ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 119 - 166 | 7.8e-10 | Zinc knuckle |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 859 |
| Acc36I | ACCTGC | 1 cut(s) | 859 |
| Acc65I | GGTACC | 1 cut(s) | 1168 |
| AccB1I | GGYRCC | 1 cut(s) | 1168 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 421 |
| AccBSI | CCGCTC | 1 cut(s) | 1522 |
| AccII | CGCG | 1 cut(s) | 129 |
| AciI | CCGC | 9 cut(s) | 91, 129, 263, 272, 738, 1070, 1397, 1522, 1616 |
| AclWI | GGATC | 5 cut(s) | 781, 803, 816, 1256, 1269 |
| AcsI | RAATTY | 2 cut(s) | 1359, 1543 |
| AcuI | CTGAAG | 2 cut(s) | 921, 1236 |
| AcyI | GRCGYC | 1 cut(s) | 580 |
| AfaI | GTAC | 5 cut(s) | 286, 385, 694, 977, 1170 |
| AfeI | AGCGCT | 3 cut(s) | 98, 372, 731 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 407, 421, 487, 599, 904, 1031, 1219 |
| AflIII | ACRYGT | 1 cut(s) | 1155 |
| AgsI | TTSAA | 6 cut(s) | 205, 431, 791, 1202, 1559, 1628 |
| AjnI | CCWGG | 3 cut(s) | 414, 456, 1330 |
| AluBI | AGCT | 5 cut(s) | 197, 764, 1002, 1084, 1103 |
| AluI | AGCT | 5 cut(s) | 197, 764, 1002, 1084, 1103 |
| Alw21I | GWGCWC | 1 cut(s) | 1432 |
| Alw26I | GTCTC | 1 cut(s) | 144 |
| AlwI | GGATC | 5 cut(s) | 781, 803, 816, 1256, 1269 |
| Aor51HI | AGCGCT | 3 cut(s) | 98, 372, 731 |
| AoxI | GGCC | 4 cut(s) | 214, 536, 590, 816 |
| ApeKI | GCWGC | 3 cut(s) | 99, 260, 865 |
| ApoI | RAATTY | 2 cut(s) | 1359, 1543 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 123 |
| Asp718I | GGTACC | 1 cut(s) | 1168 |
| AspA2I | CCTAGG | 1 cut(s) | 593 |
| AspLEI | GCGC | 3 cut(s) | 99, 373, 732 |
| AspS9I | GGNCC | 3 cut(s) | 214, 590, 1328 |
| AsuC2I | CCSGG | 3 cut(s) | 218, 402, 1173 |
| AsuHPI | GGTGA | 5 cut(s) | 143, 361, 470, 1204, 1514 |
| AvaII | GGWCC | 1 cut(s) | 1328 |
| AvrII | CCTAGG | 1 cut(s) | 593 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 276, 309 |
| BamHI | GGATCC | 2 cut(s) | 808, 1261 |
| BanI | GGYRCC | 1 cut(s) | 1168 |
| BanII | GRGCYC | 1 cut(s) | 223 |
| BbsI | GAAGAC | 1 cut(s) | 1011 |
| Bbv12I | GWGCWC | 1 cut(s) | 1432 |
| BbvI | GCAGC | 3 cut(s) | 86, 272, 877 |
| BccI | CCATC | 8 cut(s) | 10, 176, 349, 466, 632, 763, 1220, 1591 |
| BciT130I | CCWGG | 3 cut(s) | 416, 458, 1332 |
| BcnI | CCSGG | 3 cut(s) | 218, 402, 1173 |
| BcoDI | GTCTC | 1 cut(s) | 144 |
| BfaI | CTAG | 7 cut(s) | 194, 368, 486, 594, 1026, 1145, 1314 |
| BfoI | RGCGCY | 3 cut(s) | 100, 374, 733 |
| BfuAI | ACCTGC | 1 cut(s) | 859 |
| BglII | AGATCT | 1 cut(s) | 568 |
| BisI | GCNGC | 5 cut(s) | 100, 261, 738, 866, 1071 |
| BlnI | CCTAGG | 1 cut(s) | 593 |
| BlsI | GCNGC | 5 cut(s) | 101, 262, 739, 867, 1072 |
| Bme1390I | CCNGG | 6 cut(s) | 218, 402, 416, 458, 1173, 1332 |
| Bme18I | GGWCC | 1 cut(s) | 1328 |
| BmgT120I | GGNCC | 3 cut(s) | 214, 590, 1328 |
| BmiI | GGNNCC | 6 cut(s) | 591, 810, 1170, 1263, 1329, 1638 |
| BmrFI | CCNGG | 6 cut(s) | 218, 402, 416, 458, 1173, 1332 |
| BmrI | ACTGGG | 3 cut(s) | 851, 867, 1392 |
| BmsI | GCATC | 2 cut(s) | 519, 1378 |
| BmuI | ACTGGG | 3 cut(s) | 851, 867, 1392 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1491, 1611 |
| BpiI | GAAGAC | 1 cut(s) | 1011 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 634, 666 |
| BpuMI | CCSGG | 3 cut(s) | 218, 402, 1173 |
| BsaHI | GRCGYC | 1 cut(s) | 580 |
| BsaJI | CCNNGG | 5 cut(s) | 233, 593, 819, 1172, 1331 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 676, 706, 1142, 1172 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 407, 421, 487, 599, 904, 1031, 1219 |
| Bse1I | ACTGG | 5 cut(s) | 846, 862, 1265, 1387, 1471 |
| BseBI | CCWGG | 3 cut(s) | 416, 458, 1332 |
| BseDI | CCNNGG | 5 cut(s) | 233, 593, 819, 1172, 1331 |
| BseGI | GGATG | 7 cut(s) | 21, 187, 301, 360, 364, 1231, 1393 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 407, 421, 487, 599, 904, 1031, 1219 |
| BseMII | CTCAG | 6 cut(s) | 543, 657, 665, 719, 756, 816 |
| BseNI | ACTGG | 5 cut(s) | 846, 862, 1265, 1387, 1471 |
| BseRI | GAGGAG | 5 cut(s) | 683, 697, 740, 920, 1163 |
| BseXI | GCAGC | 3 cut(s) | 86, 272, 877 |
| BsgI | GTGCAG | 1 cut(s) | 85 |
| Bsh1236I | CGCG | 1 cut(s) | 129 |
| BshFI | GGCC | 4 cut(s) | 216, 538, 592, 818 |
| BshNI | GGYRCC | 1 cut(s) | 1168 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1432 |
| BsiSI | CCGG | 3 cut(s) | 217, 401, 1172 |
| BsiWI | CGTACG | 1 cut(s) | 383 |
| BslFI | GGGAC | 6 cut(s) | 539, 881, 1189, 1196, 1361, 1499 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 407, 421, 487, 599, 904, 1031, 1219 |
| BsmAI | GTCTC | 1 cut(s) | 144 |
| BsmFI | GGGAC | 6 cut(s) | 539, 881, 1189, 1196, 1361, 1499 |
| BsnI | GGCC | 4 cut(s) | 216, 538, 592, 818 |
| Bsp1286I | GDGCHC | 2 cut(s) | 223, 1432 |
| Bsp143I | GATC | 7 cut(s) | 279, 568, 773, 808, 923, 1261, 1528 |
| BspACI | CCGC | 9 cut(s) | 91, 129, 263, 272, 738, 1070, 1397, 1522, 1616 |
| BspANI | GGCC | 4 cut(s) | 216, 538, 592, 818 |
| BspCNI | CTCAG | 6 cut(s) | 542, 658, 664, 718, 757, 815 |
| BspFNI | CGCG | 1 cut(s) | 129 |
| BspHI | TCATGA | 1 cut(s) | 1372 |
| BspLI | GGNNCC | 6 cut(s) | 591, 810, 1170, 1263, 1329, 1638 |
| BspMI | ACCTGC | 1 cut(s) | 859 |
| BspPI | GGATC | 5 cut(s) | 781, 803, 816, 1256, 1269 |
| BspT107I | GGYRCC | 1 cut(s) | 1168 |
| BsrBI | CCGCTC | 1 cut(s) | 1522 |
| BsrI | ACTGG | 5 cut(s) | 846, 862, 1265, 1387, 1471 |
| BssECI | CCNNGG | 5 cut(s) | 233, 593, 819, 1172, 1331 |
| BssMI | GATC | 7 cut(s) | 279, 568, 773, 808, 923, 1261, 1528 |
| BssNI | GRCGYC | 1 cut(s) | 580 |
| BssT1I | CCWWGG | 3 cut(s) | 233, 593, 819 |
| Bst2UI | CCWGG | 3 cut(s) | 416, 458, 1332 |
| Bst4CI | ACNGT | 5 cut(s) | 106, 388, 697, 1352, 1493 |
| Bst6I | CTCTTC | 2 cut(s) | 897, 1130 |
| BstACI | GRCGYC | 1 cut(s) | 580 |
| BstC8I | GCNNGC | 1 cut(s) | 950 |
| BstDEI | CTNAG | 7 cut(s) | 529, 554, 651, 666, 705, 765, 802 |
| BstEII | GGTNACC | 2 cut(s) | 441, 476 |
| BstF5I | GGATG | 7 cut(s) | 21, 187, 301, 360, 364, 1231, 1393 |
| BstFNI | CGCG | 1 cut(s) | 129 |
| BstH2I | RGCGCY | 3 cut(s) | 100, 374, 733 |
| BstHHI | GCGC | 3 cut(s) | 99, 373, 732 |
| BstKTI | GATC | 7 cut(s) | 282, 571, 776, 811, 926, 1264, 1531 |
| BstMAI | GTCTC | 1 cut(s) | 144 |
| BstMBI | GATC | 7 cut(s) | 279, 568, 773, 808, 923, 1261, 1528 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 108, 269, 715, 945 |
| BstNI | CCWGG | 3 cut(s) | 416, 458, 1332 |
| BstNSI | RCATGY | 2 cut(s) | 952, 1159 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1491, 1611 |
| BstPI | GGTNACC | 2 cut(s) | 441, 476 |
| BstSCI | CCNGG | 6 cut(s) | 216, 400, 414, 456, 1171, 1330 |
| BstUI | CGCG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 3 cut(s) | 86, 272, 877 |
| BstV2I | GAAGAC | 1 cut(s) | 1011 |
| BstX2I | RGATCY | 4 cut(s) | 568, 773, 808, 1261 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 464 |
| BstYI | RGATCY | 4 cut(s) | 568, 773, 808, 1261 |
| BsuRI | GGCC | 4 cut(s) | 216, 538, 592, 818 |
| BtgZI | GCGATG | 1 cut(s) | 651 |
| BtsCI | GGATG | 7 cut(s) | 21, 187, 301, 360, 364, 1231, 1393 |
| BtsIMutI | CAGTG | 2 cut(s) | 1272, 1464 |
| BveI | ACCTGC | 1 cut(s) | 859 |
| Cac8I | GCNNGC | 1 cut(s) | 950 |
| CciI | TCATGA | 1 cut(s) | 1372 |
| CfoI | GCGC | 3 cut(s) | 99, 373, 732 |
| Cfr13I | GGNCC | 3 cut(s) | 214, 590, 1328 |
| CseI | GACGC | 4 cut(s) | 20, 569, 1204, 1514 |
| CsiI | ACCWGGT | 1 cut(s) | 414 |
| Csp6I | GTAC | 5 cut(s) | 285, 384, 693, 976, 1169 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 801, 836 |
| CviAII | CATG | 7 cut(s) | 224, 325, 883, 949, 1156, 1290, 1373 |
| CviQI | GTAC | 5 cut(s) | 285, 384, 693, 976, 1169 |
| DdeI | CTNAG | 7 cut(s) | 529, 554, 651, 666, 705, 765, 802 |
| DpnI | GATC | 7 cut(s) | 281, 570, 775, 810, 925, 1263, 1530 |
| DpnII | GATC | 7 cut(s) | 279, 568, 773, 808, 923, 1261, 1528 |
| DraI | TTTAAA | 3 cut(s) | 756, 850, 934 |
| Eam1104I | CTCTTC | 2 cut(s) | 897, 1130 |
| EarI | CTCTTC | 2 cut(s) | 897, 1130 |
| EciI | GGCGGA | 1 cut(s) | 106 |
| Eco130I | CCWWGG | 3 cut(s) | 233, 593, 819 |
| Eco147I | AGGCCT | 2 cut(s) | 538, 818 |
| Eco24I | GRGCYC | 1 cut(s) | 223 |
| Eco47I | GGWCC | 1 cut(s) | 1328 |
| Eco47III | AGCGCT | 3 cut(s) | 98, 372, 731 |
| Eco57I | CTGAAG | 2 cut(s) | 921, 1236 |
| Eco91I | GGTNACC | 2 cut(s) | 441, 476 |
| EcoO109I | RGGNCCY | 2 cut(s) | 590, 1328 |
| EcoO65I | GGTNACC | 2 cut(s) | 441, 476 |
| EcoRII | CCWGG | 3 cut(s) | 414, 456, 1330 |
| EcoT14I | CCWWGG | 3 cut(s) | 233, 593, 819 |
| EcoT38I | GRGCYC | 1 cut(s) | 223 |
| ErhI | CCWWGG | 3 cut(s) | 233, 593, 819 |
| FaeI | CATG | 7 cut(s) | 227, 328, 886, 952, 1159, 1293, 1376 |
| FaqI | GGGAC | 6 cut(s) | 539, 881, 1189, 1196, 1361, 1499 |
| FatI | CATG | 7 cut(s) | 223, 324, 882, 948, 1155, 1289, 1372 |
| FauI | CCCGC | 1 cut(s) | 265 |
| FauNDI | CATATG | 1 cut(s) | 289 |
| Fnu4HI | GCNGC | 5 cut(s) | 100, 261, 738, 866, 1071 |
| FokI | GGATG | 7 cut(s) | 28, 194, 308, 367, 371, 1238, 1400 |
| FriOI | GRGCYC | 1 cut(s) | 223 |
| Fsp4HI | GCNGC | 5 cut(s) | 100, 261, 738, 866, 1071 |
| FspBI | CTAG | 7 cut(s) | 194, 368, 486, 594, 1026, 1145, 1314 |
| GlaI | GCGC | 3 cut(s) | 98, 372, 731 |
| GluI | GCNGC | 5 cut(s) | 100, 261, 738, 866, 1071 |
| HaeII | RGCGCY | 3 cut(s) | 100, 374, 733 |
| HaeIII | GGCC | 4 cut(s) | 216, 538, 592, 818 |
| HapII | CCGG | 3 cut(s) | 217, 401, 1172 |
| HgaI | GACGC | 4 cut(s) | 20, 569, 1204, 1514 |
| HhaI | GCGC | 3 cut(s) | 99, 373, 732 |
| Hin1I | GRCGYC | 1 cut(s) | 580 |
| Hin1II | CATG | 7 cut(s) | 227, 328, 886, 952, 1159, 1293, 1376 |
| Hin6I | GCGC | 3 cut(s) | 97, 371, 730 |
| HinP1I | GCGC | 3 cut(s) | 97, 371, 730 |
| HincII | GTYRAC | 1 cut(s) | 1092 |
| HindII | GTYRAC | 1 cut(s) | 1092 |
| HindIII | AAGCTT | 1 cut(s) | 1082 |
| HinfI | GANTC | 4 cut(s) | 68, 527, 647, 1202 |
| HpaII | CCGG | 3 cut(s) | 217, 401, 1172 |
| HphI | GGTGA | 5 cut(s) | 143, 361, 470, 1204, 1514 |
| Hpy166II | GTNNAC | 3 cut(s) | 799, 1092, 1479 |
| Hpy188I | TCNGA | 8 cut(s) | 471, 532, 546, 667, 805, 1278, 1320, 1606 |
| Hpy188III | TCNNGA | 3 cut(s) | 1373, 1496, 1594 |
| Hpy8I | GTNNAC | 3 cut(s) | 799, 1092, 1479 |
| Hpy99I | CGWCG | 2 cut(s) | 36, 585 |
| HpyAV | CCTTC | 5 cut(s) | 785, 1117, 1121, 1183, 1493 |
| HpyCH4III | ACNGT | 5 cut(s) | 106, 388, 697, 1352, 1493 |
| HpyCH4V | TGCA | 5 cut(s) | 102, 718, 952, 1010, 1436 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 108, 269, 715, 945 |
| HpyF3I | CTNAG | 7 cut(s) | 529, 554, 651, 666, 705, 765, 802 |
| Hsp92I | GRCGYC | 1 cut(s) | 580 |
| Hsp92II | CATG | 7 cut(s) | 227, 328, 886, 952, 1159, 1293, 1376 |
| HspAI | GCGC | 3 cut(s) | 97, 371, 730 |
| KpnI | GGTACC | 1 cut(s) | 1172 |
| Kzo9I | GATC | 7 cut(s) | 279, 568, 773, 808, 923, 1261, 1528 |
| LmnI | GCTCC | 2 cut(s) | 727, 1642 |
| Lsp1109I | GCAGC | 3 cut(s) | 86, 272, 877 |
| LweI | GCATC | 2 cut(s) | 519, 1378 |
| MabI | ACCWGGT | 1 cut(s) | 414 |
| MaeI | CTAG | 7 cut(s) | 194, 368, 486, 594, 1026, 1145, 1314 |
| MalI | GATC | 7 cut(s) | 281, 570, 775, 810, 925, 1263, 1530 |
| MbiI | CCGCTC | 1 cut(s) | 1522 |
| MboI | GATC | 7 cut(s) | 279, 568, 773, 808, 923, 1261, 1528 |
| MboII | GAAGA | 4 cut(s) | 914, 1011, 1048, 1147 |
| MfeI | CAATTG | 1 cut(s) | 1307 |
| MflI | RGATCY | 4 cut(s) | 568, 773, 808, 1261 |
| MhlI | GDGCHC | 2 cut(s) | 223, 1432 |
| MluCI | AATT | 7 cut(s) | 394, 1040, 1307, 1359, 1417, 1543, 1554 |
| MlyI | GAGTC | 2 cut(s) | 77, 521 |
| MmeI | TCCRAC | 3 cut(s) | 659, 814, 867 |
| MroXI | GAANNNNTTC | 1 cut(s) | 123 |
| MseI | TTAA | 6 cut(s) | 755, 849, 920, 933, 1515, 1553 |
| MspA1I | CMGCKG | 1 cut(s) | 263 |
| MspI | CCGG | 3 cut(s) | 217, 401, 1172 |
| MspR9I | CCNGG | 6 cut(s) | 218, 402, 416, 458, 1173, 1332 |
| MunI | CAATTG | 1 cut(s) | 1307 |
| MvaI | CCWGG | 3 cut(s) | 416, 458, 1332 |
| MvnI | CGCG | 1 cut(s) | 129 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 108, 269, 715, 945 |
| NciI | CCSGG | 3 cut(s) | 218, 402, 1173 |
| NdeI | CATATG | 1 cut(s) | 289 |
| NdeII | GATC | 7 cut(s) | 279, 568, 773, 808, 923, 1261, 1528 |
| NlaIII | CATG | 7 cut(s) | 227, 328, 886, 952, 1159, 1293, 1376 |
| NlaIV | GGNNCC | 6 cut(s) | 591, 810, 1170, 1263, 1329, 1638 |
| NmuCI | GTSAC | 7 cut(s) | 363, 476, 654, 1192, 1243, 1502, 1591 |
| NspI | RCATGY | 2 cut(s) | 952, 1159 |
| PaeI | GCATGC | 1 cut(s) | 952 |
| PagI | TCATGA | 1 cut(s) | 1372 |
| PaqCI | CACCTGC | 1 cut(s) | 859 |
| PceI | AGGCCT | 2 cut(s) | 538, 818 |
| PciI | ACATGT | 1 cut(s) | 1155 |
| PdmI | GAANNNNTTC | 1 cut(s) | 123 |
| PfeI | GAWTC | 2 cut(s) | 647, 1202 |
| Pfl23II | CGTACG | 1 cut(s) | 383 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 421 |
| PfoI | TCCNGGA | 1 cut(s) | 400 |
| PkrI | GCNGC | 5 cut(s) | 101, 262, 739, 867, 1072 |
| PleI | GAGTC | 2 cut(s) | 76, 521 |
| PpsI | GAGTC | 2 cut(s) | 76, 521 |
| PpuMI | RGGWCCY | 1 cut(s) | 1328 |
| PscI | ACATGT | 1 cut(s) | 1155 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1491, 1611 |
| Psp5II | RGGWCCY | 1 cut(s) | 1328 |
| Psp6I | CCWGG | 3 cut(s) | 414, 456, 1330 |
| PspEI | GGTNACC | 2 cut(s) | 441, 476 |
| PspGI | CCWGG | 3 cut(s) | 414, 456, 1330 |
| PspLI | CGTACG | 1 cut(s) | 383 |
| PspN4I | GGNNCC | 6 cut(s) | 591, 810, 1170, 1263, 1329, 1638 |
| PspPI | GGNCC | 3 cut(s) | 214, 590, 1328 |
| PspPPI | RGGWCCY | 1 cut(s) | 1328 |
| PsuI | RGATCY | 4 cut(s) | 568, 773, 808, 1261 |
| RsaI | GTAC | 5 cut(s) | 286, 385, 694, 977, 1170 |
| RsaNI | GTAC | 5 cut(s) | 285, 384, 693, 976, 1169 |
| SaqAI | TTAA | 6 cut(s) | 755, 849, 920, 933, 1515, 1553 |
| SatI | GCNGC | 5 cut(s) | 100, 261, 738, 866, 1071 |
| Sau3AI | GATC | 7 cut(s) | 279, 568, 773, 808, 923, 1261, 1528 |
| Sau96I | GGNCC | 3 cut(s) | 214, 590, 1328 |
| SchI | GAGTC | 2 cut(s) | 77, 521 |
| ScrFI | CCNGG | 6 cut(s) | 218, 402, 416, 458, 1173, 1332 |
| SduI | GDGCHC | 2 cut(s) | 223, 1432 |
| SexAI | ACCWGGT | 1 cut(s) | 414 |
| SfaNI | GCATC | 2 cut(s) | 519, 1378 |
| SinI | GGWCC | 1 cut(s) | 1328 |
| SphI | GCATGC | 1 cut(s) | 952 |
| Sse9I | AATT | 7 cut(s) | 394, 1040, 1307, 1359, 1417, 1543, 1554 |
| SseBI | AGGCCT | 2 cut(s) | 538, 818 |
| SsiI | CCGC | 9 cut(s) | 91, 129, 263, 272, 738, 1070, 1397, 1522, 1616 |
| SspMI | CTAG | 7 cut(s) | 194, 368, 486, 594, 1026, 1145, 1314 |
| StuI | AGGCCT | 2 cut(s) | 538, 818 |
| StyD4I | CCNGG | 6 cut(s) | 216, 400, 414, 456, 1171, 1330 |
| StyI | CCWWGG | 3 cut(s) | 233, 593, 819 |
| TaaI | ACNGT | 5 cut(s) | 106, 388, 697, 1352, 1493 |
| TaqI | TCGA | 1 cut(s) | 71 |
| TasI | AATT | 7 cut(s) | 394, 1040, 1307, 1359, 1417, 1543, 1554 |
| TauI | GCSGC | 2 cut(s) | 740, 1073 |
| TfiI | GAWTC | 2 cut(s) | 647, 1202 |
| Tru1I | TTAA | 6 cut(s) | 755, 849, 920, 933, 1515, 1553 |
| Tru9I | TTAA | 6 cut(s) | 755, 849, 920, 933, 1515, 1553 |
| TscAI | CASTG | 2 cut(s) | 1272, 1471 |
| TseFI | GTSAC | 7 cut(s) | 363, 476, 654, 1192, 1243, 1502, 1591 |
| TseI | GCWGC | 3 cut(s) | 99, 260, 865 |
| Tsp45I | GTSAC | 7 cut(s) | 363, 476, 654, 1192, 1243, 1502, 1591 |
| TspDTI | ATGAA | 5 cut(s) | 324, 368, 1361, 1371, 1389 |
| TspGWI | ACGGA | 1 cut(s) | 1412 |
| TspRI | CASTG | 2 cut(s) | 1272, 1471 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 421 |
| VpaK11BI | GGWCC | 1 cut(s) | 1328 |
| XapI | RAATTY | 2 cut(s) | 1359, 1543 |
| XceI | RCATGY | 2 cut(s) | 952, 1159 |
| XmaJI | CCTAGG | 1 cut(s) | 593 |
| XmnI | GAANNNNTTC | 1 cut(s) | 123 |
| XspI | CTAG | 7 cut(s) | 194, 368, 486, 594, 1026, 1145, 1314 |