Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 35 - 107 | 1e-07 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 409 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 467 |
| AciI | CCGC | 1 cut(s) | 160 |
| AclI | AACGTT | 1 cut(s) | 716 |
| AclWI | GGATC | 5 cut(s) | 27, 61, 63, 335, 348 |
| AcoI | YGGCCR | 1 cut(s) | 36 |
| AcsI | RAATTY | 1 cut(s) | 555 |
| AcuI | CTGAAG | 1 cut(s) | 104 |
| AfaI | GTAC | 2 cut(s) | 166, 602 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 467 |
| AgsI | TTSAA | 3 cut(s) | 44, 212, 277 |
| AluBI | AGCT | 1 cut(s) | 221 |
| AluI | AGCT | 1 cut(s) | 221 |
| Alw26I | GTCTC | 1 cut(s) | 433 |
| AlwI | GGATC | 5 cut(s) | 27, 61, 63, 335, 348 |
| AoxI | GGCC | 2 cut(s) | 36, 183 |
| ApaI | GGGCCC | 1 cut(s) | 187 |
| ApoI | RAATTY | 1 cut(s) | 555 |
| AspS9I | GGNCC | 3 cut(s) | 10, 183, 184 |
| AsuC2I | CCSGG | 1 cut(s) | 746 |
| AsuII | TTCGAA | 1 cut(s) | 150 |
| AvaII | GGWCC | 1 cut(s) | 10 |
| BaeGI | GKGCMC | 1 cut(s) | 187 |
| BalI | TGGCCA | 1 cut(s) | 38 |
| BamHI | GGATCC | 1 cut(s) | 340 |
| BanII | GRGCYC | 1 cut(s) | 187 |
| BccI | CCATC | 2 cut(s) | 323, 702 |
| BclI | TGATCA | 1 cut(s) | 298 |
| BcnI | CCSGG | 1 cut(s) | 746 |
| BcoDI | GTCTC | 1 cut(s) | 433 |
| BfuAI | ACCTGC | 1 cut(s) | 409 |
| BglII | AGATCT | 1 cut(s) | 79 |
| Bme1390I | CCNGG | 1 cut(s) | 746 |
| Bme18I | GGWCC | 1 cut(s) | 10 |
| BmgT120I | GGNCC | 3 cut(s) | 10, 183, 184 |
| BmiI | GGNNCC | 2 cut(s) | 185, 342 |
| BmrFI | CCNGG | 1 cut(s) | 746 |
| BmsI | GCATC | 1 cut(s) | 332 |
| Bpu14I | TTCGAA | 1 cut(s) | 150 |
| BpuMI | CCSGG | 1 cut(s) | 746 |
| BsaJI | CCNNGG | 2 cut(s) | 287, 723 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 467 |
| Bse1I | ACTGG | 2 cut(s) | 70, 592 |
| BseDI | CCNNGG | 2 cut(s) | 287, 723 |
| BseGI | GGATG | 2 cut(s) | 665, 733 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 467 |
| BseMII | CTCAG | 2 cut(s) | 380, 417 |
| BseNI | ACTGG | 2 cut(s) | 70, 592 |
| BseRI | GAGGAG | 1 cut(s) | 20 |
| BseSI | GKGCMC | 1 cut(s) | 187 |
| Bsh1285I | CGRYCG | 1 cut(s) | 741 |
| BshFI | GGCC | 2 cut(s) | 38, 185 |
| BsiEI | CGRYCG | 1 cut(s) | 741 |
| BsiSI | CCGG | 1 cut(s) | 746 |
| BslFI | GGGAC | 1 cut(s) | 463 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 467 |
| BsmAI | GTCTC | 1 cut(s) | 433 |
| BsmFI | GGGAC | 1 cut(s) | 463 |
| BsnI | GGCC | 2 cut(s) | 38, 185 |
| Bsp119I | TTCGAA | 1 cut(s) | 150 |
| Bsp120I | GGGCCC | 1 cut(s) | 183 |
| Bsp1286I | GDGCHC | 1 cut(s) | 187 |
| BspACI | CCGC | 1 cut(s) | 160 |
| BspANI | GGCC | 2 cut(s) | 38, 185 |
| BspCNI | CTCAG | 2 cut(s) | 379, 418 |
| BspHI | TCATGA | 1 cut(s) | 408 |
| BspLI | GGNNCC | 2 cut(s) | 185, 342 |
| BspMI | ACCTGC | 1 cut(s) | 409 |
| BspPI | GGATC | 5 cut(s) | 27, 61, 63, 335, 348 |
| BspT104I | TTCGAA | 1 cut(s) | 150 |
| BsrI | ACTGG | 2 cut(s) | 70, 592 |
| BssECI | CCNNGG | 2 cut(s) | 287, 723 |
| BssT1I | CCWWGG | 1 cut(s) | 723 |
| Bst4CI | ACNGT | 2 cut(s) | 444, 498 |
| Bst6I | CTCTTC | 2 cut(s) | 45, 189 |
| BstBI | TTCGAA | 1 cut(s) | 150 |
| BstDEI | CTNAG | 2 cut(s) | 366, 426 |
| BstDSI | CCRYGG | 1 cut(s) | 287 |
| BstF5I | GGATG | 2 cut(s) | 665, 733 |
| BstMAI | GTCTC | 1 cut(s) | 433 |
| BstMCI | CGRYCG | 1 cut(s) | 741 |
| BstSCI | CCNGG | 1 cut(s) | 744 |
| BstSLI | GKGCMC | 1 cut(s) | 187 |
| BstX2I | RGATCY | 4 cut(s) | 19, 55, 79, 340 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 34 |
| BstYI | RGATCY | 4 cut(s) | 19, 55, 79, 340 |
| BsuRI | GGCC | 2 cut(s) | 38, 185 |
| BtgI | CCRYGG | 1 cut(s) | 287 |
| BtsCI | GGATG | 2 cut(s) | 665, 733 |
| BtsI | GCAGTG | 2 cut(s) | 496, 536 |
| BtsIMutI | CAGTG | 2 cut(s) | 496, 536 |
| BveI | ACCTGC | 1 cut(s) | 409 |
| CciI | TCATGA | 1 cut(s) | 408 |
| Cfr13I | GGNCC | 3 cut(s) | 10, 183, 184 |
| Csp6I | GTAC | 2 cut(s) | 165, 601 |
| CviAII | CATG | 4 cut(s) | 169, 302, 409, 647 |
| CviJI | RGCY | 4 cut(s) | 38, 185, 221, 535 |
| CviKI_1 | RGCY | 4 cut(s) | 38, 185, 221, 535 |
| CviQI | GTAC | 2 cut(s) | 165, 601 |
| DdeI | CTNAG | 2 cut(s) | 366, 426 |
| EaeI | YGGCCR | 1 cut(s) | 36 |
| Eam1104I | CTCTTC | 2 cut(s) | 45, 189 |
| EarI | CTCTTC | 2 cut(s) | 45, 189 |
| Eco130I | CCWWGG | 1 cut(s) | 723 |
| Eco24I | GRGCYC | 1 cut(s) | 187 |
| Eco47I | GGWCC | 1 cut(s) | 10 |
| Eco57I | CTGAAG | 1 cut(s) | 104 |
| EcoO109I | RGGNCCY | 2 cut(s) | 10, 184 |
| EcoT14I | CCWWGG | 1 cut(s) | 723 |
| EcoT22I | ATGCAT | 1 cut(s) | 325 |
| EcoT38I | GRGCYC | 1 cut(s) | 187 |
| ErhI | CCWWGG | 1 cut(s) | 723 |
| FaeI | CATG | 4 cut(s) | 172, 305, 412, 650 |
| FaiI | YATR | 6 cut(s) | 170, 303, 410, 507, 569, 648 |
| FaqI | GGGAC | 1 cut(s) | 463 |
| FatI | CATG | 4 cut(s) | 168, 301, 408, 646 |
| FbaI | TGATCA | 1 cut(s) | 298 |
| FokI | GGATG | 2 cut(s) | 672, 740 |
| FriOI | GRGCYC | 1 cut(s) | 187 |
| HaeIII | GGCC | 2 cut(s) | 38, 185 |
| HapII | CCGG | 1 cut(s) | 746 |
| Hin1II | CATG | 4 cut(s) | 172, 305, 412, 650 |
| HindIII | AAGCTT | 1 cut(s) | 219 |
| HinfI | GANTC | 4 cut(s) | 232, 283, 379, 685 |
| HpaII | CCGG | 1 cut(s) | 746 |
| Hpy166II | GTNNAC | 2 cut(s) | 291, 494 |
| Hpy188I | TCNGA | 6 cut(s) | 60, 84, 231, 328, 427, 690 |
| Hpy188III | TCNNGA | 2 cut(s) | 409, 657 |
| Hpy8I | GTNNAC | 2 cut(s) | 291, 494 |
| HpyAV | CCTTC | 3 cut(s) | 79, 271, 743 |
| HpyCH4III | ACNGT | 2 cut(s) | 444, 498 |
| HpyCH4IV | ACGT | 2 cut(s) | 293, 716 |
| HpyCH4V | TGCA | 4 cut(s) | 323, 489, 541, 670 |
| HpyF3I | CTNAG | 2 cut(s) | 366, 426 |
| HpySE526I | ACGT | 2 cut(s) | 293, 716 |
| Hsp92II | CATG | 4 cut(s) | 172, 305, 412, 650 |
| Ksp22I | TGATCA | 1 cut(s) | 298 |
| LpnPI | CCDG | 6 cut(s) | 83, 414, 430, 594, 605, 642 |
| LweI | GCATC | 1 cut(s) | 332 |
| MaeII | ACGT | 2 cut(s) | 293, 716 |
| MboII | GAAGA | 6 cut(s) | 56, 62, 89, 206, 280, 717 |
| MfeI | CAATTG | 1 cut(s) | 665 |
| MflI | RGATCY | 4 cut(s) | 19, 55, 79, 340 |
| MhlI | GDGCHC | 1 cut(s) | 187 |
| MlsI | TGGCCA | 1 cut(s) | 38 |
| MluCI | AATT | 4 cut(s) | 122, 361, 555, 665 |
| MluNI | TGGCCA | 1 cut(s) | 38 |
| MlyI | GAGTC | 1 cut(s) | 292 |
| MmeI | TCCRAC | 1 cut(s) | 576 |
| MnlI | CCTC | 6 cut(s) | 46, 82, 190, 475, 517, 670 |
| Mox20I | TGGCCA | 1 cut(s) | 38 |
| Mph1103I | ATGCAT | 1 cut(s) | 325 |
| MscI | TGGCCA | 1 cut(s) | 38 |
| MseI | TTAA | 3 cut(s) | 318, 360, 396 |
| Msp20I | TGGCCA | 1 cut(s) | 38 |
| MspI | CCGG | 1 cut(s) | 746 |
| MspR9I | CCNGG | 1 cut(s) | 746 |
| MunI | CAATTG | 1 cut(s) | 665 |
| NciI | CCSGG | 1 cut(s) | 746 |
| NlaIII | CATG | 4 cut(s) | 172, 305, 412, 650 |
| NlaIV | GGNNCC | 2 cut(s) | 185, 342 |
| NsiI | ATGCAT | 1 cut(s) | 325 |
| NspV | TTCGAA | 1 cut(s) | 150 |
| PagI | TCATGA | 1 cut(s) | 408 |
| PfeI | GAWTC | 3 cut(s) | 232, 379, 685 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 467 |
| Ple19I | CGATCG | 1 cut(s) | 741 |
| PleI | GAGTC | 1 cut(s) | 291 |
| PpsI | GAGTC | 1 cut(s) | 291 |
| PpuMI | RGGWCCY | 1 cut(s) | 10 |
| Psp1406I | AACGTT | 1 cut(s) | 716 |
| Psp5II | RGGWCCY | 1 cut(s) | 10 |
| PspN4I | GGNNCC | 2 cut(s) | 185, 342 |
| PspOMI | GGGCCC | 1 cut(s) | 183 |
| PspPI | GGNCC | 3 cut(s) | 10, 183, 184 |
| PspPPI | RGGWCCY | 1 cut(s) | 10 |
| PsuI | RGATCY | 4 cut(s) | 19, 55, 79, 340 |
| PvuI | CGATCG | 1 cut(s) | 741 |
| RsaI | GTAC | 2 cut(s) | 166, 602 |
| RsaNI | GTAC | 2 cut(s) | 165, 601 |
| SaqAI | TTAA | 3 cut(s) | 318, 360, 396 |
| Sau96I | GGNCC | 3 cut(s) | 10, 183, 184 |
| SchI | GAGTC | 1 cut(s) | 292 |
| ScrFI | CCNGG | 1 cut(s) | 746 |
| SduI | GDGCHC | 1 cut(s) | 187 |
| SfaNI | GCATC | 1 cut(s) | 332 |
| SfuI | TTCGAA | 1 cut(s) | 150 |
| SinI | GGWCC | 1 cut(s) | 10 |
| Sse9I | AATT | 4 cut(s) | 122, 361, 555, 665 |
| SsiI | CCGC | 1 cut(s) | 160 |
| StyD4I | CCNGG | 1 cut(s) | 744 |
| StyI | CCWWGG | 1 cut(s) | 723 |
| TaaI | ACNGT | 2 cut(s) | 444, 498 |
| TaiI | ACGT | 2 cut(s) | 296, 719 |
| TaqI | TCGA | 6 cut(s) | 100, 150, 511, 560, 737, 741 |
| TasI | AATT | 4 cut(s) | 122, 361, 555, 665 |
| TfiI | GAWTC | 3 cut(s) | 232, 379, 685 |
| Tru1I | TTAA | 3 cut(s) | 318, 360, 396 |
| Tru9I | TTAA | 3 cut(s) | 318, 360, 396 |
| TscAI | CASTG | 2 cut(s) | 496, 543 |
| TspDTI | ATGAA | 3 cut(s) | 63, 185, 397 |
| TspGWI | ACGGA | 1 cut(s) | 276 |
| TspRI | CASTG | 2 cut(s) | 496, 543 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 467 |
| VpaK11BI | GGWCC | 1 cut(s) | 10 |
| XapI | RAATTY | 1 cut(s) | 555 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 543 |
| Zsp2I | ATGCAT | 1 cut(s) | 325 |