ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 56 |
| AccI | GTMKAC | 1 cut(s) | 372 |
| AciI | CCGC | 2 cut(s) | 92, 422 |
| AclWI | GGATC | 3 cut(s) | 234, 259, 272 |
| AcyI | GRCGYC | 1 cut(s) | 53 |
| AfeI | AGCGCT | 1 cut(s) | 45 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 274 |
| AgsI | TTSAA | 5 cut(s) | 40, 163, 184, 391, 475 |
| AjnI | CCWGG | 2 cut(s) | 66, 375 |
| AluBI | AGCT | 1 cut(s) | 142 |
| AluI | AGCT | 1 cut(s) | 142 |
| AlwI | GGATC | 3 cut(s) | 234, 259, 272 |
| Aor51HI | AGCGCT | 1 cut(s) | 45 |
| AspLEI | GCGC | 1 cut(s) | 46 |
| AsuC2I | CCSGG | 1 cut(s) | 269 |
| AsuHPI | GGTGA | 1 cut(s) | 310 |
| BaeGI | GKGCMC | 1 cut(s) | 383 |
| BamHI | GGATCC | 1 cut(s) | 264 |
| BccI | CCATC | 1 cut(s) | 209 |
| BciT130I | CCWGG | 2 cut(s) | 68, 377 |
| BciVI | GTATCC | 1 cut(s) | 403 |
| BcnI | CCSGG | 1 cut(s) | 269 |
| BfaI | CTAG | 2 cut(s) | 81, 101 |
| BfoI | RGCGCY | 1 cut(s) | 47 |
| BfuI | GTATCC | 1 cut(s) | 403 |
| Bme1390I | CCNGG | 3 cut(s) | 68, 269, 377 |
| BmiI | GGNNCC | 3 cut(s) | 240, 266, 465 |
| BmrFI | CCNGG | 3 cut(s) | 68, 269, 377 |
| BpuEI | CTTGAG | 1 cut(s) | 158 |
| BpuMI | CCSGG | 1 cut(s) | 269 |
| BsaAI | YACGTR | 1 cut(s) | 233 |
| BsaHI | GRCGYC | 1 cut(s) | 53 |
| BsaJI | CCNNGG | 3 cut(s) | 67, 173, 376 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 274 |
| Bse1I | ACTGG | 4 cut(s) | 210, 254, 313, 482 |
| BseBI | CCWGG | 2 cut(s) | 68, 377 |
| BseDI | CCNNGG | 3 cut(s) | 67, 173, 376 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 274 |
| BseNI | ACTGG | 4 cut(s) | 210, 254, 313, 482 |
| BseRI | GAGGAG | 1 cut(s) | 368 |
| BseSI | GKGCMC | 1 cut(s) | 383 |
| BsiSI | CCGG | 1 cut(s) | 268 |
| BslFI | GGGAC | 2 cut(s) | 46, 86 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 274 |
| BsmFI | GGGAC | 2 cut(s) | 46, 86 |
| BsmI | GAATGC | 1 cut(s) | 331 |
| Bsp1286I | GDGCHC | 1 cut(s) | 383 |
| Bsp143I | GATC | 3 cut(s) | 145, 226, 264 |
| BspACI | CCGC | 2 cut(s) | 92, 422 |
| BspLI | GGNNCC | 3 cut(s) | 240, 266, 465 |
| BspPI | GGATC | 3 cut(s) | 234, 259, 272 |
| BsrI | ACTGG | 4 cut(s) | 210, 254, 313, 482 |
| BssECI | CCNNGG | 3 cut(s) | 67, 173, 376 |
| BssMI | GATC | 3 cut(s) | 145, 226, 264 |
| BssNI | GRCGYC | 1 cut(s) | 53 |
| BssT1I | CCWWGG | 1 cut(s) | 173 |
| Bst2UI | CCWGG | 2 cut(s) | 68, 377 |
| Bst4CI | ACNGT | 1 cut(s) | 457 |
| BstACI | GRCGYC | 1 cut(s) | 53 |
| BstBAI | YACGTR | 1 cut(s) | 233 |
| BstH2I | RGCGCY | 1 cut(s) | 47 |
| BstHHI | GCGC | 1 cut(s) | 46 |
| BstKTI | GATC | 3 cut(s) | 148, 229, 267 |
| BstMBI | GATC | 3 cut(s) | 145, 226, 264 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 197, 206, 430 |
| BstNI | CCWGG | 2 cut(s) | 68, 377 |
| BstSCI | CCNGG | 3 cut(s) | 66, 267, 375 |
| BstSLI | GKGCMC | 1 cut(s) | 383 |
| BstSNI | TACGTA | 1 cut(s) | 233 |
| BstX2I | RGATCY | 2 cut(s) | 226, 264 |
| BstYI | RGATCY | 2 cut(s) | 226, 264 |
| BsuI | GTATCC | 1 cut(s) | 403 |
| BtsIMutI | CAGTG | 1 cut(s) | 217 |
| CfoI | GCGC | 1 cut(s) | 46 |
| CviAII | CATG | 3 cut(s) | 28, 295, 365 |
| CviJI | RGCY | 8 cut(s) | 23, 80, 98, 142, 171, 191, 209, 444 |
| CviKI_1 | RGCY | 8 cut(s) | 23, 80, 98, 142, 171, 191, 209, 444 |
| DpnI | GATC | 3 cut(s) | 147, 228, 266 |
| DpnII | GATC | 3 cut(s) | 145, 226, 264 |
| Eco105I | TACGTA | 1 cut(s) | 233 |
| Eco130I | CCWWGG | 1 cut(s) | 173 |
| Eco47III | AGCGCT | 1 cut(s) | 45 |
| EcoRII | CCWGG | 2 cut(s) | 66, 375 |
| EcoT14I | CCWWGG | 1 cut(s) | 173 |
| ErhI | CCWWGG | 1 cut(s) | 173 |
| FaeI | CATG | 3 cut(s) | 31, 298, 368 |
| FaiI | YATR | 6 cut(s) | 29, 296, 342, 350, 366, 437 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 451, 483 |
| FaqI | GGGAC | 2 cut(s) | 46, 86 |
| FatI | CATG | 3 cut(s) | 27, 294, 364 |
| FblI | GTMKAC | 1 cut(s) | 372 |
| FspBI | CTAG | 2 cut(s) | 81, 101 |
| GlaI | GCGC | 1 cut(s) | 45 |
| HaeII | RGCGCY | 1 cut(s) | 47 |
| HapII | CCGG | 1 cut(s) | 268 |
| HhaI | GCGC | 1 cut(s) | 46 |
| Hin1I | GRCGYC | 1 cut(s) | 53 |
| Hin1II | CATG | 3 cut(s) | 31, 298, 368 |
| Hin6I | GCGC | 1 cut(s) | 44 |
| HinP1I | GCGC | 1 cut(s) | 44 |
| HincII | GTYRAC | 1 cut(s) | 373 |
| HindII | GTYRAC | 1 cut(s) | 373 |
| HinfI | GANTC | 2 cut(s) | 280, 356 |
| HpaII | CCGG | 1 cut(s) | 268 |
| HphI | GGTGA | 1 cut(s) | 310 |
| Hpy166II | GTNNAC | 1 cut(s) | 373 |
| Hpy188I | TCNGA | 3 cut(s) | 150, 246, 488 |
| Hpy188III | TCNNGA | 1 cut(s) | 101 |
| Hpy8I | GTNNAC | 1 cut(s) | 373 |
| Hpy99I | CGWCG | 1 cut(s) | 58 |
| HpyAV | CCTTC | 1 cut(s) | 477 |
| HpyCH4III | ACNGT | 1 cut(s) | 457 |
| HpyCH4IV | ACGT | 3 cut(s) | 35, 53, 232 |
| HpyCH4V | TGCA | 1 cut(s) | 433 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 197, 206, 430 |
| HpySE526I | ACGT | 3 cut(s) | 35, 53, 232 |
| Hsp92I | GRCGYC | 1 cut(s) | 53 |
| Hsp92II | CATG | 3 cut(s) | 31, 298, 368 |
| HspAI | GCGC | 1 cut(s) | 44 |
| Kzo9I | GATC | 3 cut(s) | 145, 226, 264 |
| LpnPI | CCDG | 9 cut(s) | 53, 80, 223, 235, 281, 294, 362, 389, 463 |
| MaeI | CTAG | 2 cut(s) | 81, 101 |
| MaeII | ACGT | 3 cut(s) | 35, 53, 232 |
| MaeIII | GTNAC | 1 cut(s) | 451 |
| MalI | GATC | 3 cut(s) | 147, 228, 266 |
| MboI | GATC | 3 cut(s) | 145, 226, 264 |
| MboII | GAAGA | 2 cut(s) | 70, 403 |
| MflI | RGATCY | 2 cut(s) | 226, 264 |
| MhlI | GDGCHC | 1 cut(s) | 383 |
| MluCI | AATT | 2 cut(s) | 312, 318 |
| MlyI | GAGTC | 1 cut(s) | 365 |
| MnlI | CCTC | 5 cut(s) | 13, 97, 217, 252, 346 |
| MspA1I | CMGCKG | 1 cut(s) | 92 |
| MspI | CCGG | 1 cut(s) | 268 |
| MspR9I | CCNGG | 3 cut(s) | 68, 269, 377 |
| Mva1269I | GAATGC | 1 cut(s) | 331 |
| MvaI | CCWGG | 2 cut(s) | 68, 377 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 197, 206, 430 |
| NciI | CCSGG | 1 cut(s) | 269 |
| NdeII | GATC | 3 cut(s) | 145, 226, 264 |
| NlaIII | CATG | 3 cut(s) | 31, 298, 368 |
| NlaIV | GGNNCC | 3 cut(s) | 240, 266, 465 |
| NmuCI | GTSAC | 1 cut(s) | 451 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 343 |
| PctI | GAATGC | 1 cut(s) | 331 |
| PfeI | GAWTC | 1 cut(s) | 280 |
| PleI | GAGTC | 1 cut(s) | 364 |
| PpsI | GAGTC | 1 cut(s) | 364 |
| Ppu21I | YACGTR | 1 cut(s) | 233 |
| Psp6I | CCWGG | 2 cut(s) | 66, 375 |
| PspGI | CCWGG | 2 cut(s) | 66, 375 |
| PspN4I | GGNNCC | 3 cut(s) | 240, 266, 465 |
| PsuI | RGATCY | 2 cut(s) | 226, 264 |
| SalI | GTCGAC | 1 cut(s) | 371 |
| Sau3AI | GATC | 3 cut(s) | 145, 226, 264 |
| SchI | GAGTC | 1 cut(s) | 365 |
| ScrFI | CCNGG | 3 cut(s) | 68, 269, 377 |
| SduI | GDGCHC | 1 cut(s) | 383 |
| SetI | ASST | 6 cut(s) | 38, 56, 144, 235, 289, 378 |
| SmlI | CTYRAG | 1 cut(s) | 137 |
| SmoI | CTYRAG | 1 cut(s) | 137 |
| SnaBI | TACGTA | 1 cut(s) | 233 |
| Sse9I | AATT | 2 cut(s) | 312, 318 |
| SsiI | CCGC | 2 cut(s) | 92, 422 |
| SspMI | CTAG | 2 cut(s) | 81, 101 |
| StyD4I | CCNGG | 3 cut(s) | 66, 267, 375 |
| StyI | CCWWGG | 1 cut(s) | 173 |
| TaaI | ACNGT | 1 cut(s) | 457 |
| TaiI | ACGT | 3 cut(s) | 38, 56, 235 |
| TaqI | TCGA | 3 cut(s) | 56, 359, 372 |
| TasI | AATT | 2 cut(s) | 312, 318 |
| TfiI | GAWTC | 1 cut(s) | 280 |
| TscAI | CASTG | 1 cut(s) | 217 |
| TseFI | GTSAC | 1 cut(s) | 451 |
| Tsp45I | GTSAC | 1 cut(s) | 451 |
| TspDTI | ATGAA | 2 cut(s) | 17, 283 |
| TspRI | CASTG | 1 cut(s) | 217 |
| XbaI | TCTAGA | 1 cut(s) | 100 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 217 |
| XmiI | GTMKAC | 1 cut(s) | 372 |
| XspI | CTAG | 2 cut(s) | 81, 101 |
| ZraI | GACGTC | 1 cut(s) | 54 |