ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 19 - 67 | 1.5e-08 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 604 |
| AccBSI | CCGCTC | 2 cut(s) | 397, 417 |
| AciI | CCGC | 4 cut(s) | 227, 332, 397, 415 |
| AclWI | GGATC | 1 cut(s) | 464 |
| AcsI | RAATTY | 1 cut(s) | 766 |
| AcuI | CTGAAG | 1 cut(s) | 666 |
| AfaI | GTAC | 1 cut(s) | 21 |
| AfeI | AGCGCT | 1 cut(s) | 703 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 203, 594 |
| AgsI | TTSAA | 4 cut(s) | 183, 533, 761, 848 |
| AhlI | ACTAGT | 1 cut(s) | 620 |
| AjnI | CCWGG | 1 cut(s) | 364 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 283, 315, 422, 437, 454, 469 |
| AluBI | AGCT | 4 cut(s) | 243, 337, 638, 862 |
| AluI | AGCT | 4 cut(s) | 243, 337, 638, 862 |
| AlwI | GGATC | 1 cut(s) | 464 |
| Aor51HI | AGCGCT | 1 cut(s) | 703 |
| AoxI | GGCC | 3 cut(s) | 585, 782, 823 |
| ApeKI | GCWGC | 5 cut(s) | 192, 407, 410, 677, 722 |
| ApoI | RAATTY | 1 cut(s) | 766 |
| AseI | ATTAAT | 1 cut(s) | 219 |
| AspLEI | GCGC | 2 cut(s) | 371, 704 |
| AspS9I | GGNCC | 3 cut(s) | 545, 656, 823 |
| AsuC2I | CCSGG | 2 cut(s) | 275, 595 |
| AsuHPI | GGTGA | 2 cut(s) | 575, 815 |
| AvaII | GGWCC | 2 cut(s) | 545, 656 |
| BauI | CACGAG | 1 cut(s) | 268 |
| BbsI | GAAGAC | 1 cut(s) | 108 |
| BbvI | GCAGC | 5 cut(s) | 179, 419, 422, 664, 709 |
| BccI | CCATC | 1 cut(s) | 834 |
| BciT130I | CCWGG | 1 cut(s) | 366 |
| BcnI | CCSGG | 2 cut(s) | 275, 595 |
| BcuI | ACTAGT | 1 cut(s) | 620 |
| BfaI | CTAG | 2 cut(s) | 146, 621 |
| BfoI | RGCGCY | 1 cut(s) | 705 |
| BisI | GCNGC | 5 cut(s) | 193, 408, 411, 678, 723 |
| BlsI | GCNGC | 5 cut(s) | 194, 409, 412, 679, 724 |
| Bme1390I | CCNGG | 3 cut(s) | 275, 366, 595 |
| Bme18I | GGWCC | 2 cut(s) | 545, 656 |
| BmgT120I | GGNCC | 3 cut(s) | 545, 656, 823 |
| BmiI | GGNNCC | 3 cut(s) | 546, 547, 657 |
| BmrFI | CCNGG | 3 cut(s) | 275, 366, 595 |
| BmsI | GCATC | 1 cut(s) | 703 |
| BpiI | GAAGAC | 1 cut(s) | 108 |
| Bpu10I | CCTNAGC | 2 cut(s) | 198, 717 |
| BpuEI | CTTGAG | 2 cut(s) | 81, 848 |
| BpuMI | CCSGG | 2 cut(s) | 275, 595 |
| BsaAI | YACGTR | 1 cut(s) | 731 |
| BsaBI | GATNNNNATC | 1 cut(s) | 63 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 116, 146, 326, 356 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 203, 594 |
| Bse1I | ACTGG | 2 cut(s) | 27, 190 |
| Bse3DI | GCAATG | 1 cut(s) | 902 |
| Bse8I | GATNNNNATC | 1 cut(s) | 63 |
| BseBI | CCWGG | 1 cut(s) | 366 |
| BseGI | GGATG | 5 cut(s) | 64, 211, 517, 718, 826 |
| BseJI | GATNNNNATC | 1 cut(s) | 63 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 203, 594 |
| BseMI | GCAATG | 1 cut(s) | 902 |
| BseMII | CTCAG | 2 cut(s) | 479, 731 |
| BseNI | ACTGG | 2 cut(s) | 27, 190 |
| BseRI | GAGGAG | 1 cut(s) | 580 |
| BseXI | GCAGC | 5 cut(s) | 179, 419, 422, 664, 709 |
| BshFI | GGCC | 3 cut(s) | 587, 784, 825 |
| BsiSI | CCGG | 3 cut(s) | 224, 274, 595 |
| BslFI | GGGAC | 1 cut(s) | 558 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 203, 594 |
| BsmFI | GGGAC | 1 cut(s) | 558 |
| BsnI | GGCC | 3 cut(s) | 587, 784, 825 |
| Bsp143I | GATC | 1 cut(s) | 469 |
| BspACI | CCGC | 4 cut(s) | 227, 332, 397, 415 |
| BspANI | GGCC | 3 cut(s) | 587, 784, 825 |
| BspCNI | CTCAG | 2 cut(s) | 480, 730 |
| BspLI | GGNNCC | 3 cut(s) | 546, 547, 657 |
| BspPI | GGATC | 1 cut(s) | 464 |
| BspQI | GCTCTTC | 1 cut(s) | 254 |
| BsrBI | CCGCTC | 2 cut(s) | 397, 417 |
| BsrDI | GCAATG | 1 cut(s) | 902 |
| BsrI | ACTGG | 2 cut(s) | 27, 190 |
| BssMI | GATC | 1 cut(s) | 469 |
| BssSI | CACGAG | 1 cut(s) | 268 |
| Bst2BI | CACGAG | 1 cut(s) | 268 |
| Bst2UI | CCWGG | 1 cut(s) | 366 |
| Bst4CI | ACNGT | 2 cut(s) | 19, 91 |
| Bst6I | CTCTTC | 3 cut(s) | 254, 480, 529 |
| BstBAI | YACGTR | 1 cut(s) | 731 |
| BstC8I | GCNNGC | 3 cut(s) | 245, 415, 782 |
| BstDEI | CTNAG | 3 cut(s) | 198, 488, 717 |
| BstEII | GGTNACC | 1 cut(s) | 399 |
| BstF5I | GGATG | 5 cut(s) | 64, 211, 517, 718, 826 |
| BstH2I | RGCGCY | 1 cut(s) | 705 |
| BstHHI | GCGC | 2 cut(s) | 371, 704 |
| BstKTI | GATC | 1 cut(s) | 472 |
| BstMBI | GATC | 1 cut(s) | 469 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 635, 701, 722 |
| BstNI | CCWGG | 1 cut(s) | 366 |
| BstPI | GGTNACC | 1 cut(s) | 399 |
| BstSCI | CCNGG | 3 cut(s) | 273, 364, 593 |
| BstV1I | GCAGC | 5 cut(s) | 179, 419, 422, 664, 709 |
| BstV2I | GAAGAC | 1 cut(s) | 108 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 560 |
| BsuRI | GGCC | 3 cut(s) | 587, 784, 825 |
| BtsCI | GGATG | 5 cut(s) | 64, 211, 517, 718, 826 |
| Cac8I | GCNNGC | 3 cut(s) | 245, 415, 782 |
| CfoI | GCGC | 2 cut(s) | 371, 704 |
| Cfr13I | GGNCC | 3 cut(s) | 545, 656, 823 |
| Csp6I | GTAC | 1 cut(s) | 20 |
| CviAII | CATG | 3 cut(s) | 328, 355, 427 |
| CviQI | GTAC | 1 cut(s) | 20 |
| DdeI | CTNAG | 3 cut(s) | 198, 488, 717 |
| DpnI | GATC | 1 cut(s) | 471 |
| DpnII | GATC | 1 cut(s) | 469 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 604 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 604 |
| Eam1104I | CTCTTC | 3 cut(s) | 254, 480, 529 |
| EarI | CTCTTC | 3 cut(s) | 254, 480, 529 |
| EciI | GGCGGA | 2 cut(s) | 242, 347 |
| Eco47I | GGWCC | 2 cut(s) | 545, 656 |
| Eco47III | AGCGCT | 1 cut(s) | 703 |
| Eco57I | CTGAAG | 1 cut(s) | 666 |
| Eco91I | GGTNACC | 1 cut(s) | 399 |
| EcoO109I | RGGNCCY | 2 cut(s) | 545, 656 |
| EcoO65I | GGTNACC | 1 cut(s) | 399 |
| EcoRII | CCWGG | 1 cut(s) | 364 |
| FaeI | CATG | 3 cut(s) | 331, 358, 430 |
| FaiI | YATR | 8 cut(s) | 40, 42, 135, 329, 356, 390, 428, 857 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 437, 469 |
| FaqI | GGGAC | 1 cut(s) | 558 |
| FatI | CATG | 3 cut(s) | 327, 354, 426 |
| FauI | CCCGC | 1 cut(s) | 422 |
| Fnu4HI | GCNGC | 5 cut(s) | 193, 408, 411, 678, 723 |
| FokI | GGATG | 5 cut(s) | 71, 198, 504, 725, 813 |
| Fsp4HI | GCNGC | 5 cut(s) | 193, 408, 411, 678, 723 |
| FspBI | CTAG | 2 cut(s) | 146, 621 |
| GlaI | GCGC | 2 cut(s) | 370, 703 |
| GluI | GCNGC | 5 cut(s) | 193, 408, 411, 678, 723 |
| HaeII | RGCGCY | 1 cut(s) | 705 |
| HaeIII | GGCC | 3 cut(s) | 587, 784, 825 |
| HapII | CCGG | 3 cut(s) | 224, 274, 595 |
| HhaI | GCGC | 2 cut(s) | 371, 704 |
| Hin1II | CATG | 3 cut(s) | 331, 358, 430 |
| Hin6I | GCGC | 2 cut(s) | 369, 702 |
| HinP1I | GCGC | 2 cut(s) | 369, 702 |
| HinfI | GANTC | 4 cut(s) | 94, 278, 374, 806 |
| HpaII | CCGG | 3 cut(s) | 224, 274, 595 |
| HphI | GGTGA | 2 cut(s) | 575, 815 |
| Hpy188I | TCNGA | 6 cut(s) | 47, 346, 466, 480, 489, 646 |
| Hpy188III | TCNNGA | 3 cut(s) | 56, 98, 268 |
| HpyAV | CCTTC | 4 cut(s) | 43, 264, 439, 728 |
| HpyCH4III | ACNGT | 2 cut(s) | 19, 91 |
| HpyCH4IV | ACGT | 1 cut(s) | 730 |
| HpyCH4V | TGCA | 3 cut(s) | 361, 570, 895 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 635, 701, 722 |
| HpyF3I | CTNAG | 3 cut(s) | 198, 488, 717 |
| HpySE526I | ACGT | 1 cut(s) | 730 |
| Hsp92II | CATG | 3 cut(s) | 331, 358, 430 |
| HspAI | GCGC | 2 cut(s) | 369, 702 |
| KflI | GGGWCCC | 1 cut(s) | 545 |
| Kzo9I | GATC | 1 cut(s) | 469 |
| LguI | GCTCTTC | 1 cut(s) | 254 |
| LmnI | GCTCC | 1 cut(s) | 334 |
| Lsp1109I | GCAGC | 5 cut(s) | 179, 419, 422, 664, 709 |
| LweI | GCATC | 1 cut(s) | 703 |
| MaeI | CTAG | 2 cut(s) | 146, 621 |
| MaeII | ACGT | 1 cut(s) | 730 |
| MaeIII | GTNAC | 2 cut(s) | 91, 399 |
| MalI | GATC | 1 cut(s) | 471 |
| MbiI | CCGCTC | 2 cut(s) | 397, 417 |
| MboI | GATC | 1 cut(s) | 469 |
| MboII | GAAGA | 5 cut(s) | 113, 241, 467, 516, 871 |
| MluCI | AATT | 5 cut(s) | 216, 291, 298, 347, 766 |
| MlyI | GAGTC | 1 cut(s) | 88 |
| MmeI | TCCRAC | 2 cut(s) | 103, 324 |
| MnlI | CCTC | 9 cut(s) | 112, 182, 296, 483, 483, 532, 560, 598, 601 |
| MseI | TTAA | 2 cut(s) | 63, 219 |
| MspI | CCGG | 3 cut(s) | 224, 274, 595 |
| MspR9I | CCNGG | 3 cut(s) | 275, 366, 595 |
| MvaI | CCWGG | 1 cut(s) | 366 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 635, 701, 722 |
| NciI | CCSGG | 2 cut(s) | 275, 595 |
| NdeII | GATC | 1 cut(s) | 469 |
| NlaIII | CATG | 3 cut(s) | 331, 358, 430 |
| NlaIV | GGNNCC | 3 cut(s) | 546, 547, 657 |
| NmuCI | GTSAC | 1 cut(s) | 91 |
| PciSI | GCTCTTC | 1 cut(s) | 254 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 440 |
| PfeI | GAWTC | 3 cut(s) | 278, 374, 806 |
| PfoI | TCCNGGA | 1 cut(s) | 593 |
| PkrI | GCNGC | 5 cut(s) | 194, 409, 412, 679, 724 |
| PleI | GAGTC | 1 cut(s) | 88 |
| PpsI | GAGTC | 1 cut(s) | 88 |
| Ppu21I | YACGTR | 1 cut(s) | 731 |
| PpuMI | RGGWCCY | 2 cut(s) | 545, 656 |
| PshBI | ATTAAT | 1 cut(s) | 219 |
| Psp5II | RGGWCCY | 2 cut(s) | 545, 656 |
| Psp6I | CCWGG | 1 cut(s) | 364 |
| PspEI | GGTNACC | 1 cut(s) | 399 |
| PspGI | CCWGG | 1 cut(s) | 364 |
| PspN4I | GGNNCC | 3 cut(s) | 546, 547, 657 |
| PspPI | GGNCC | 3 cut(s) | 545, 656, 823 |
| PspPPI | RGGWCCY | 2 cut(s) | 545, 656 |
| RsaI | GTAC | 1 cut(s) | 21 |
| RsaNI | GTAC | 1 cut(s) | 20 |
| SapI | GCTCTTC | 1 cut(s) | 254 |
| SaqAI | TTAA | 2 cut(s) | 63, 219 |
| SatI | GCNGC | 5 cut(s) | 193, 408, 411, 678, 723 |
| Sau3AI | GATC | 1 cut(s) | 469 |
| Sau96I | GGNCC | 3 cut(s) | 545, 656, 823 |
| SchI | GAGTC | 1 cut(s) | 88 |
| ScrFI | CCNGG | 3 cut(s) | 275, 366, 595 |
| SfaNI | GCATC | 1 cut(s) | 703 |
| SinI | GGWCC | 2 cut(s) | 545, 656 |
| SmlI | CTYRAG | 2 cut(s) | 96, 863 |
| SmoI | CTYRAG | 2 cut(s) | 96, 863 |
| SpeI | ACTAGT | 1 cut(s) | 620 |
| Sse9I | AATT | 5 cut(s) | 216, 291, 298, 347, 766 |
| SsiI | CCGC | 4 cut(s) | 227, 332, 397, 415 |
| SspMI | CTAG | 2 cut(s) | 146, 621 |
| StyD4I | CCNGG | 3 cut(s) | 273, 364, 593 |
| TaaI | ACNGT | 2 cut(s) | 19, 91 |
| TaiI | ACGT | 1 cut(s) | 733 |
| TasI | AATT | 5 cut(s) | 216, 291, 298, 347, 766 |
| TatI | WGTACW | 1 cut(s) | 19 |
| TfiI | GAWTC | 3 cut(s) | 278, 374, 806 |
| Tru1I | TTAA | 2 cut(s) | 63, 219 |
| Tru9I | TTAA | 2 cut(s) | 63, 219 |
| TseFI | GTSAC | 1 cut(s) | 91 |
| TseI | GCWGC | 5 cut(s) | 192, 407, 410, 677, 722 |
| Tsp45I | GTSAC | 1 cut(s) | 91 |
| TspDTI | ATGAA | 6 cut(s) | 150, 167, 316, 377, 443, 877 |
| TspGWI | ACGGA | 2 cut(s) | 97, 271 |
| VpaK11BI | GGWCC | 2 cut(s) | 545, 656 |
| VspI | ATTAAT | 1 cut(s) | 219 |
| XapI | RAATTY | 1 cut(s) | 766 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 817 |
| XspI | CTAG | 2 cut(s) | 146, 621 |