Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 35 - 104 | 4e-13 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 323 |
| AccBSI | CCGCTC | 1 cut(s) | 689 |
| AccII | CGCG | 2 cut(s) | 726, 728 |
| AciI | CCGC | 5 cut(s) | 38, 687, 724, 728, 965 |
| AclI | AACGTT | 1 cut(s) | 793 |
| AclWI | GGATC | 3 cut(s) | 68, 179, 380 |
| AcuI | CTGAAG | 3 cut(s) | 136, 864, 1302 |
| AfaI | GTAC | 4 cut(s) | 882, 931, 1024, 1279 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 156, 323, 469 |
| AgsI | TTSAA | 7 cut(s) | 512, 755, 791, 807, 946, 1034, 1234 |
| AjnI | CCWGG | 1 cut(s) | 824 |
| AluBI | AGCT | 2 cut(s) | 785, 962 |
| AluI | AGCT | 2 cut(s) | 785, 962 |
| AlwI | GGATC | 3 cut(s) | 68, 179, 380 |
| AoxI | GGCC | 1 cut(s) | 1305 |
| ApaI | GGGCCC | 1 cut(s) | 1309 |
| ApeKI | GCWGC | 2 cut(s) | 388, 962 |
| AseI | ATTAAT | 1 cut(s) | 333 |
| AspLEI | GCGC | 3 cut(s) | 400, 585, 728 |
| AspS9I | GGNCC | 4 cut(s) | 285, 460, 1305, 1306 |
| AsuC2I | CCSGG | 2 cut(s) | 339, 1304 |
| AsuHPI | GGTGA | 3 cut(s) | 271, 855, 1182 |
| AvaII | GGWCC | 2 cut(s) | 285, 460 |
| AxyI | CCTNAGG | 1 cut(s) | 1147 |
| BaeGI | GKGCMC | 2 cut(s) | 351, 1309 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1269, 1302 |
| BanII | GRGCYC | 2 cut(s) | 547, 1309 |
| BauI | CACGAG | 2 cut(s) | 107, 1313 |
| BbsI | GAAGAC | 1 cut(s) | 601 |
| BbvCI | CCTCAGC | 1 cut(s) | 1127 |
| BbvI | GCAGC | 2 cut(s) | 375, 949 |
| BccI | CCATC | 4 cut(s) | 317, 409, 451, 473 |
| BciT130I | CCWGG | 1 cut(s) | 826 |
| BcnI | CCSGG | 2 cut(s) | 339, 1304 |
| BfaI | CTAG | 1 cut(s) | 1263 |
| BfmI | CTRYAG | 1 cut(s) | 269 |
| BfoI | RGCGCY | 1 cut(s) | 586 |
| BglII | AGATCT | 1 cut(s) | 80 |
| BisI | GCNGC | 2 cut(s) | 389, 963 |
| BlpI | GCTNAGC | 1 cut(s) | 34 |
| BlsI | GCNGC | 2 cut(s) | 390, 964 |
| Bme1390I | CCNGG | 3 cut(s) | 339, 826, 1304 |
| Bme18I | GGWCC | 2 cut(s) | 285, 460 |
| BmgT120I | GGNCC | 4 cut(s) | 285, 460, 1305, 1306 |
| BmiI | GGNNCC | 5 cut(s) | 315, 462, 722, 1216, 1307 |
| BmrFI | CCNGG | 3 cut(s) | 339, 826, 1304 |
| BmrI | ACTGGG | 1 cut(s) | 780 |
| BmsI | GCATC | 1 cut(s) | 1262 |
| BmuI | ACTGGG | 1 cut(s) | 780 |
| BpiI | GAAGAC | 1 cut(s) | 601 |
| BpmI | CTGGAG | 1 cut(s) | 607 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1127 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 34 |
| BpuEI | CTTGAG | 2 cut(s) | 517, 572 |
| BpuMI | CCSGG | 2 cut(s) | 339, 1304 |
| BsaAI | YACGTR | 1 cut(s) | 884 |
| BsaJI | CCNNGG | 2 cut(s) | 281, 825 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 885, 915 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 156, 323, 469 |
| Bse1I | ACTGG | 4 cut(s) | 742, 775, 953, 996 |
| Bse21I | CCTNAGG | 1 cut(s) | 1147 |
| BseBI | CCWGG | 1 cut(s) | 826 |
| BseDI | CCNNGG | 2 cut(s) | 281, 825 |
| BseGI | GGATG | 4 cut(s) | 420, 610, 1114, 1142 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 156, 323, 469 |
| BseMII | CTCAG | 6 cut(s) | 494, 524, 684, 1014, 1118, 1161 |
| BseNI | ACTGG | 4 cut(s) | 742, 775, 953, 996 |
| BseRI | GAGGAG | 4 cut(s) | 203, 233, 584, 1115 |
| BseSI | GKGCMC | 2 cut(s) | 351, 1309 |
| BseXI | GCAGC | 2 cut(s) | 375, 949 |
| BseYI | CCCAGC | 1 cut(s) | 1193 |
| Bsh1236I | CGCG | 2 cut(s) | 726, 728 |
| BshFI | GGCC | 1 cut(s) | 1307 |
| BsiSI | CCGG | 2 cut(s) | 338, 1303 |
| BslFI | GGGAC | 1 cut(s) | 1305 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 156, 323, 469 |
| BsmFI | GGGAC | 1 cut(s) | 1305 |
| BsmI | GAATGC | 1 cut(s) | 1092 |
| BsnI | GGCC | 1 cut(s) | 1307 |
| Bsp120I | GGGCCC | 1 cut(s) | 1305 |
| Bsp1286I | GDGCHC | 3 cut(s) | 351, 547, 1309 |
| Bsp143I | GATC | 7 cut(s) | 73, 80, 171, 198, 253, 372, 561 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 34 |
| BspACI | CCGC | 5 cut(s) | 38, 687, 724, 728, 965 |
| BspANI | GGCC | 1 cut(s) | 1307 |
| BspCNI | CTCAG | 6 cut(s) | 495, 525, 685, 1013, 1119, 1160 |
| BspFNI | CGCG | 2 cut(s) | 726, 728 |
| BspLI | GGNNCC | 5 cut(s) | 315, 462, 722, 1216, 1307 |
| BspMAI | CTGCAG | 1 cut(s) | 273 |
| BspPI | GGATC | 3 cut(s) | 68, 179, 380 |
| BsrBI | CCGCTC | 1 cut(s) | 689 |
| BsrI | ACTGG | 4 cut(s) | 742, 775, 953, 996 |
| BssECI | CCNNGG | 2 cut(s) | 281, 825 |
| BssMI | GATC | 7 cut(s) | 73, 80, 171, 198, 253, 372, 561 |
| BssSI | CACGAG | 2 cut(s) | 107, 1313 |
| BssT1I | CCWWGG | 1 cut(s) | 281 |
| Bst2BI | CACGAG | 2 cut(s) | 107, 1313 |
| Bst2UI | CCWGG | 1 cut(s) | 826 |
| Bst4CI | ACNGT | 2 cut(s) | 67, 877 |
| Bst6I | CTCTTC | 1 cut(s) | 1235 |
| BstBAI | YACGTR | 1 cut(s) | 884 |
| BstC8I | GCNNGC | 1 cut(s) | 967 |
| BstDEI | CTNAG | 7 cut(s) | 34, 503, 533, 693, 1000, 1127, 1147 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 154 |
| BstF5I | GGATG | 4 cut(s) | 420, 610, 1114, 1142 |
| BstFNI | CGCG | 2 cut(s) | 726, 728 |
| BstH2I | RGCGCY | 1 cut(s) | 586 |
| BstHHI | GCGC | 3 cut(s) | 400, 585, 728 |
| BstKTI | GATC | 7 cut(s) | 76, 83, 174, 201, 256, 375, 564 |
| BstMBI | GATC | 7 cut(s) | 73, 80, 171, 198, 253, 372, 561 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 397 |
| BstNI | CCWGG | 1 cut(s) | 826 |
| BstSCI | CCNGG | 3 cut(s) | 337, 824, 1302 |
| BstSFI | CTRYAG | 1 cut(s) | 269 |
| BstSLI | GKGCMC | 2 cut(s) | 351, 1309 |
| BstSNI | TACGTA | 1 cut(s) | 884 |
| BstUI | CGCG | 2 cut(s) | 726, 728 |
| BstV1I | GCAGC | 2 cut(s) | 375, 949 |
| BstV2I | GAAGAC | 1 cut(s) | 601 |
| BstX2I | RGATCY | 2 cut(s) | 80, 171 |
| BstYI | RGATCY | 2 cut(s) | 80, 171 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1147 |
| BsuRI | GGCC | 1 cut(s) | 1307 |
| BtsCI | GGATG | 4 cut(s) | 420, 610, 1114, 1142 |
| BtsIMutI | CAGTG | 1 cut(s) | 530 |
| Cac8I | GCNNGC | 1 cut(s) | 967 |
| CfoI | GCGC | 3 cut(s) | 400, 585, 728 |
| Cfr13I | GGNCC | 4 cut(s) | 285, 460, 1305, 1306 |
| Csp6I | GTAC | 4 cut(s) | 881, 930, 1023, 1278 |
| CviAII | CATG | 2 cut(s) | 202, 1257 |
| CviQI | GTAC | 4 cut(s) | 881, 930, 1023, 1278 |
| DdeI | CTNAG | 7 cut(s) | 34, 503, 533, 693, 1000, 1127, 1147 |
| DpnI | GATC | 7 cut(s) | 75, 82, 173, 200, 255, 374, 563 |
| DpnII | GATC | 7 cut(s) | 73, 80, 171, 198, 253, 372, 561 |
| DraI | TTTAAA | 1 cut(s) | 241 |
| Eam1104I | CTCTTC | 1 cut(s) | 1235 |
| EarI | CTCTTC | 1 cut(s) | 1235 |
| Eco105I | TACGTA | 1 cut(s) | 884 |
| Eco130I | CCWWGG | 1 cut(s) | 281 |
| Eco24I | GRGCYC | 2 cut(s) | 547, 1309 |
| Eco47I | GGWCC | 2 cut(s) | 285, 460 |
| Eco57I | CTGAAG | 3 cut(s) | 136, 864, 1302 |
| Eco81I | CCTNAGG | 1 cut(s) | 1147 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 154 |
| EcoRII | CCWGG | 1 cut(s) | 824 |
| EcoT14I | CCWWGG | 1 cut(s) | 281 |
| EcoT38I | GRGCYC | 2 cut(s) | 547, 1309 |
| ErhI | CCWWGG | 1 cut(s) | 281 |
| FaeI | CATG | 2 cut(s) | 205, 1260 |
| FaiI | YATR | 8 cut(s) | 203, 440, 455, 579, 627, 658, 743, 1258 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 593, 625 |
| FaqI | GGGAC | 1 cut(s) | 1305 |
| FatI | CATG | 2 cut(s) | 201, 1256 |
| FauI | CCCGC | 1 cut(s) | 958 |
| Fnu4HI | GCNGC | 2 cut(s) | 389, 963 |
| FokI | GGATG | 4 cut(s) | 427, 617, 1121, 1129 |
| FriOI | GRGCYC | 2 cut(s) | 547, 1309 |
| Fsp4HI | GCNGC | 2 cut(s) | 389, 963 |
| FspBI | CTAG | 1 cut(s) | 1263 |
| GlaI | GCGC | 3 cut(s) | 399, 584, 727 |
| GluI | GCNGC | 2 cut(s) | 389, 963 |
| GsaI | CCCAGC | 1 cut(s) | 1197 |
| GsuI | CTGGAG | 1 cut(s) | 607 |
| HaeII | RGCGCY | 1 cut(s) | 586 |
| HaeIII | GGCC | 1 cut(s) | 1307 |
| HapII | CCGG | 2 cut(s) | 338, 1303 |
| HhaI | GCGC | 3 cut(s) | 400, 585, 728 |
| Hin1II | CATG | 2 cut(s) | 205, 1260 |
| Hin6I | GCGC | 3 cut(s) | 398, 583, 726 |
| HinP1I | GCGC | 3 cut(s) | 398, 583, 726 |
| HincII | GTYRAC | 4 cut(s) | 70, 139, 180, 735 |
| HindII | GTYRAC | 4 cut(s) | 70, 139, 180, 735 |
| HinfI | GANTC | 8 cut(s) | 146, 277, 830, 860, 869, 995, 1030, 1293 |
| HpaI | GTTAAC | 3 cut(s) | 139, 180, 735 |
| HpaII | CCGG | 2 cut(s) | 338, 1303 |
| HphI | GGTGA | 3 cut(s) | 271, 855, 1182 |
| Hpy166II | GTNNAC | 5 cut(s) | 70, 139, 180, 735, 1190 |
| Hpy188I | TCNGA | 6 cut(s) | 167, 247, 476, 526, 937, 1003 |
| Hpy188III | TCNNGA | 5 cut(s) | 154, 362, 496, 551, 692 |
| Hpy8I | GTNNAC | 5 cut(s) | 70, 139, 180, 735, 1190 |
| Hpy99I | CGWCG | 2 cut(s) | 816, 877 |
| HpyCH4III | ACNGT | 2 cut(s) | 67, 877 |
| HpyCH4IV | ACGT | 4 cut(s) | 141, 793, 811, 883 |
| HpyCH4V | TGCA | 6 cut(s) | 271, 637, 778, 850, 1090, 1253 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 397 |
| HpyF3I | CTNAG | 7 cut(s) | 34, 503, 533, 693, 1000, 1127, 1147 |
| HpySE526I | ACGT | 4 cut(s) | 141, 793, 811, 883 |
| Hsp92II | CATG | 2 cut(s) | 205, 1260 |
| HspAI | GCGC | 3 cut(s) | 398, 583, 726 |
| KspAI | GTTAAC | 3 cut(s) | 139, 180, 735 |
| Kzo9I | GATC | 7 cut(s) | 73, 80, 171, 198, 253, 372, 561 |
| LmnI | GCTCC | 4 cut(s) | 220, 694, 782, 1220 |
| Lsp1109I | GCAGC | 2 cut(s) | 375, 949 |
| LweI | GCATC | 1 cut(s) | 1262 |
| MaeI | CTAG | 1 cut(s) | 1263 |
| MaeII | ACGT | 4 cut(s) | 141, 793, 811, 883 |
| MaeIII | GTNAC | 3 cut(s) | 431, 682, 838 |
| MalI | GATC | 7 cut(s) | 75, 82, 173, 200, 255, 374, 563 |
| MbiI | CCGCTC | 1 cut(s) | 689 |
| MboI | GATC | 7 cut(s) | 73, 80, 171, 198, 253, 372, 561 |
| MfeI | CAATTG | 1 cut(s) | 615 |
| MflI | RGATCY | 2 cut(s) | 80, 171 |
| MhlI | GDGCHC | 3 cut(s) | 351, 547, 1309 |
| MluCI | AATT | 3 cut(s) | 615, 755, 1054 |
| MlyI | GAGTC | 2 cut(s) | 286, 1287 |
| MmeI | TCCRAC | 3 cut(s) | 33, 341, 454 |
| MseI | TTAA | 7 cut(s) | 86, 123, 138, 179, 240, 333, 734 |
| MspI | CCGG | 2 cut(s) | 338, 1303 |
| MspR9I | CCNGG | 3 cut(s) | 339, 826, 1304 |
| MunI | CAATTG | 1 cut(s) | 615 |
| Mva1269I | GAATGC | 1 cut(s) | 1092 |
| MvaI | CCWGG | 1 cut(s) | 826 |
| MvnI | CGCG | 2 cut(s) | 726, 728 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 397 |
| NciI | CCSGG | 2 cut(s) | 339, 1304 |
| NdeII | GATC | 7 cut(s) | 73, 80, 171, 198, 253, 372, 561 |
| NlaIII | CATG | 2 cut(s) | 205, 1260 |
| NlaIV | GGNNCC | 5 cut(s) | 315, 462, 722, 1216, 1307 |
| PctI | GAATGC | 1 cut(s) | 1092 |
| PfeI | GAWTC | 6 cut(s) | 146, 830, 860, 869, 995, 1030 |
| PflFI | GACNNNGTC | 1 cut(s) | 595 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 323 |
| PfoI | TCCNGGA | 1 cut(s) | 337 |
| PkrI | GCNGC | 2 cut(s) | 390, 964 |
| PleI | GAGTC | 2 cut(s) | 285, 1287 |
| PpsI | GAGTC | 2 cut(s) | 285, 1287 |
| Ppu21I | YACGTR | 1 cut(s) | 884 |
| PshBI | ATTAAT | 1 cut(s) | 333 |
| Psp1406I | AACGTT | 1 cut(s) | 793 |
| Psp6I | CCWGG | 1 cut(s) | 824 |
| PspFI | CCCAGC | 1 cut(s) | 1193 |
| PspGI | CCWGG | 1 cut(s) | 824 |
| PspN4I | GGNNCC | 5 cut(s) | 315, 462, 722, 1216, 1307 |
| PspOMI | GGGCCC | 1 cut(s) | 1305 |
| PspPI | GGNCC | 4 cut(s) | 285, 460, 1305, 1306 |
| PstI | CTGCAG | 1 cut(s) | 273 |
| PsuI | RGATCY | 2 cut(s) | 80, 171 |
| PsyI | GACNNNGTC | 1 cut(s) | 595 |
| RsaI | GTAC | 4 cut(s) | 882, 931, 1024, 1279 |
| RsaNI | GTAC | 4 cut(s) | 881, 930, 1023, 1278 |
| SaqAI | TTAA | 7 cut(s) | 86, 123, 138, 179, 240, 333, 734 |
| SatI | GCNGC | 2 cut(s) | 389, 963 |
| Sau3AI | GATC | 7 cut(s) | 73, 80, 171, 198, 253, 372, 561 |
| Sau96I | GGNCC | 4 cut(s) | 285, 460, 1305, 1306 |
| SchI | GAGTC | 2 cut(s) | 286, 1287 |
| ScrFI | CCNGG | 3 cut(s) | 339, 826, 1304 |
| SduI | GDGCHC | 3 cut(s) | 351, 547, 1309 |
| SfaNI | GCATC | 1 cut(s) | 1262 |
| SfcI | CTRYAG | 1 cut(s) | 269 |
| SinI | GGWCC | 2 cut(s) | 285, 460 |
| SmlI | CTYRAG | 2 cut(s) | 496, 551 |
| SmoI | CTYRAG | 2 cut(s) | 496, 551 |
| SnaBI | TACGTA | 1 cut(s) | 884 |
| Sse9I | AATT | 3 cut(s) | 615, 755, 1054 |
| SsiI | CCGC | 5 cut(s) | 38, 687, 724, 728, 965 |
| SspMI | CTAG | 1 cut(s) | 1263 |
| StyD4I | CCNGG | 3 cut(s) | 337, 824, 1302 |
| StyI | CCWWGG | 1 cut(s) | 281 |
| TaaI | ACNGT | 2 cut(s) | 67, 877 |
| TaiI | ACGT | 4 cut(s) | 144, 796, 814, 886 |
| TaqI | TCGA | 6 cut(s) | 197, 517, 814, 872, 909, 1296 |
| TaqII | GACCGA | 1 cut(s) | 872 |
| TasI | AATT | 3 cut(s) | 615, 755, 1054 |
| TfiI | GAWTC | 6 cut(s) | 146, 830, 860, 869, 995, 1030 |
| Tru1I | TTAA | 7 cut(s) | 86, 123, 138, 179, 240, 333, 734 |
| Tru9I | TTAA | 7 cut(s) | 86, 123, 138, 179, 240, 333, 734 |
| TscAI | CASTG | 1 cut(s) | 537 |
| TseI | GCWGC | 2 cut(s) | 388, 962 |
| TspDTI | ATGAA | 1 cut(s) | 1131 |
| TspGWI | ACGGA | 2 cut(s) | 422, 906 |
| TspRI | CASTG | 1 cut(s) | 537 |
| Tth111I | GACNNNGTC | 1 cut(s) | 595 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 323 |
| VpaK11BI | GGWCC | 2 cut(s) | 285, 460 |
| VspI | ATTAAT | 1 cut(s) | 333 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 154 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1201 |
| XspI | CTAG | 1 cut(s) | 1263 |