Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 23 - 69 | 1.3e-06 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 240 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 337 |
| Acc36I | ACCTGC | 1 cut(s) | 240 |
| AciI | CCGC | 1 cut(s) | 453 |
| AclWI | GGATC | 1 cut(s) | 535 |
| AcoI | YGGCCR | 2 cut(s) | 295, 423 |
| AcsI | RAATTY | 1 cut(s) | 202 |
| AfaI | GTAC | 2 cut(s) | 378, 448 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 365, 639, 644 |
| AgsI | TTSAA | 2 cut(s) | 292, 614 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 382, 414 |
| AluBI | AGCT | 4 cut(s) | 39, 229, 301, 740 |
| AluI | AGCT | 4 cut(s) | 39, 229, 301, 740 |
| Alw21I | GWGCWC | 1 cut(s) | 153 |
| Alw26I | GTCTC | 1 cut(s) | 108 |
| AlwI | GGATC | 1 cut(s) | 535 |
| Ama87I | CYCGRG | 2 cut(s) | 109, 682 |
| AoxI | GGCC | 2 cut(s) | 295, 423 |
| ApeKI | GCWGC | 2 cut(s) | 97, 301 |
| ApoI | RAATTY | 1 cut(s) | 202 |
| AspLEI | GCGC | 1 cut(s) | 358 |
| AspS9I | GGNCC | 2 cut(s) | 106, 782 |
| AsuHPI | GGTGA | 1 cut(s) | 35 |
| AvaI | CYCGRG | 2 cut(s) | 109, 682 |
| AvaII | GGWCC | 2 cut(s) | 106, 782 |
| BalI | TGGCCA | 2 cut(s) | 297, 425 |
| Bbv12I | GWGCWC | 1 cut(s) | 153 |
| BbvI | GCAGC | 2 cut(s) | 84, 288 |
| BccI | CCATC | 1 cut(s) | 794 |
| BclI | TGATCA | 2 cut(s) | 7, 187 |
| BcoDI | GTCTC | 1 cut(s) | 108 |
| BfaI | CTAG | 2 cut(s) | 477, 753 |
| BfoI | RGCGCY | 1 cut(s) | 359 |
| BfuAI | ACCTGC | 1 cut(s) | 240 |
| BisI | GCNGC | 2 cut(s) | 98, 302 |
| BlsI | GCNGC | 2 cut(s) | 99, 303 |
| Bme18I | GGWCC | 2 cut(s) | 106, 782 |
| BmeT110I | CYCGRG | 2 cut(s) | 109, 682 |
| BmgT120I | GGNCC | 2 cut(s) | 106, 782 |
| BmiI | GGNNCC | 5 cut(s) | 108, 405, 706, 783, 784 |
| BmsI | GCATC | 1 cut(s) | 491 |
| Bpu10I | CCTNAGC | 1 cut(s) | 381 |
| BsaJI | CCNNGG | 1 cut(s) | 638 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 227, 257, 619, 649 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 365, 639, 644 |
| Bse1I | ACTGG | 1 cut(s) | 108 |
| BseDI | CCNNGG | 1 cut(s) | 638 |
| BseGI | GGATG | 2 cut(s) | 506, 718 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 365, 639, 644 |
| BseMII | CTCAG | 1 cut(s) | 324 |
| BseNI | ACTGG | 1 cut(s) | 108 |
| BseXI | GCAGC | 2 cut(s) | 84, 288 |
| BshFI | GGCC | 2 cut(s) | 297, 425 |
| BsiHKAI | GWGCWC | 1 cut(s) | 153 |
| BsiHKCI | CYCGRG | 2 cut(s) | 109, 682 |
| BslFI | GGGAC | 2 cut(s) | 640, 795 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 365, 639, 644 |
| BsmAI | GTCTC | 1 cut(s) | 108 |
| BsmFI | GGGAC | 2 cut(s) | 640, 795 |
| BsnI | GGCC | 2 cut(s) | 297, 425 |
| BsoBI | CYCGRG | 2 cut(s) | 109, 682 |
| Bsp1286I | GDGCHC | 1 cut(s) | 153 |
| Bsp143I | GATC | 4 cut(s) | 7, 187, 311, 527 |
| BspACI | CCGC | 1 cut(s) | 453 |
| BspANI | GGCC | 2 cut(s) | 297, 425 |
| BspCNI | CTCAG | 1 cut(s) | 325 |
| BspLI | GGNNCC | 5 cut(s) | 108, 405, 706, 783, 784 |
| BspMI | ACCTGC | 1 cut(s) | 240 |
| BspPI | GGATC | 1 cut(s) | 535 |
| BsrI | ACTGG | 1 cut(s) | 108 |
| BssECI | CCNNGG | 1 cut(s) | 638 |
| BssMI | GATC | 4 cut(s) | 7, 187, 311, 527 |
| Bst4CI | ACNGT | 2 cut(s) | 123, 775 |
| BstC8I | GCNNGC | 2 cut(s) | 299, 354 |
| BstDEI | CTNAG | 3 cut(s) | 92, 333, 381 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 637 |
| BstF5I | GGATG | 2 cut(s) | 506, 718 |
| BstH2I | RGCGCY | 1 cut(s) | 359 |
| BstHHI | GCGC | 1 cut(s) | 358 |
| BstKTI | GATC | 4 cut(s) | 10, 190, 314, 530 |
| BstMAI | GTCTC | 1 cut(s) | 108 |
| BstMBI | GATC | 4 cut(s) | 7, 187, 311, 527 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 391 |
| BstV1I | GCAGC | 2 cut(s) | 84, 288 |
| BstX2I | RGATCY | 1 cut(s) | 527 |
| BstYI | RGATCY | 1 cut(s) | 527 |
| BsuRI | GGCC | 2 cut(s) | 297, 425 |
| BtgZI | GCGATG | 1 cut(s) | 772 |
| BtsCI | GGATG | 2 cut(s) | 506, 718 |
| BtsI | GCAGTG | 1 cut(s) | 379 |
| BtsIMutI | CAGTG | 2 cut(s) | 379, 780 |
| BveI | ACCTGC | 1 cut(s) | 240 |
| Cac8I | GCNNGC | 2 cut(s) | 299, 354 |
| CfoI | GCGC | 1 cut(s) | 358 |
| Cfr13I | GGNCC | 2 cut(s) | 106, 782 |
| CseI | GACGC | 1 cut(s) | 374 |
| Csp6I | GTAC | 2 cut(s) | 377, 447 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 493, 528, 759, 794 |
| CviAII | CATG | 3 cut(s) | 161, 191, 427 |
| CviQI | GTAC | 2 cut(s) | 377, 447 |
| DdeI | CTNAG | 3 cut(s) | 92, 333, 381 |
| DpnI | GATC | 4 cut(s) | 9, 189, 313, 529 |
| DpnII | GATC | 4 cut(s) | 7, 187, 311, 527 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 337 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 337 |
| EaeI | YGGCCR | 2 cut(s) | 295, 423 |
| Eco47I | GGWCC | 2 cut(s) | 106, 782 |
| Eco88I | CYCGRG | 2 cut(s) | 109, 682 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 637 |
| EcoO109I | RGGNCCY | 1 cut(s) | 782 |
| FaeI | CATG | 3 cut(s) | 164, 194, 430 |
| FaiI | YATR | 9 cut(s) | 147, 162, 192, 246, 282, 350, 428, 438, 539 |
| FaqI | GGGAC | 2 cut(s) | 640, 795 |
| FatI | CATG | 3 cut(s) | 160, 190, 426 |
| FbaI | TGATCA | 2 cut(s) | 7, 187 |
| Fnu4HI | GCNGC | 2 cut(s) | 98, 302 |
| FokI | GGATG | 2 cut(s) | 513, 705 |
| Fsp4HI | GCNGC | 2 cut(s) | 98, 302 |
| FspBI | CTAG | 2 cut(s) | 477, 753 |
| GlaI | GCGC | 1 cut(s) | 357 |
| GluI | GCNGC | 2 cut(s) | 98, 302 |
| HaeII | RGCGCY | 1 cut(s) | 359 |
| HaeIII | GGCC | 2 cut(s) | 297, 425 |
| HgaI | GACGC | 1 cut(s) | 374 |
| HhaI | GCGC | 1 cut(s) | 358 |
| Hin1II | CATG | 3 cut(s) | 164, 194, 430 |
| Hin6I | GCGC | 1 cut(s) | 356 |
| HinP1I | GCGC | 1 cut(s) | 356 |
| HindIII | AAGCTT | 2 cut(s) | 37, 227 |
| HinfI | GANTC | 1 cut(s) | 590 |
| HphI | GGTGA | 1 cut(s) | 35 |
| Hpy166II | GTNNAC | 3 cut(s) | 179, 277, 377 |
| Hpy188I | TCNGA | 5 cut(s) | 12, 73, 330, 639, 723 |
| Hpy188III | TCNNGA | 3 cut(s) | 208, 265, 531 |
| Hpy8I | GTNNAC | 3 cut(s) | 179, 277, 377 |
| Hpy99I | CGWCG | 1 cut(s) | 390 |
| HpyAV | CCTTC | 4 cut(s) | 384, 616, 642, 757 |
| HpyCH4III | ACNGT | 2 cut(s) | 123, 775 |
| HpyCH4V | TGCA | 5 cut(s) | 100, 304, 352, 504, 668 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 391 |
| HpyF3I | CTNAG | 3 cut(s) | 92, 333, 381 |
| Hsp92II | CATG | 3 cut(s) | 164, 194, 430 |
| HspAI | GCGC | 1 cut(s) | 356 |
| KflI | GGGWCCC | 1 cut(s) | 782 |
| Ksp22I | TGATCA | 2 cut(s) | 7, 187 |
| Kzo9I | GATC | 4 cut(s) | 7, 187, 311, 527 |
| LmnI | GCTCC | 2 cut(s) | 403, 683 |
| LpnPI | CCDG | 7 cut(s) | 89, 235, 311, 372, 509, 516, 806 |
| Lsp1109I | GCAGC | 2 cut(s) | 84, 288 |
| LweI | GCATC | 1 cut(s) | 491 |
| MaeI | CTAG | 2 cut(s) | 477, 753 |
| MalI | GATC | 4 cut(s) | 9, 189, 313, 529 |
| MboI | GATC | 4 cut(s) | 7, 187, 311, 527 |
| MboII | GAAGA | 6 cut(s) | 428, 568, 592, 736, 739, 742 |
| MflI | RGATCY | 1 cut(s) | 527 |
| MhlI | GDGCHC | 1 cut(s) | 153 |
| MlsI | TGGCCA | 2 cut(s) | 297, 425 |
| MluCI | AATT | 3 cut(s) | 202, 534, 614 |
| MluNI | TGGCCA | 2 cut(s) | 297, 425 |
| MlyI | GAGTC | 1 cut(s) | 599 |
| MmeI | TCCRAC | 1 cut(s) | 353 |
| MnlI | CCTC | 8 cut(s) | 19, 168, 214, 229, 417, 633, 643, 718 |
| Mox20I | TGGCCA | 2 cut(s) | 297, 425 |
| MscI | TGGCCA | 2 cut(s) | 297, 425 |
| MseI | TTAA | 2 cut(s) | 80, 617 |
| Msp20I | TGGCCA | 2 cut(s) | 297, 425 |
| MspA1I | CMGCKG | 1 cut(s) | 301 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 391 |
| NdeII | GATC | 4 cut(s) | 7, 187, 311, 527 |
| NlaIII | CATG | 3 cut(s) | 164, 194, 430 |
| NlaIV | GGNNCC | 5 cut(s) | 108, 405, 706, 783, 784 |
| PaqCI | CACCTGC | 1 cut(s) | 240 |
| PkrI | GCNGC | 2 cut(s) | 99, 303 |
| PleI | GAGTC | 1 cut(s) | 598 |
| PpsI | GAGTC | 1 cut(s) | 598 |
| PpuMI | RGGWCCY | 1 cut(s) | 782 |
| Psp5II | RGGWCCY | 1 cut(s) | 782 |
| PspN4I | GGNNCC | 5 cut(s) | 108, 405, 706, 783, 784 |
| PspPI | GGNCC | 2 cut(s) | 106, 782 |
| PspPPI | RGGWCCY | 1 cut(s) | 782 |
| PsuI | RGATCY | 1 cut(s) | 527 |
| PvuII | CAGCTG | 1 cut(s) | 301 |
| RsaI | GTAC | 2 cut(s) | 378, 448 |
| RsaNI | GTAC | 2 cut(s) | 377, 447 |
| SaqAI | TTAA | 2 cut(s) | 80, 617 |
| SatI | GCNGC | 2 cut(s) | 98, 302 |
| Sau3AI | GATC | 4 cut(s) | 7, 187, 311, 527 |
| Sau96I | GGNCC | 2 cut(s) | 106, 782 |
| SchI | GAGTC | 1 cut(s) | 599 |
| SduI | GDGCHC | 1 cut(s) | 153 |
| SfaNI | GCATC | 1 cut(s) | 491 |
| SinI | GGWCC | 2 cut(s) | 106, 782 |
| Sse9I | AATT | 3 cut(s) | 202, 534, 614 |
| SsiI | CCGC | 1 cut(s) | 453 |
| SspI | AATATT | 1 cut(s) | 610 |
| SspMI | CTAG | 2 cut(s) | 477, 753 |
| TaaI | ACNGT | 2 cut(s) | 123, 775 |
| TaqI | TCGA | 3 cut(s) | 64, 266, 388 |
| TasI | AATT | 3 cut(s) | 202, 534, 614 |
| Tru1I | TTAA | 2 cut(s) | 80, 617 |
| Tru9I | TTAA | 2 cut(s) | 80, 617 |
| TscAI | CASTG | 2 cut(s) | 379, 780 |
| TseI | GCWGC | 2 cut(s) | 97, 301 |
| TspDTI | ATGAA | 4 cut(s) | 453, 554, 685, 750 |
| TspGWI | ACGGA | 2 cut(s) | 248, 506 |
| TspRI | CASTG | 2 cut(s) | 379, 780 |
| VpaK11BI | GGWCC | 2 cut(s) | 106, 782 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 637 |
| XapI | RAATTY | 1 cut(s) | 202 |
| XspI | CTAG | 2 cut(s) | 477, 753 |