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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 719 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 622 |
| AatII | GACGTC | 1 cut(s) | 551 |
| Acc36I | ACCTGC | 1 cut(s) | 310 |
| AciI | CCGC | 1 cut(s) | 463 |
| AclWI | GGATC | 2 cut(s) | 94, 711 |
| AcyI | GRCGYC | 3 cut(s) | 527, 548, 563 |
| AfaI | GTAC | 2 cut(s) | 168, 252 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 279 |
| AflII | CTTAAG | 1 cut(s) | 308 |
| AgsI | TTSAA | 6 cut(s) | 44, 71, 190, 356, 380, 644 |
| AjiI | CACGTC | 1 cut(s) | 593 |
| AjnI | CCWGG | 2 cut(s) | 203, 522 |
| AluBI | AGCT | 2 cut(s) | 179, 340 |
| AluI | AGCT | 2 cut(s) | 179, 340 |
| Alw26I | GTCTC | 3 cut(s) | 42, 194, 428 |
| AlwI | GGATC | 2 cut(s) | 94, 711 |
| AoxI | GGCC | 5 cut(s) | 31, 277, 495, 520, 556 |
| ApeKI | GCWGC | 5 cut(s) | 328, 457, 460, 584, 686 |
| AspS9I | GGNCC | 2 cut(s) | 277, 495 |
| AsuC2I | CCSGG | 1 cut(s) | 281 |
| AsuHPI | GGTGA | 2 cut(s) | 496, 522 |
| AsuNHI | GCTAGC | 1 cut(s) | 223 |
| BbsI | GAAGAC | 1 cut(s) | 197 |
| BbvI | GCAGC | 5 cut(s) | 340, 444, 472, 596, 673 |
| BccI | CCATC | 1 cut(s) | 133 |
| BceAI | ACGGC | 1 cut(s) | 550 |
| BciT130I | CCWGG | 2 cut(s) | 205, 524 |
| BciVI | GTATCC | 1 cut(s) | 591 |
| BclI | TGATCA | 1 cut(s) | 295 |
| BcnI | CCSGG | 1 cut(s) | 281 |
| BcoDI | GTCTC | 3 cut(s) | 42, 194, 428 |
| BfaI | CTAG | 3 cut(s) | 146, 224, 650 |
| BfmI | CTRYAG | 2 cut(s) | 458, 687 |
| BfrI | CTTAAG | 1 cut(s) | 308 |
| BfuAI | ACCTGC | 1 cut(s) | 310 |
| BfuI | GTATCC | 1 cut(s) | 591 |
| BisI | GCNGC | 6 cut(s) | 329, 458, 461, 464, 585, 687 |
| BlpI | GCTNAGC | 1 cut(s) | 467 |
| BlsI | GCNGC | 6 cut(s) | 330, 459, 462, 465, 586, 688 |
| Bme1390I | CCNGG | 3 cut(s) | 205, 281, 524 |
| BmgBI | CACGTC | 1 cut(s) | 593 |
| BmgT120I | GGNCC | 2 cut(s) | 277, 495 |
| BmrFI | CCNGG | 3 cut(s) | 205, 281, 524 |
| BmrI | ACTGGG | 1 cut(s) | 684 |
| BmtI | GCTAGC | 1 cut(s) | 227 |
| BmuI | ACTGGG | 1 cut(s) | 684 |
| BpiI | GAAGAC | 1 cut(s) | 197 |
| Bpu10I | CCTNAGC | 1 cut(s) | 680 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 467 |
| BpuEI | CTTGAG | 2 cut(s) | 362, 467 |
| BpuMI | CCSGG | 1 cut(s) | 281 |
| BsaHI | GRCGYC | 3 cut(s) | 527, 548, 563 |
| BsaI | GGTCTC | 1 cut(s) | 194 |
| BsaJI | CCNNGG | 4 cut(s) | 204, 230, 273, 566 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 279 |
| Bse1I | ACTGG | 1 cut(s) | 679 |
| BseBI | CCWGG | 2 cut(s) | 205, 524 |
| BseDI | CCNNGG | 4 cut(s) | 204, 230, 273, 566 |
| BseGI | GGATG | 2 cut(s) | 169, 285 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 279 |
| BseMII | CTCAG | 1 cut(s) | 482 |
| BseNI | ACTGG | 1 cut(s) | 679 |
| BseRI | GAGGAG | 1 cut(s) | 338 |
| BseXI | GCAGC | 5 cut(s) | 340, 444, 472, 596, 673 |
| BsgI | GTGCAG | 1 cut(s) | 288 |
| BshFI | GGCC | 5 cut(s) | 33, 279, 497, 522, 558 |
| BsiSI | CCGG | 1 cut(s) | 280 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 279 |
| BsmAI | GTCTC | 3 cut(s) | 42, 194, 428 |
| BsnI | GGCC | 5 cut(s) | 33, 279, 497, 522, 558 |
| Bso31I | GGTCTC | 1 cut(s) | 194 |
| Bsp1407I | TGTACA | 1 cut(s) | 166 |
| Bsp143I | GATC | 4 cut(s) | 99, 295, 661, 703 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 467 |
| Bsp19I | CCATGG | 2 cut(s) | 230, 273 |
| BspACI | CCGC | 1 cut(s) | 463 |
| BspANI | GGCC | 5 cut(s) | 33, 279, 497, 522, 558 |
| BspCNI | CTCAG | 1 cut(s) | 483 |
| BspMAI | CTGCAG | 2 cut(s) | 462, 691 |
| BspMI | ACCTGC | 1 cut(s) | 310 |
| BspOI | GCTAGC | 1 cut(s) | 227 |
| BspPI | GGATC | 2 cut(s) | 94, 711 |
| BspQI | GCTCTTC | 1 cut(s) | 274 |
| BspTI | CTTAAG | 1 cut(s) | 308 |
| BspTNI | GGTCTC | 1 cut(s) | 194 |
| BsrGI | TGTACA | 1 cut(s) | 166 |
| BsrI | ACTGG | 1 cut(s) | 679 |
| BssECI | CCNNGG | 4 cut(s) | 204, 230, 273, 566 |
| BssMI | GATC | 4 cut(s) | 99, 295, 661, 703 |
| BssNI | GRCGYC | 3 cut(s) | 527, 548, 563 |
| BssT1I | CCWWGG | 2 cut(s) | 230, 273 |
| Bst2UI | CCWGG | 2 cut(s) | 205, 524 |
| Bst4CI | ACNGT | 1 cut(s) | 538 |
| Bst6I | CTCTTC | 4 cut(s) | 45, 274, 315, 420 |
| BstACI | GRCGYC | 3 cut(s) | 527, 548, 563 |
| BstAFI | CTTAAG | 1 cut(s) | 308 |
| BstAUI | TGTACA | 1 cut(s) | 166 |
| BstC8I | GCNNGC | 1 cut(s) | 225 |
| BstDEI | CTNAG | 3 cut(s) | 467, 491, 680 |
| BstDSI | CCRYGG | 3 cut(s) | 230, 273, 566 |
| BstF5I | GGATG | 2 cut(s) | 169, 285 |
| BstKTI | GATC | 4 cut(s) | 102, 298, 664, 706 |
| BstMAI | GTCTC | 3 cut(s) | 42, 194, 428 |
| BstMBI | GATC | 4 cut(s) | 99, 295, 661, 703 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 337, 463, 584, 676 |
| BstNI | CCWGG | 2 cut(s) | 205, 524 |
| BstSCI | CCNGG | 3 cut(s) | 203, 279, 522 |
| BstSFI | CTRYAG | 2 cut(s) | 458, 687 |
| BstV1I | GCAGC | 5 cut(s) | 340, 444, 472, 596, 673 |
| BstV2I | GAAGAC | 1 cut(s) | 197 |
| BstX2I | RGATCY | 2 cut(s) | 99, 703 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 505 |
| BstYI | RGATCY | 2 cut(s) | 99, 703 |
| BsuI | GTATCC | 1 cut(s) | 591 |
| BsuRI | GGCC | 5 cut(s) | 33, 279, 497, 522, 558 |
| BtgI | CCRYGG | 3 cut(s) | 230, 273, 566 |
| BtrI | CACGTC | 1 cut(s) | 593 |
| BtsCI | GGATG | 2 cut(s) | 169, 285 |
| BtsIMutI | CAGTG | 2 cut(s) | 257, 543 |
| BveI | ACCTGC | 1 cut(s) | 310 |
| Cac8I | GCNNGC | 1 cut(s) | 225 |
| Cfr13I | GGNCC | 2 cut(s) | 277, 495 |
| CseI | GACGC | 2 cut(s) | 516, 571 |
| Csp6I | GTAC | 2 cut(s) | 167, 251 |
| CviAII | CATG | 6 cut(s) | 107, 133, 231, 274, 505, 579 |
| CviQI | GTAC | 2 cut(s) | 167, 251 |
| DdeI | CTNAG | 3 cut(s) | 467, 491, 680 |
| DpnI | GATC | 4 cut(s) | 101, 297, 663, 705 |
| DpnII | GATC | 4 cut(s) | 99, 295, 661, 703 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 622 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 622 |
| Eam1104I | CTCTTC | 4 cut(s) | 45, 274, 315, 420 |
| EarI | CTCTTC | 4 cut(s) | 45, 274, 315, 420 |
| Eco130I | CCWWGG | 2 cut(s) | 230, 273 |
| Eco147I | AGGCCT | 2 cut(s) | 33, 558 |
| Eco31I | GGTCTC | 1 cut(s) | 194 |
| EcoRII | CCWGG | 2 cut(s) | 203, 522 |
| EcoT14I | CCWWGG | 2 cut(s) | 230, 273 |
| EcoT22I | ATGCAT | 1 cut(s) | 580 |
| ErhI | CCWWGG | 2 cut(s) | 230, 273 |
| FaeI | CATG | 6 cut(s) | 110, 136, 234, 277, 508, 582 |
| FatI | CATG | 6 cut(s) | 106, 132, 230, 273, 504, 578 |
| FbaI | TGATCA | 1 cut(s) | 295 |
| Fnu4HI | GCNGC | 6 cut(s) | 329, 458, 461, 464, 585, 687 |
| FokI | GGATG | 2 cut(s) | 156, 272 |
| Fsp4HI | GCNGC | 6 cut(s) | 329, 458, 461, 464, 585, 687 |
| FspBI | CTAG | 3 cut(s) | 146, 224, 650 |
| GluI | GCNGC | 6 cut(s) | 329, 458, 461, 464, 585, 687 |
| HaeIII | GGCC | 5 cut(s) | 33, 279, 497, 522, 558 |
| HapII | CCGG | 1 cut(s) | 280 |
| HgaI | GACGC | 2 cut(s) | 516, 571 |
| Hin1I | GRCGYC | 3 cut(s) | 527, 548, 563 |
| Hin1II | CATG | 6 cut(s) | 110, 136, 234, 277, 508, 582 |
| HincII | GTYRAC | 1 cut(s) | 746 |
| HindII | GTYRAC | 1 cut(s) | 746 |
| HinfI | GANTC | 5 cut(s) | 4, 83, 333, 629, 693 |
| HpaII | CCGG | 1 cut(s) | 280 |
| HphI | GGTGA | 2 cut(s) | 496, 522 |
| Hpy166II | GTNNAC | 3 cut(s) | 570, 735, 746 |
| Hpy188I | TCNGA | 3 cut(s) | 9, 628, 708 |
| Hpy188III | TCNNGA | 3 cut(s) | 44, 515, 552 |
| Hpy8I | GTNNAC | 3 cut(s) | 570, 735, 746 |
| Hpy99I | CGWCG | 2 cut(s) | 363, 550 |
| HpyAV | CCTTC | 2 cut(s) | 113, 512 |
| HpyCH4III | ACNGT | 1 cut(s) | 538 |
| HpyCH4IV | ACGT | 2 cut(s) | 548, 592 |
| HpyCH4V | TGCA | 5 cut(s) | 305, 460, 578, 670, 689 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 337, 463, 584, 676 |
| HpyF3I | CTNAG | 3 cut(s) | 467, 491, 680 |
| HpySE526I | ACGT | 2 cut(s) | 548, 592 |
| Hsp92I | GRCGYC | 3 cut(s) | 527, 548, 563 |
| Hsp92II | CATG | 6 cut(s) | 110, 136, 234, 277, 508, 582 |
| Ksp22I | TGATCA | 1 cut(s) | 295 |
| Kzo9I | GATC | 4 cut(s) | 99, 295, 661, 703 |
| LguI | GCTCTTC | 1 cut(s) | 274 |
| LmnI | GCTCC | 1 cut(s) | 325 |
| Lsp1109I | GCAGC | 5 cut(s) | 340, 444, 472, 596, 673 |
| MaeI | CTAG | 3 cut(s) | 146, 224, 650 |
| MaeII | ACGT | 2 cut(s) | 548, 592 |
| MaeIII | GTNAC | 3 cut(s) | 84, 398, 528 |
| MalI | GATC | 4 cut(s) | 101, 297, 663, 705 |
| MboI | GATC | 4 cut(s) | 99, 295, 661, 703 |
| MboII | GAAGA | 5 cut(s) | 32, 202, 261, 332, 437 |
| MflI | RGATCY | 2 cut(s) | 99, 703 |
| MluCI | AATT | 5 cut(s) | 72, 162, 290, 390, 727 |
| MlyI | GAGTC | 2 cut(s) | 92, 623 |
| MmeI | TCCRAC | 2 cut(s) | 190, 327 |
| MnlI | CCTC | 7 cut(s) | 43, 104, 316, 442, 486, 548, 596 |
| Mph1103I | ATGCAT | 1 cut(s) | 580 |
| MseI | TTAA | 1 cut(s) | 309 |
| MslI | CAYNNNNRTG | 2 cut(s) | 137, 503 |
| MspA1I | CMGCKG | 1 cut(s) | 463 |
| MspCI | CTTAAG | 1 cut(s) | 308 |
| MspI | CCGG | 1 cut(s) | 280 |
| MspR9I | CCNGG | 3 cut(s) | 205, 281, 524 |
| MvaI | CCWGG | 2 cut(s) | 205, 524 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 337, 463, 584, 676 |
| NciI | CCSGG | 1 cut(s) | 281 |
| NcoI | CCATGG | 2 cut(s) | 230, 273 |
| NdeII | GATC | 4 cut(s) | 99, 295, 661, 703 |
| NheI | GCTAGC | 1 cut(s) | 223 |
| NlaIII | CATG | 6 cut(s) | 110, 136, 234, 277, 508, 582 |
| NmuCI | GTSAC | 3 cut(s) | 84, 398, 528 |
| NsiI | ATGCAT | 1 cut(s) | 580 |
| PceI | AGGCCT | 2 cut(s) | 33, 558 |
| PciSI | GCTCTTC | 1 cut(s) | 274 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 598 |
| PfeI | GAWTC | 3 cut(s) | 4, 333, 693 |
| PkrI | GCNGC | 6 cut(s) | 330, 459, 462, 465, 586, 688 |
| PleI | GAGTC | 2 cut(s) | 91, 623 |
| PpsI | GAGTC | 2 cut(s) | 91, 623 |
| PsiI | TTATAA | 1 cut(s) | 719 |
| Psp6I | CCWGG | 2 cut(s) | 203, 522 |
| PspGI | CCWGG | 2 cut(s) | 203, 522 |
| PspPI | GGNCC | 2 cut(s) | 277, 495 |
| PstI | CTGCAG | 2 cut(s) | 462, 691 |
| PsuI | RGATCY | 2 cut(s) | 99, 703 |
| RsaI | GTAC | 2 cut(s) | 168, 252 |
| RsaNI | GTAC | 2 cut(s) | 167, 251 |
| RseI | CAYNNNNRTG | 2 cut(s) | 137, 503 |
| SapI | GCTCTTC | 1 cut(s) | 274 |
| SaqAI | TTAA | 1 cut(s) | 309 |
| SatI | GCNGC | 6 cut(s) | 329, 458, 461, 464, 585, 687 |
| Sau3AI | GATC | 4 cut(s) | 99, 295, 661, 703 |
| Sau96I | GGNCC | 2 cut(s) | 277, 495 |
| SchI | GAGTC | 2 cut(s) | 92, 623 |
| ScrFI | CCNGG | 3 cut(s) | 205, 281, 524 |
| SetI | ASST | 8 cut(s) | 62, 181, 206, 249, 304, 342, 551, 595 |
| SfcI | CTRYAG | 2 cut(s) | 458, 687 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 137, 503 |
| SmlI | CTYRAG | 3 cut(s) | 308, 341, 446 |
| SmoI | CTYRAG | 3 cut(s) | 308, 341, 446 |
| Sse9I | AATT | 5 cut(s) | 72, 162, 290, 390, 727 |
| SseBI | AGGCCT | 2 cut(s) | 33, 558 |
| SsiI | CCGC | 1 cut(s) | 463 |
| SspMI | CTAG | 3 cut(s) | 146, 224, 650 |
| StuI | AGGCCT | 2 cut(s) | 33, 558 |
| StyD4I | CCNGG | 3 cut(s) | 203, 279, 522 |
| StyI | CCWWGG | 2 cut(s) | 230, 273 |
| TaaI | ACNGT | 1 cut(s) | 538 |
| TaiI | ACGT | 2 cut(s) | 551, 595 |
| TasI | AATT | 5 cut(s) | 72, 162, 290, 390, 727 |
| TatI | WGTACW | 2 cut(s) | 166, 250 |
| TauI | GCSGC | 1 cut(s) | 466 |
| TfiI | GAWTC | 3 cut(s) | 4, 333, 693 |
| Tru1I | TTAA | 1 cut(s) | 309 |
| Tru9I | TTAA | 1 cut(s) | 309 |
| TscAI | CASTG | 2 cut(s) | 264, 543 |
| TseFI | GTSAC | 3 cut(s) | 84, 398, 528 |
| TseI | GCWGC | 5 cut(s) | 328, 457, 460, 584, 686 |
| Tsp45I | GTSAC | 3 cut(s) | 84, 398, 528 |
| TspDTI | ATGAA | 1 cut(s) | 95 |
| TspGWI | ACGGA | 1 cut(s) | 174 |
| TspRI | CASTG | 2 cut(s) | 264, 543 |
| Vha464I | CTTAAG | 1 cut(s) | 308 |
| XspI | CTAG | 3 cut(s) | 146, 224, 650 |
| ZraI | GACGTC | 1 cut(s) | 549 |
| Zsp2I | ATGCAT | 1 cut(s) | 580 |