaeIII | GGCC | 1 cut(s) | 501 |
| HapII | CCGG | 3 cut(s) | 407, 650, 846 |
| Hin1I | GRCGYC | 1 cut(s) | 226 |
| HincII | GTYRAC | 3 cut(s) | 57, 208, 403 |
| HindII | GTYRAC | 3 cut(s) | 57, 208, 403 |
| HinfI | GANTC | 4 cut(s) | 215, 415, 424, 611 |
| HpaII | CCGG | 3 cut(s) | 407, 650, 846 |
| HphI | GGTGA | 1 cut(s) | 92 |
| Hpy166II | GTNNAC | 4 cut(s) | 57, 208, 403, 481 |
| Hpy188I | TCNGA | 5 cut(s) | 224, 289, 616, 647, 772 |
| Hpy188III | TCNNGA | 2 cut(s) | 436, 563 |
| Hpy8I | GTNNAC | 4 cut(s) | 57, 208, 403, 481 |
| Hpy99I | CGWCG | 3 cut(s) | 96, 228, 423 |
| HpyAV | CCTTC | 8 cut(s) | 178, 247, 423, 447, 466, 601, 898, 928 |
| HpyCH4III | ACNGT | 4 cut(s) | 22, 136, 586, 643 |
| HpyCH4IV | ACGT | 4 cut(s) | 91, 210, 226, 464 |
| HpyCH4V | TGCA | 7 cut(s) | 28, 161, 508, 778, 818, 882, 920 |
| HpyF3I | CTNAG | 2 cut(s) | 564, 569 |
| HpySE526I | ACGT | 4 cut(s) | 91, 210, 226, 464 |
| Hsp92I | GRCGYC | 1 cut(s) | 226 |
| Kzo9I | GATC | 2 cut(s) | 322, 432 |
| LmnI | GCTCC | 3 cut(s) | 289, 565, 592 |
| Lsp1109I | GCAGC | 1 cut(s) | 12 |
| LweI | GCATC | 4 cut(s) | 307, 550, 765, 929 |
| MaeI | CTAG | 2 cut(s) | 374, 753 |
| MaeII | ACGT | 4 cut(s) | 91, 210, 226, 464 |
| MalI | GATC | 2 cut(s) | 324, 434 |
| MboI | GATC | 2 cut(s) | 322, 432 |
| MboII | GAAGA | 4 cut(s) | 128, 472, 629, 925 |
| MfeI | CAATTG | 1 cut(s) | 813 |
| MlsI | TGGCCA | 1 cut(s) | 501 |
| MluCI | AATT | 5 cut(s) | 283, 528, 670, 813, 841 |
| MluNI | TGGCCA | 1 cut(s) | 501 |
| MlyI | GAGTC | 2 cut(s) | 224, 605 |
| MmeI | TCCRAC | 1 cut(s) | 247 |
| MnlI | CCTC | 9 cut(s) | 61, 64, 159, 324, 592, 706, 757, 802, 885 |
| Mox20I | TGGCCA | 1 cut(s) | 501 |
| Mph1103I | ATGCAT | 1 cut(s) | 884 |
| MscI | TGGCCA | 1 cut(s) | 501 |
| MseI | TTAA | 2 cut(s) | 309, 527 |
| Msp20I | TGGCCA | 1 cut(s) | 501 |
| MspI | CCGG | 3 cut(s) | 407, 650, 846 |
| MspR9I | CCNGG | 6 cut(s) | 98, 107, 352, 407, 408, 651 |
| MunI | CAATTG | 1 cut(s) | 813 |
| MvaI | CCWGG | 3 cut(s) | 98, 107, 352 |
| NciI | CCSGG | 3 cut(s) | 407, 408, 651 |
| NdeII | GATC | 2 cut(s) | 322, 432 |
| NlaIV | GGNNCC | 1 cut(s) | 873 |
| NsiI | ATGCAT | 1 cut(s) | 884 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 232, 424 |
| PfeI | GAWTC | 2 cut(s) | 415, 424 |
| PflFI | GACNNNGTC | 1 cut(s) | 466 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 2 cut(s) | 27, 684 |
| PleI | GAGTC | 2 cut(s) | 223, 605 |
| PpsI | GAGTC | 2 cut(s) | 223, 605 |
| PpuMI | RGGWCCY | 2 cut(s) | 187, 872 |
| Psp5II | RGGWCCY | 2 cut(s) | 187, 872 |
| Psp6I | CCWGG | 3 cut(s) | 96, 105, 350 |
| PspGI | CCWGG | 3 cut(s) | 96, 105, 350 |
| PspN4I | GGNNCC | 1 cut(s) | 873 |
| PspPI | GGNCC | 2 cut(s) | 187, 872 |
| PspPPI | RGGWCCY | 2 cut(s) | 187, 872 |
| PstI | CTGCAG | 1 cut(s) | 30 |
| PsyI | GACNNNGTC | 1 cut(s) | 466 |
| RsaI | GTAC | 1 cut(s) | 384 |
| RsaNI | GTAC | 1 cut(s) | 383 |
| SaqAI | TTAA | 2 cut(s) | 309, 527 |
| SatI | GCNGC | 2 cut(s) | 26, 683 |
| Sau3AI | GATC | 2 cut(s) | 322, 432 |
| Sau96I | GGNCC | 2 cut(s) | 187, 872 |
| SchI | GAGTC | 2 cut(s) | 224, 605 |
| ScrFI | CCNGG | 6 cut(s) | 98, 107, 352, 407, 408, 651 |
| SfaNI | GCATC | 4 cut(s) | 307, 550, 765, 929 |
| SfcI | CTRYAG | 2 cut(s) | 26, 387 |
| SinI | GGWCC | 2 cut(s) | 187, 872 |
| SmaI | CCCGGG | 1 cut(s) | 408 |
| Sse9I | AATT | 5 cut(s) | 283, 528, 670, 813, 841 |
| SsiI | CCGC | 4 cut(s) | 125, 320, 682, 685 |
| SspMI | CTAG | 2 cut(s) | 374, 753 |
| StyD4I | CCNGG | 6 cut(s) | 96, 105, 350, 405, 406, 649 |
| TaaI | ACNGT | 4 cut(s) | 22, 136, 586, 643 |
| TaiI | ACGT | 4 cut(s) | 94, 213, 229, 467 |
| TaqI | TCGA | 4 cut(s) | 418, 427, 470, 749 |
| TaqII | GACCGA | 1 cut(s) | 541 |
| TasI | AATT | 5 cut(s) | 283, 528, 670, 813, 841 |
| TauI | GCSGC | 1 cut(s) | 685 |
| TfiI | GAWTC | 2 cut(s) | 415, 424 |
| Tru1I | TTAA | 2 cut(s) | 309, 527 |
| Tru9I | TTAA | 2 cut(s) | 309, 527 |
| TscAI | CASTG | 1 cut(s) | 551 |
| TseI | GCWGC | 1 cut(s) | 25 |
| TspDTI | ATGAA | 1 cut(s) | 917 |
| TspGWI | ACGGA | 2 cut(s) | 76, 436 |
| TspMI | CCCGGG | 1 cut(s) | 406 |
| TspRI | CASTG | 1 cut(s) | 551 |
| Tth111I | GACNNNGTC | 1 cut(s) | 466 |
| VpaK11BI | GGWCC | 2 cut(s) | 187, 872 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 751 |
| XapI | RAATTY | 2 cut(s) | 283, 841 |
| XmaI | CCCGGG | 1 cut(s) | 406 |
| XspI | CTAG | 2 cut(s) | 374, 753 |
| ZraI | GACGTC | 1 cut(s) | 227 |
| Zsp2I | ATGCAT | 1 cut(s) | 884 |