ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 353 |
| Acc16I | TGCGCA | 1 cut(s) | 524 |
| AccB1I | GGYRCC | 2 cut(s) | 598, 916 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 933 |
| AccII | CGCG | 2 cut(s) | 786, 788 |
| AccIII | TCCGGA | 1 cut(s) | 1204 |
| AciI | CCGC | 4 cut(s) | 119, 338, 416, 603 |
| AclI | AACGTT | 1 cut(s) | 1212 |
| AclWI | GGATC | 2 cut(s) | 353, 458 |
| AcoI | YGGCCR | 1 cut(s) | 768 |
| AcsI | RAATTY | 1 cut(s) | 1145 |
| AcuI | CTGAAG | 1 cut(s) | 737 |
| AcyI | GRCGYC | 1 cut(s) | 917 |
| AfaI | GTAC | 2 cut(s) | 229, 675 |
| AfeI | AGCGCT | 1 cut(s) | 324 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 109, 406, 780, 933, 1082, 1204 |
| AflII | CTTAAG | 1 cut(s) | 661 |
| AgsI | TTSAA | 3 cut(s) | 317, 573, 1001 |
| AhlI | ACTAGT | 1 cut(s) | 22 |
| AjnI | CCWGG | 3 cut(s) | 5, 641, 1076 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 155, 187, 1137, 1169 |
| AluBI | AGCT | 4 cut(s) | 504, 612, 660, 1191 |
| AluI | AGCT | 4 cut(s) | 504, 612, 660, 1191 |
| Alw21I | GWGCWC | 1 cut(s) | 304 |
| Alw26I | GTCTC | 3 cut(s) | 222, 721, 1091 |
| AlwI | GGATC | 2 cut(s) | 353, 458 |
| Aor13HI | TCCGGA | 1 cut(s) | 1204 |
| Aor51HI | AGCGCT | 1 cut(s) | 324 |
| AoxI | GGCC | 1 cut(s) | 768 |
| ApeKI | GCWGC | 4 cut(s) | 501, 504, 605, 612 |
| ApoI | RAATTY | 1 cut(s) | 1145 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 129 |
| AspLEI | GCGC | 5 cut(s) | 325, 525, 786, 788, 919 |
| AsuC2I | CCSGG | 3 cut(s) | 530, 579, 735 |
| AsuHPI | GGTGA | 5 cut(s) | 194, 352, 753, 884, 1172 |
| BaeGI | GKGCMC | 1 cut(s) | 603 |
| BalI | TGGCCA | 1 cut(s) | 770 |
| BanI | GGYRCC | 2 cut(s) | 598, 916 |
| BanII | GRGCYC | 1 cut(s) | 642 |
| BauI | CACGAG | 1 cut(s) | 176 |
| Bbv12I | GWGCWC | 1 cut(s) | 304 |
| BbvI | GCAGC | 4 cut(s) | 491, 513, 592, 599 |
| BccI | CCATC | 1 cut(s) | 803 |
| BceAI | ACGGC | 1 cut(s) | 161 |
| BciT130I | CCWGG | 3 cut(s) | 7, 643, 1078 |
| BclI | TGATCA | 2 cut(s) | 57, 222 |
| BcnI | CCSGG | 3 cut(s) | 530, 579, 735 |
| BcoDI | GTCTC | 3 cut(s) | 222, 721, 1091 |
| BcuI | ACTAGT | 1 cut(s) | 22 |
| BfaI | CTAG | 1 cut(s) | 23 |
| BfmI | CTRYAG | 2 cut(s) | 976, 1105 |
| BfoI | RGCGCY | 2 cut(s) | 326, 920 |
| BfrI | CTTAAG | 1 cut(s) | 661 |
| BglII | AGATCT | 1 cut(s) | 272 |
| BisI | GCNGC | 4 cut(s) | 502, 505, 606, 613 |
| BlsI | GCNGC | 4 cut(s) | 503, 506, 607, 614 |
| BmcAI | AGTACT | 1 cut(s) | 229 |
| Bme1390I | CCNGG | 6 cut(s) | 7, 530, 579, 643, 735, 1078 |
| BmiI | GGNNCC | 7 cut(s) | 11, 249, 398, 600, 631, 918, 1036 |
| BmrFI | CCNGG | 6 cut(s) | 7, 530, 579, 643, 735, 1078 |
| BmrI | ACTGGG | 1 cut(s) | 450 |
| BmsI | GCATC | 6 cut(s) | 244, 420, 534, 689, 907, 1052 |
| BmuI | ACTGGG | 1 cut(s) | 450 |
| BpmI | CTGGAG | 2 cut(s) | 637, 906 |
| BpuMI | CCSGG | 3 cut(s) | 530, 579, 735 |
| Bsa29I | ATCGAT | 1 cut(s) | 540 |
| BsaHI | GRCGYC | 1 cut(s) | 917 |
| BsaI | GGTCTC | 1 cut(s) | 1091 |
| BsaJI | CCNNGG | 4 cut(s) | 305, 641, 833, 1076 |
| BsaWI | WCCGGW | 2 cut(s) | 751, 1204 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 945, 975 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 109, 406, 780, 933, 1082, 1204 |
| Bse118I | RCCGGY | 2 cut(s) | 894, 1065 |
| Bse1I | ACTGG | 2 cut(s) | 445, 1198 |
| BseAI | TCCGGA | 1 cut(s) | 1204 |
| BseBI | CCWGG | 3 cut(s) | 7, 643, 1078 |
| BseCI | ATCGAT | 1 cut(s) | 540 |
| BseDI | CCNNGG | 4 cut(s) | 305, 641, 833, 1076 |
| BseGI | GGATG | 3 cut(s) | 411, 525, 898 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 109, 406, 780, 933, 1082, 1204 |
| BseMII | CTCAG | 1 cut(s) | 99 |
| BseNI | ACTGG | 2 cut(s) | 445, 1198 |
| BsePI | GCGCGC | 1 cut(s) | 784 |
| BseRI | GAGGAG | 3 cut(s) | 6, 83, 953 |
| BseSI | GKGCMC | 1 cut(s) | 603 |
| BseXI | GCAGC | 4 cut(s) | 491, 513, 592, 599 |
| BseYI | CCCAGC | 1 cut(s) | 982 |
| BsgI | GTGCAG | 2 cut(s) | 47, 1084 |
| Bsh1236I | CGCG | 2 cut(s) | 786, 788 |
| Bsh1285I | CGRYCG | 2 cut(s) | 752, 1009 |
| BshFI | GGCC | 1 cut(s) | 770 |
| BshNI | GGYRCC | 2 cut(s) | 598, 916 |
| BshVI | ATCGAT | 1 cut(s) | 540 |
| BsiEI | CGRYCG | 2 cut(s) | 752, 1009 |
| BsiHKAI | GWGCWC | 1 cut(s) | 304 |
| BsiSI | CCGG | 8 cut(s) | 529, 578, 735, 752, 895, 914, 1066, 1205 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 109, 406, 780, 933, 1082, 1204 |
| BsmAI | GTCTC | 3 cut(s) | 222, 721, 1091 |
| BsmBI | CGTCTC | 1 cut(s) | 721 |
| BsnI | GGCC | 1 cut(s) | 770 |
| Bso31I | GGTCTC | 1 cut(s) | 1091 |
| Bsp1286I | GDGCHC | 3 cut(s) | 304, 603, 642 |
| Bsp13I | TCCGGA | 1 cut(s) | 1204 |
| Bsp143I | GATC | 7 cut(s) | 57, 222, 272, 358, 450, 669, 1006 |
| BspACI | CCGC | 4 cut(s) | 119, 338, 416, 603 |
| BspANI | GGCC | 1 cut(s) | 770 |
| BspCNI | CTCAG | 1 cut(s) | 100 |
| BspDI | ATCGAT | 1 cut(s) | 540 |
| BspEI | TCCGGA | 1 cut(s) | 1204 |
| BspFNI | CGCG | 2 cut(s) | 786, 788 |
| BspLI | GGNNCC | 7 cut(s) | 11, 249, 398, 600, 631, 918, 1036 |
| BspPI | GGATC | 2 cut(s) | 353, 458 |
| BspT107I | GGYRCC | 2 cut(s) | 598, 916 |
| BspTI | CTTAAG | 1 cut(s) | 661 |
| BspTNI | GGTCTC | 1 cut(s) | 1091 |
| BsrFI | RCCGGY | 2 cut(s) | 894, 1065 |
| BsrI | ACTGG | 2 cut(s) | 445, 1198 |
| BssAI | RCCGGY | 2 cut(s) | 894, 1065 |
| BssECI | CCNNGG | 4 cut(s) | 305, 641, 833, 1076 |
| BssHII | GCGCGC | 1 cut(s) | 784 |
| BssMI | GATC | 7 cut(s) | 57, 222, 272, 358, 450, 669, 1006 |
| BssNI | GRCGYC | 1 cut(s) | 917 |
| BssSI | CACGAG | 1 cut(s) | 176 |
| BssT1I | CCWWGG | 1 cut(s) | 833 |
| Bst2BI | CACGAG | 1 cut(s) | 176 |
| Bst2UI | CCWGG | 3 cut(s) | 7, 643, 1078 |
| Bst4CI | ACNGT | 3 cut(s) | 306, 334, 350 |
| Bst6I | CTCTTC | 1 cut(s) | 713 |
| BstACI | GRCGYC | 1 cut(s) | 917 |
| BstAFI | CTTAAG | 1 cut(s) | 661 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 904 |
| BstC8I | GCNNGC | 4 cut(s) | 603, 610, 786, 1067 |
| BstDEI | CTNAG | 2 cut(s) | 108, 991 |
| BstDSI | CCRYGG | 1 cut(s) | 305 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 107 |
| BstF5I | GGATG | 3 cut(s) | 411, 525, 898 |
| BstFNI | CGCG | 2 cut(s) | 786, 788 |
| BstH2I | RGCGCY | 2 cut(s) | 326, 920 |
| BstHHI | GCGC | 5 cut(s) | 325, 525, 786, 788, 919 |
| BstKTI | GATC | 7 cut(s) | 60, 225, 275, 361, 453, 672, 1009 |
| BstMAI | GTCTC | 3 cut(s) | 222, 721, 1091 |
| BstMBI | GATC | 7 cut(s) | 57, 222, 272, 358, 450, 669, 1006 |
| BstMCI | CGRYCG | 2 cut(s) | 752, 1009 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 904, 923 |
| BstNI | CCWGG | 3 cut(s) | 7, 643, 1078 |
| BstSCI | CCNGG | 6 cut(s) | 5, 528, 577, 641, 733, 1076 |
| BstSFI | CTRYAG | 2 cut(s) | 976, 1105 |
| BstSLI | GKGCMC | 1 cut(s) | 603 |
| BstUI | CGCG | 2 cut(s) | 786, 788 |
| BstV1I | GCAGC | 4 cut(s) | 491, 513, 592, 599 |
| BstX2I | RGATCY | 1 cut(s) | 272 |
| BstYI | RGATCY | 1 cut(s) | 272 |
| Bsu15I | ATCGAT | 1 cut(s) | 540 |
| BsuRI | GGCC | 1 cut(s) | 770 |
| BsuTUI | ATCGAT | 1 cut(s) | 540 |
| BtgI | CCRYGG | 1 cut(s) | 305 |
| BtsCI | GGATG | 3 cut(s) | 411, 525, 898 |
| BtsIMutI | CAGTG | 1 cut(s) | 848 |
| Cac8I | GCNNGC | 4 cut(s) | 603, 610, 786, 1067 |
| CfoI | GCGC | 5 cut(s) | 325, 525, 786, 788, 919 |
| Cfr10I | RCCGGY | 2 cut(s) | 894, 1065 |
| ClaI | ATCGAT | 1 cut(s) | 540 |
| CseI | GACGC | 1 cut(s) | 1059 |
| Csp6I | GTAC | 2 cut(s) | 228, 674 |
| CviAII | CATG | 3 cut(s) | 483, 588, 845 |
| CviQI | GTAC | 2 cut(s) | 228, 674 |
| DdeI | CTNAG | 2 cut(s) | 108, 991 |
| DinI | GGCGCC | 1 cut(s) | 918 |
| DpnI | GATC | 7 cut(s) | 59, 224, 274, 360, 452, 671, 1008 |
| DpnII | GATC | 7 cut(s) | 57, 222, 272, 358, 450, 669, 1006 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 353 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 353 |
| EaeI | YGGCCR | 1 cut(s) | 768 |
| Eam1104I | CTCTTC | 1 cut(s) | 713 |
| EarI | CTCTTC | 1 cut(s) | 713 |
| Eco130I | CCWWGG | 1 cut(s) | 833 |
| Eco24I | GRGCYC | 1 cut(s) | 642 |
| Eco31I | GGTCTC | 1 cut(s) | 1091 |
| Eco47III | AGCGCT | 1 cut(s) | 324 |
| Eco57I | CTGAAG | 1 cut(s) | 737 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 107 |
| EcoRII | CCWGG | 3 cut(s) | 5, 641, 1076 |
| EcoT14I | CCWWGG | 1 cut(s) | 833 |
| EcoT38I | GRGCYC | 1 cut(s) | 642 |
| EgeI | GGCGCC | 1 cut(s) | 918 |
| EheI | GGCGCC | 1 cut(s) | 918 |
| ErhI | CCWWGG | 1 cut(s) | 833 |
| Esp3I | CGTCTC | 1 cut(s) | 721 |
| FaeI | CATG | 3 cut(s) | 486, 591, 848 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 155, 187 |
| FatI | CATG | 3 cut(s) | 482, 587, 844 |
| FauI | CCCGC | 2 cut(s) | 423, 610 |
| FbaI | TGATCA | 2 cut(s) | 57, 222 |
| Fnu4HI | GCNGC | 4 cut(s) | 502, 505, 606, 613 |
| FokI | GGATG | 3 cut(s) | 398, 512, 885 |
| FriOI | GRGCYC | 1 cut(s) | 642 |
| Fsp4HI | GCNGC | 4 cut(s) | 502, 505, 606, 613 |
| FspBI | CTAG | 1 cut(s) | 23 |
| FspI | TGCGCA | 1 cut(s) | 524 |
| GlaI | GCGC | 5 cut(s) | 324, 524, 785, 787, 918 |
| GluI | GCNGC | 4 cut(s) | 502, 505, 606, 613 |
| GsaI | CCCAGC | 1 cut(s) | 986 |
| GsuI | CTGGAG | 2 cut(s) | 637, 906 |
| HaeII | RGCGCY | 2 cut(s) | 326, 920 |
| HaeIII | GGCC | 1 cut(s) | 770 |
| HapII | CCGG | 8 cut(s) | 529, 578, 735, 752, 895, 914, 1066, 1205 |
| HgaI | GACGC | 1 cut(s) | 1059 |
| HhaI | GCGC | 5 cut(s) | 325, 525, 786, 788, 919 |
| Hin1I | GRCGYC | 1 cut(s) | 917 |
| Hin1II | CATG | 3 cut(s) | 486, 591, 848 |
| Hin6I | GCGC | 5 cut(s) | 323, 523, 784, 786, 917 |
| HinP1I | GCGC | 5 cut(s) | 323, 523, 784, 786, 917 |
| HincII | GTYRAC | 2 cut(s) | 192, 478 |
| HindII | GTYRAC | 2 cut(s) | 192, 478 |
| HinfI | GANTC | 3 cut(s) | 84, 215, 516 |
| HpaI | GTTAAC | 1 cut(s) | 478 |
| HpaII | CCGG | 8 cut(s) | 529, 578, 735, 752, 895, 914, 1066, 1205 |
| HphI | GGTGA | 5 cut(s) | 194, 352, 753, 884, 1172 |
| Hpy166II | GTNNAC | 3 cut(s) | 95, 192, 478 |
| Hpy188I | TCNGA | 3 cut(s) | 222, 401, 711 |
| Hpy188III | TCNNGA | 5 cut(s) | 251, 276, 297, 684, 1205 |
| Hpy8I | GTNNAC | 3 cut(s) | 95, 192, 478 |
| Hpy99I | CGWCG | 4 cut(s) | 814, 817, 874, 1053 |
| HpyAV | CCTTC | 4 cut(s) | 481, 774, 835, 899 |
| HpyCH4III | ACNGT | 3 cut(s) | 306, 334, 350 |
| HpyCH4IV | ACGT | 1 cut(s) | 1212 |
| HpyCH4V | TGCA | 7 cut(s) | 28, 257, 379, 559, 848, 907, 1101 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 904, 923 |
| HpyF3I | CTNAG | 2 cut(s) | 108, 991 |
| HpySE526I | ACGT | 1 cut(s) | 1212 |
| Hsp92I | GRCGYC | 1 cut(s) | 917 |
| Hsp92II | CATG | 3 cut(s) | 486, 591, 848 |
| HspAI | GCGC | 5 cut(s) | 323, 523, 784, 786, 917 |
| KasI | GGCGCC | 1 cut(s) | 916 |
| Kpn2I | TCCGGA | 1 cut(s) | 1204 |
| KroI | GCCGGC | 1 cut(s) | 1065 |
| KroNI | GCCGGC | 1 cut(s) | 1067 |
| Ksp22I | TGATCA | 2 cut(s) | 57, 222 |
| KspAI | GTTAAC | 1 cut(s) | 478 |
| Kzo9I | GATC | 7 cut(s) | 57, 222, 272, 358, 450, 669, 1006 |
| LmnI | GCTCC | 1 cut(s) | 402 |
| Lsp1109I | GCAGC | 4 cut(s) | 491, 513, 592, 599 |
| LweI | GCATC | 6 cut(s) | 244, 420, 534, 689, 907, 1052 |
| MaeI | CTAG | 1 cut(s) | 23 |
| MaeII | ACGT | 1 cut(s) | 1212 |
| MaeIII | GTNAC | 2 cut(s) | 340, 1055 |
| MalI | GATC | 7 cut(s) | 59, 224, 274, 360, 452, 671, 1008 |
| MboI | GATC | 7 cut(s) | 57, 222, 272, 358, 450, 669, 1006 |
| MboII | GAAGA | 7 cut(s) | 163, 446, 557, 730, 790, 793, 872 |
| MflI | RGATCY | 1 cut(s) | 272 |
| MhlI | GDGCHC | 3 cut(s) | 304, 603, 642 |
| MlsI | TGGCCA | 1 cut(s) | 770 |
| MluCI | AATT | 6 cut(s) | 185, 402, 573, 908, 1001, 1145 |
| MluNI | TGGCCA | 1 cut(s) | 770 |
| Mly113I | GGCGCC | 1 cut(s) | 917 |
| MlyI | GAGTC | 1 cut(s) | 224 |
| Mox20I | TGGCCA | 1 cut(s) | 770 |
| MroI | TCCGGA | 1 cut(s) | 1204 |
| MroNI | GCCGGC | 1 cut(s) | 1065 |
| MroXI | GAANNNNTTC | 1 cut(s) | 129 |
| MscI | TGGCCA | 1 cut(s) | 770 |
| MseI | TTAA | 3 cut(s) | 477, 662, 1216 |
| MslI | CAYNNNNRTG | 2 cut(s) | 530, 592 |
| Msp20I | TGGCCA | 1 cut(s) | 770 |
| MspA1I | CMGCKG | 2 cut(s) | 504, 605 |
| MspCI | CTTAAG | 1 cut(s) | 661 |
| MspI | CCGG | 8 cut(s) | 529, 578, 735, 752, 895, 914, 1066, 1205 |
| MspR9I | CCNGG | 6 cut(s) | 7, 530, 579, 643, 735, 1078 |
| MvaI | CCWGG | 3 cut(s) | 7, 643, 1078 |
| MvnI | CGCG | 2 cut(s) | 786, 788 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 904, 923 |
| NaeI | GCCGGC | 1 cut(s) | 1067 |
| NarI | GGCGCC | 1 cut(s) | 917 |
| NciI | CCSGG | 3 cut(s) | 530, 579, 735 |
| NdeII | GATC | 7 cut(s) | 57, 222, 272, 358, 450, 669, 1006 |
| NgoMIV | GCCGGC | 1 cut(s) | 1065 |
| NlaIII | CATG | 3 cut(s) | 486, 591, 848 |
| NlaIV | GGNNCC | 7 cut(s) | 11, 249, 398, 600, 631, 918, 1036 |
| NmuCI | GTSAC | 1 cut(s) | 340 |
| NsbI | TGCGCA | 1 cut(s) | 524 |
| PauI | GCGCGC | 1 cut(s) | 784 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 302, 354, 1057 |
| PdiI | GCCGGC | 1 cut(s) | 1067 |
| PdmI | GAANNNNTTC | 1 cut(s) | 129 |
| PfeI | GAWTC | 2 cut(s) | 84, 516 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 933 |
| PkrI | GCNGC | 4 cut(s) | 503, 506, 607, 614 |
| Ple19I | CGATCG | 1 cut(s) | 1009 |
| PleI | GAGTC | 1 cut(s) | 223 |
| PluTI | GGCGCC | 1 cut(s) | 920 |
| PpsI | GAGTC | 1 cut(s) | 223 |
| Psp1406I | AACGTT | 1 cut(s) | 1212 |
| Psp6I | CCWGG | 3 cut(s) | 5, 641, 1076 |
| PspFI | CCCAGC | 1 cut(s) | 982 |
| PspGI | CCWGG | 3 cut(s) | 5, 641, 1076 |
| PspN4I | GGNNCC | 7 cut(s) | 11, 249, 398, 600, 631, 918, 1036 |
| PsuI | RGATCY | 1 cut(s) | 272 |
| PteI | GCGCGC | 1 cut(s) | 784 |
| PvuI | CGATCG | 1 cut(s) | 1009 |
| PvuII | CAGCTG | 1 cut(s) | 504 |
| RsaI | GTAC | 2 cut(s) | 229, 675 |
| RsaNI | GTAC | 2 cut(s) | 228, 674 |
| RseI | CAYNNNNRTG | 2 cut(s) | 530, 592 |
| SaqAI | TTAA | 3 cut(s) | 477, 662, 1216 |
| SatI | GCNGC | 4 cut(s) | 502, 505, 606, 613 |
| Sau3AI | GATC | 7 cut(s) | 57, 222, 272, 358, 450, 669, 1006 |
| ScaI | AGTACT | 1 cut(s) | 229 |
| SchI | GAGTC | 1 cut(s) | 224 |
| ScrFI | CCNGG | 6 cut(s) | 7, 530, 579, 643, 735, 1078 |
| SduI | GDGCHC | 3 cut(s) | 304, 603, 642 |
| SfaNI | GCATC | 6 cut(s) | 244, 420, 534, 689, 907, 1052 |
| SfcI | CTRYAG | 2 cut(s) | 976, 1105 |
| SfoI | GGCGCC | 1 cut(s) | 918 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 530, 592 |
| SmlI | CTYRAG | 1 cut(s) | 661 |
| SmoI | CTYRAG | 1 cut(s) | 661 |
| SpeI | ACTAGT | 1 cut(s) | 22 |
| Sse9I | AATT | 6 cut(s) | 185, 402, 573, 908, 1001, 1145 |
| SsiI | CCGC | 4 cut(s) | 119, 338, 416, 603 |
| SspDI | GGCGCC | 1 cut(s) | 916 |
| SspI | AATATT | 1 cut(s) | 389 |
| SspMI | CTAG | 1 cut(s) | 23 |
| StyD4I | CCNGG | 6 cut(s) | 5, 528, 577, 641, 733, 1076 |
| StyI | CCWWGG | 1 cut(s) | 833 |
| TaaI | ACNGT | 3 cut(s) | 306, 334, 350 |
| TaiI | ACGT | 1 cut(s) | 1215 |
| TasI | AATT | 6 cut(s) | 185, 402, 573, 908, 1001, 1145 |
| TatI | WGTACW | 1 cut(s) | 227 |
| TfiI | GAWTC | 2 cut(s) | 84, 516 |
| Tru1I | TTAA | 3 cut(s) | 477, 662, 1216 |
| Tru9I | TTAA | 3 cut(s) | 477, 662, 1216 |
| TscAI | CASTG | 1 cut(s) | 855 |
| TseFI | GTSAC | 1 cut(s) | 340 |
| TseI | GCWGC | 4 cut(s) | 501, 504, 605, 612 |
| Tsp45I | GTSAC | 1 cut(s) | 340 |
| TspDTI | ATGAA | 4 cut(s) | 31, 558, 965, 1166 |
| TspGWI | ACGGA | 3 cut(s) | 642, 818, 870 |
| TspRI | CASTG | 1 cut(s) | 855 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 933 |
| Vha464I | CTTAAG | 1 cut(s) | 661 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 107 |
| XapI | RAATTY | 1 cut(s) | 1145 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 930 |
| XmnI | GAANNNNTTC | 1 cut(s) | 129 |
| XspI | CTAG | 1 cut(s) | 23 |
| ZrmI | AGTACT | 1 cut(s) | 229 |