Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 919 |
| AccBSI | CCGCTC | 1 cut(s) | 1174 |
| AcsI | RAATTY | 3 cut(s) | 397, 628, 867 |
| AcuI | CTGAAG | 1 cut(s) | 177 |
| AcyI | GRCGYC | 1 cut(s) | 920 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 70, 197, 753, 804, 902, 1286, 1358, 1359, 1563 |
| AgsI | TTSAA | 9 cut(s) | 182, 268, 309, 628, 794, 1237, 1253, 1422, 1516 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 132 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 680, 712 |
| AluBI | AGCT | 1 cut(s) | 1367 |
| AluI | AGCT | 1 cut(s) | 1367 |
| Alw26I | GTCTC | 7 cut(s) | 422, 454, 461, 582, 1004, 1039, 1219 |
| AoxI | GGCC | 5 cut(s) | 121, 1067, 1288, 1325, 1566 |
| ApaI | GGGCCC | 1 cut(s) | 1570 |
| ApeKI | GCWGC | 1 cut(s) | 1367 |
| ApoI | RAATTY | 3 cut(s) | 397, 628, 867 |
| AseI | ATTAAT | 1 cut(s) | 1133 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1448 |
| AspLEI | GCGC | 1 cut(s) | 922 |
| AspS9I | GGNCC | 8 cut(s) | 121, 200, 891, 1289, 1325, 1559, 1566, 1567 |
| AsuC2I | CCSGG | 3 cut(s) | 767, 1074, 1329 |
| AsuHPI | GGTGA | 5 cut(s) | 469, 667, 958, 1052, 1172 |
| AsuII | TTCGAA | 1 cut(s) | 610 |
| AvaII | GGWCC | 3 cut(s) | 200, 891, 1559 |
| BaeGI | GKGCMC | 1 cut(s) | 1570 |
| BanI | GGYRCC | 1 cut(s) | 919 |
| BanII | GRGCYC | 3 cut(s) | 329, 1556, 1570 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 710, 742 |
| BauI | CACGAG | 1 cut(s) | 1574 |
| BbsI | GAAGAC | 3 cut(s) | 491, 599, 821 |
| BbvCI | CCTCAGC | 1 cut(s) | 1095 |
| BbvI | GCAGC | 1 cut(s) | 1354 |
| BceAI | ACGGC | 2 cut(s) | 9, 700 |
| BciVI | GTATCC | 1 cut(s) | 71 |
| BclI | TGATCA | 1 cut(s) | 822 |
| BcnI | CCSGG | 3 cut(s) | 767, 1074, 1329 |
| BcoDI | GTCTC | 7 cut(s) | 422, 454, 461, 582, 1004, 1039, 1219 |
| BfaI | CTAG | 1 cut(s) | 1503 |
| BfmI | CTRYAG | 2 cut(s) | 886, 1368 |
| BfoI | RGCGCY | 1 cut(s) | 923 |
| BfuI | GTATCC | 1 cut(s) | 71 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1075 |
| BglII | AGATCT | 1 cut(s) | 477 |
| BisI | GCNGC | 5 cut(s) | 150, 153, 641, 1070, 1368 |
| BlsI | GCNGC | 5 cut(s) | 151, 154, 642, 1071, 1369 |
| Bme1390I | CCNGG | 3 cut(s) | 767, 1074, 1329 |
| Bme18I | GGWCC | 3 cut(s) | 200, 891, 1559 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 132 |
| BmgT120I | GGNCC | 8 cut(s) | 121, 200, 891, 1289, 1325, 1559, 1566, 1567 |
| BmiI | GGNNCC | 7 cut(s) | 201, 202, 893, 921, 1291, 1555, 1568 |
| BmrFI | CCNGG | 3 cut(s) | 767, 1074, 1329 |
| BmrI | ACTGGG | 1 cut(s) | 115 |
| BmsI | GCATC | 1 cut(s) | 1117 |
| BmuI | ACTGGG | 1 cut(s) | 115 |
| BpiI | GAAGAC | 3 cut(s) | 491, 599, 821 |
| BpmI | CTGGAG | 1 cut(s) | 485 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1095 |
| Bpu14I | TTCGAA | 1 cut(s) | 610 |
| BpuMI | CCSGG | 3 cut(s) | 767, 1074, 1329 |
| BsaHI | GRCGYC | 1 cut(s) | 920 |
| BsaJI | CCNNGG | 4 cut(s) | 354, 392, 1073, 1562 |
| BsaWI | WCCGGW | 4 cut(s) | 50, 1037, 1052, 1556 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 953, 983, 1216, 1246 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 70, 197, 753, 804, 902, 1286, 1358, 1359, 1563 |
| Bse1I | ACTGG | 4 cut(s) | 110, 426, 468, 1432 |
| BseDI | CCNNGG | 4 cut(s) | 354, 392, 1073, 1562 |
| BseGI | GGATG | 8 cut(s) | 439, 537, 577, 608, 856, 1132, 1314, 1327 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 70, 197, 753, 804, 902, 1286, 1358, 1359, 1563 |
| BseMII | CTCAG | 3 cut(s) | 342, 440, 1086 |
| BseNI | ACTGG | 4 cut(s) | 110, 426, 468, 1432 |
| BseRI | GAGGAG | 2 cut(s) | 188, 974 |
| BseSI | GKGCMC | 1 cut(s) | 1570 |
| BseXI | GCAGC | 1 cut(s) | 1354 |
| BseYI | CCCAGC | 1 cut(s) | 1304 |
| BsgI | GTGCAG | 1 cut(s) | 113 |
| BshFI | GGCC | 5 cut(s) | 123, 1069, 1290, 1327, 1568 |
| BshNI | GGYRCC | 1 cut(s) | 919 |
| BsiSI | CCGG | 9 cut(s) | 51, 124, 767, 923, 1038, 1053, 1073, 1328, 1557 |
| BslFI | GGGAC | 5 cut(s) | 213, 1208, 1276, 1378, 1474 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 70, 197, 753, 804, 902, 1286, 1358, 1359, 1563 |
| BsmAI | GTCTC | 7 cut(s) | 422, 454, 461, 582, 1004, 1039, 1219 |
| BsmBI | CGTCTC | 2 cut(s) | 422, 461 |
| BsmFI | GGGAC | 5 cut(s) | 213, 1208, 1276, 1378, 1474 |
| BsnI | GGCC | 5 cut(s) | 123, 1069, 1290, 1327, 1568 |
| Bsp119I | TTCGAA | 1 cut(s) | 610 |
| Bsp120I | GGGCCC | 1 cut(s) | 1566 |
| Bsp1286I | GDGCHC | 3 cut(s) | 329, 1556, 1570 |
| Bsp143I | GATC | 4 cut(s) | 331, 445, 477, 822 |
| BspANI | GGCC | 5 cut(s) | 123, 1069, 1290, 1327, 1568 |
| BspCNI | CTCAG | 3 cut(s) | 341, 441, 1087 |
| BspLI | GGNNCC | 7 cut(s) | 201, 202, 893, 921, 1291, 1555, 1568 |
| BspMAI | CTGCAG | 1 cut(s) | 1372 |
| BspQI | GCTCTTC | 1 cut(s) | 1164 |
| BspT104I | TTCGAA | 1 cut(s) | 610 |
| BspT107I | GGYRCC | 1 cut(s) | 919 |
| BsrBI | CCGCTC | 1 cut(s) | 1174 |
| BsrI | ACTGG | 4 cut(s) | 110, 426, 468, 1432 |
| BssECI | CCNNGG | 4 cut(s) | 354, 392, 1073, 1562 |
| BssMI | GATC | 4 cut(s) | 331, 445, 477, 822 |
| BssNI | GRCGYC | 1 cut(s) | 920 |
| BssSI | CACGAG | 1 cut(s) | 1574 |
| BssT1I | CCWWGG | 2 cut(s) | 392, 1562 |
| Bst2BI | CACGAG | 1 cut(s) | 1574 |
| Bst4CI | ACNGT | 5 cut(s) | 130, 247, 820, 1230, 1546 |
| Bst6I | CTCTTC | 3 cut(s) | 153, 365, 1164 |
| BstACI | GRCGYC | 1 cut(s) | 920 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 416 |
| BstBI | TTCGAA | 1 cut(s) | 610 |
| BstC8I | GCNNGC | 2 cut(s) | 121, 1176 |
| BstDEI | CTNAG | 3 cut(s) | 328, 449, 1095 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 68 |
| BstF5I | GGATG | 8 cut(s) | 439, 537, 577, 608, 856, 1132, 1314, 1327 |
| BstH2I | RGCGCY | 1 cut(s) | 923 |
| BstHHI | GCGC | 1 cut(s) | 922 |
| BstKTI | GATC | 4 cut(s) | 334, 448, 480, 825 |
| BstMAI | GTCTC | 7 cut(s) | 422, 454, 461, 582, 1004, 1039, 1219 |
| BstMBI | GATC | 4 cut(s) | 331, 445, 477, 822 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 416, 732, 1075, 1348 |
| BstSCI | CCNGG | 3 cut(s) | 765, 1072, 1327 |
| BstSFI | CTRYAG | 2 cut(s) | 886, 1368 |
| BstSLI | GKGCMC | 1 cut(s) | 1570 |
| BstV1I | GCAGC | 1 cut(s) | 1354 |
| BstV2I | GAAGAC | 3 cut(s) | 491, 599, 821 |
| BstX2I | RGATCY | 1 cut(s) | 477 |
| BstYI | RGATCY | 1 cut(s) | 477 |
| BsuI | GTATCC | 1 cut(s) | 71 |
| BsuRI | GGCC | 5 cut(s) | 123, 1069, 1290, 1327, 1568 |
| BtsCI | GGATG | 8 cut(s) | 439, 537, 577, 608, 856, 1132, 1314, 1327 |
| BtsIMutI | CAGTG | 4 cut(s) | 252, 419, 825, 1235 |
| Cac8I | GCNNGC | 2 cut(s) | 121, 1176 |
| CfoI | GCGC | 1 cut(s) | 922 |
| Cfr13I | GGNCC | 8 cut(s) | 121, 200, 891, 1289, 1325, 1559, 1566, 1567 |
| CseI | GACGC | 1 cut(s) | 122 |
| CviAII | CATG | 2 cut(s) | 560, 1493 |
| DdeI | CTNAG | 3 cut(s) | 328, 449, 1095 |
| DinI | GGCGCC | 1 cut(s) | 921 |
| DpnI | GATC | 4 cut(s) | 333, 447, 479, 824 |
| DpnII | GATC | 4 cut(s) | 331, 445, 477, 822 |
| DriI | GACNNNNNGTC | 1 cut(s) | 132 |
| Eam1104I | CTCTTC | 3 cut(s) | 153, 365, 1164 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 132 |
| EarI | CTCTTC | 3 cut(s) | 153, 365, 1164 |
| EciI | GGCGGA | 3 cut(s) | 304, 615, 1130 |
| Eco130I | CCWWGG | 2 cut(s) | 392, 1562 |
| Eco24I | GRGCYC | 3 cut(s) | 329, 1556, 1570 |
| Eco47I | GGWCC | 3 cut(s) | 200, 891, 1559 |
| Eco57I | CTGAAG | 1 cut(s) | 177 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 68 |
| EcoO109I | RGGNCCY | 2 cut(s) | 200, 891 |
| EcoT14I | CCWWGG | 2 cut(s) | 392, 1562 |
| EcoT22I | ATGCAT | 2 cut(s) | 412, 1132 |
| EcoT38I | GRGCYC | 3 cut(s) | 329, 1556, 1570 |
| EgeI | GGCGCC | 1 cut(s) | 921 |
| EheI | GGCGCC | 1 cut(s) | 921 |
| ErhI | CCWWGG | 2 cut(s) | 392, 1562 |
| Esp3I | CGTCTC | 2 cut(s) | 422, 461 |
| FaeI | CATG | 2 cut(s) | 563, 1496 |
| FaqI | GGGAC | 5 cut(s) | 213, 1208, 1276, 1378, 1474 |
| FatI | CATG | 2 cut(s) | 559, 1492 |
| FauI | CCCGC | 2 cut(s) | 112, 1167 |
| FbaI | TGATCA | 1 cut(s) | 822 |
| Fnu4HI | GCNGC | 5 cut(s) | 150, 153, 641, 1070, 1368 |
| FokI | GGATG | 8 cut(s) | 446, 544, 584, 615, 863, 1139, 1321, 1334 |
| FriOI | GRGCYC | 3 cut(s) | 329, 1556, 1570 |
| Fsp4HI | GCNGC | 5 cut(s) | 150, 153, 641, 1070, 1368 |
| FspBI | CTAG | 1 cut(s) | 1503 |
| GlaI | GCGC | 1 cut(s) | 921 |
| GluI | GCNGC | 5 cut(s) | 150, 153, 641, 1070, 1368 |
| GsaI | CCCAGC | 1 cut(s) | 1308 |
| GsuI | CTGGAG | 1 cut(s) | 485 |
| HaeII | RGCGCY | 1 cut(s) | 923 |
| HaeIII | GGCC | 5 cut(s) | 123, 1069, 1290, 1327, 1568 |
| HapII | CCGG | 9 cut(s) | 51, 124, 767, 923, 1038, 1053, 1073, 1328, 1557 |
| HgaI | GACGC | 1 cut(s) | 122 |
| HhaI | GCGC | 1 cut(s) | 922 |
| Hin1I | GRCGYC | 1 cut(s) | 920 |
| Hin1II | CATG | 2 cut(s) | 563, 1496 |
| Hin6I | GCGC | 1 cut(s) | 920 |
| HinP1I | GCGC | 1 cut(s) | 920 |
| HinfI | GANTC | 5 cut(s) | 182, 612, 974, 1449, 1496 |
| HpaII | CCGG | 9 cut(s) | 51, 124, 767, 923, 1038, 1053, 1073, 1328, 1557 |
| HphI | GGTGA | 5 cut(s) | 469, 667, 958, 1052, 1172 |
| Hpy166II | GTNNAC | 2 cut(s) | 250, 744 |
| Hpy188III | TCNNGA | 3 cut(s) | 191, 268, 1574 |
| Hpy8I | GTNNAC | 2 cut(s) | 250, 744 |
| Hpy99I | CGWCG | 1 cut(s) | 138 |
| HpyAV | CCTTC | 9 cut(s) | 17, 64, 974, 996, 1037, 1082, 1215, 1309, 1351 |
| HpyCH4III | ACNGT | 5 cut(s) | 130, 247, 820, 1230, 1546 |
| HpyCH4IV | ACGT | 1 cut(s) | 470 |
| HpyCH4V | TGCA | 8 cut(s) | 34, 94, 382, 410, 419, 862, 1130, 1370 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 416, 732, 1075, 1348 |
| HpyF3I | CTNAG | 3 cut(s) | 328, 449, 1095 |
| HpySE526I | ACGT | 1 cut(s) | 470 |
| Hsp92I | GRCGYC | 1 cut(s) | 920 |
| Hsp92II | CATG | 2 cut(s) | 563, 1496 |
| HspAI | GCGC | 1 cut(s) | 920 |
| KasI | GGCGCC | 1 cut(s) | 919 |
| KflI | GGGWCCC | 1 cut(s) | 200 |
| Ksp22I | TGATCA | 1 cut(s) | 822 |
| Kzo9I | GATC | 4 cut(s) | 331, 445, 477, 822 |
| LguI | GCTCTTC | 1 cut(s) | 1164 |
| LmnI | GCTCC | 1 cut(s) | 1559 |
| Lsp1109I | GCAGC | 1 cut(s) | 1354 |
| LweI | GCATC | 1 cut(s) | 1117 |
| MaeI | CTAG | 1 cut(s) | 1503 |
| MaeII | ACGT | 1 cut(s) | 470 |
| MaeIII | GTNAC | 6 cut(s) | 101, 932, 1048, 1331, 1435, 1530 |
| MalI | GATC | 4 cut(s) | 333, 447, 479, 824 |
| MbiI | CCGCTC | 1 cut(s) | 1174 |
| MboI | GATC | 4 cut(s) | 331, 445, 477, 822 |
| MboII | GAAGA | 9 cut(s) | 122, 170, 382, 491, 599, 784, 826, 1011, 1181 |
| MflI | RGATCY | 1 cut(s) | 477 |
| MhlI | GDGCHC | 3 cut(s) | 329, 1556, 1570 |
| MluCI | AATT | 9 cut(s) | 397, 537, 628, 857, 867, 1105, 1134, 1212, 1297 |
| Mly113I | GGCGCC | 1 cut(s) | 920 |
| MlyI | GAGTC | 1 cut(s) | 1490 |
| MmeI | TCCRAC | 3 cut(s) | 22, 342, 951 |
| Mph1103I | ATGCAT | 2 cut(s) | 412, 1132 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1448 |
| MseI | TTAA | 4 cut(s) | 275, 516, 837, 1133 |
| MspI | CCGG | 9 cut(s) | 51, 124, 767, 923, 1038, 1053, 1073, 1328, 1557 |
| MspR9I | CCNGG | 3 cut(s) | 767, 1074, 1329 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 416, 732, 1075, 1348 |
| NarI | GGCGCC | 1 cut(s) | 920 |
| NciI | CCSGG | 3 cut(s) | 767, 1074, 1329 |
| NdeII | GATC | 4 cut(s) | 331, 445, 477, 822 |
| NlaIII | CATG | 2 cut(s) | 563, 1496 |
| NlaIV | GGNNCC | 7 cut(s) | 201, 202, 893, 921, 1291, 1555, 1568 |
| NmuCI | GTSAC | 2 cut(s) | 101, 1048 |
| NsiI | ATGCAT | 2 cut(s) | 412, 1132 |
| NspV | TTCGAA | 1 cut(s) | 610 |
| PciSI | GCTCTTC | 1 cut(s) | 1164 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1448 |
| PfeI | GAWTC | 4 cut(s) | 182, 612, 974, 1449 |
| PkrI | GCNGC | 5 cut(s) | 151, 154, 642, 1071, 1369 |
| PleI | GAGTC | 1 cut(s) | 1490 |
| PluTI | GGCGCC | 1 cut(s) | 923 |
| PpsI | GAGTC | 1 cut(s) | 1490 |
| PpuMI | RGGWCCY | 2 cut(s) | 200, 891 |
| PshBI | ATTAAT | 1 cut(s) | 1133 |
| Psp5II | RGGWCCY | 2 cut(s) | 200, 891 |
| PspFI | CCCAGC | 1 cut(s) | 1304 |
| PspN4I | GGNNCC | 7 cut(s) | 201, 202, 893, 921, 1291, 1555, 1568 |
| PspOMI | GGGCCC | 1 cut(s) | 1566 |
| PspPI | GGNCC | 8 cut(s) | 121, 200, 891, 1289, 1325, 1559, 1566, 1567 |
| PspPPI | RGGWCCY | 2 cut(s) | 200, 891 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 213, 245 |
| PstI | CTGCAG | 1 cut(s) | 1372 |
| PsuI | RGATCY | 1 cut(s) | 477 |
| SapI | GCTCTTC | 1 cut(s) | 1164 |
| SaqAI | TTAA | 4 cut(s) | 275, 516, 837, 1133 |
| SatI | GCNGC | 5 cut(s) | 150, 153, 641, 1070, 1368 |
| Sau3AI | GATC | 4 cut(s) | 331, 445, 477, 822 |
| Sau96I | GGNCC | 8 cut(s) | 121, 200, 891, 1289, 1325, 1559, 1566, 1567 |
| SchI | GAGTC | 1 cut(s) | 1490 |
| ScrFI | CCNGG | 3 cut(s) | 767, 1074, 1329 |
| SduI | GDGCHC | 3 cut(s) | 329, 1556, 1570 |
| SfaNI | GCATC | 1 cut(s) | 1117 |
| SfcI | CTRYAG | 2 cut(s) | 886, 1368 |
| SfoI | GGCGCC | 1 cut(s) | 921 |
| SfuI | TTCGAA | 1 cut(s) | 610 |
| SinI | GGWCC | 3 cut(s) | 200, 891, 1559 |
| Sse9I | AATT | 9 cut(s) | 397, 537, 628, 857, 867, 1105, 1134, 1212, 1297 |
| SspDI | GGCGCC | 1 cut(s) | 919 |
| SspMI | CTAG | 1 cut(s) | 1503 |
| StyD4I | CCNGG | 3 cut(s) | 765, 1072, 1327 |
| StyI | CCWWGG | 2 cut(s) | 392, 1562 |
| TaaI | ACNGT | 5 cut(s) | 130, 247, 820, 1230, 1546 |
| TaiI | ACGT | 1 cut(s) | 473 |
| TaqI | TCGA | 5 cut(s) | 136, 487, 610, 649, 1346 |
| TasI | AATT | 9 cut(s) | 397, 537, 628, 857, 867, 1105, 1134, 1212, 1297 |
| TauI | GCSGC | 4 cut(s) | 152, 155, 643, 1072 |
| TfiI | GAWTC | 4 cut(s) | 182, 612, 974, 1449 |
| Tru1I | TTAA | 4 cut(s) | 275, 516, 837, 1133 |
| Tru9I | TTAA | 4 cut(s) | 275, 516, 837, 1133 |
| TscAI | CASTG | 4 cut(s) | 252, 426, 825, 1235 |
| TseFI | GTSAC | 2 cut(s) | 101, 1048 |
| TseI | GCWGC | 1 cut(s) | 1367 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 1048 |
| TspDTI | ATGAA | 1 cut(s) | 548 |
| TspGWI | ACGGA | 4 cut(s) | 446, 584, 600, 1511 |
| TspRI | CASTG | 4 cut(s) | 252, 426, 825, 1235 |
| VpaK11BI | GGWCC | 3 cut(s) | 200, 891, 1559 |
| VspI | ATTAAT | 1 cut(s) | 1133 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 68 |
| XapI | RAATTY | 3 cut(s) | 397, 628, 867 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1448 |
| XspI | CTAG | 1 cut(s) | 1503 |
| Zsp2I | ATGCAT | 2 cut(s) | 412, 1132 |