ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 151 - 200 | 4.6e-10 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 868 |
| AciI | CCGC | 3 cut(s) | 317, 395, 644 |
| AclWI | GGATC | 2 cut(s) | 163, 176 |
| AcoI | YGGCCR | 2 cut(s) | 36, 514 |
| AcsI | RAATTY | 3 cut(s) | 20, 234, 670 |
| AcuI | CTGAAG | 1 cut(s) | 287 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 77, 421, 422, 496 |
| AgsI | TTSAA | 5 cut(s) | 130, 250, 530, 631, 659 |
| AjnI | CCWGG | 1 cut(s) | 711 |
| AluBI | AGCT | 4 cut(s) | 109, 526, 725, 834 |
| AluI | AGCT | 4 cut(s) | 109, 526, 725, 834 |
| Alw21I | GWGCWC | 2 cut(s) | 111, 847 |
| AlwI | GGATC | 2 cut(s) | 163, 176 |
| Ama87I | CYCGRG | 1 cut(s) | 399 |
| Aor13HI | TCCGGA | 1 cut(s) | 868 |
| AoxI | GGCC | 5 cut(s) | 36, 514, 709, 714, 729 |
| ApaI | GGGCCC | 1 cut(s) | 733 |
| ApeKI | GCWGC | 2 cut(s) | 313, 722 |
| ApoI | RAATTY | 3 cut(s) | 20, 234, 670 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 540 |
| AspS9I | GGNCC | 4 cut(s) | 715, 729, 730, 866 |
| AsuC2I | CCSGG | 1 cut(s) | 215 |
| AsuHPI | GGTGA | 3 cut(s) | 116, 220, 493 |
| AvaI | CYCGRG | 1 cut(s) | 399 |
| AvaII | GGWCC | 1 cut(s) | 866 |
| AxyI | CCTNAGG | 1 cut(s) | 174 |
| BaeGI | GKGCMC | 1 cut(s) | 733 |
| BalI | TGGCCA | 1 cut(s) | 38 |
| BamHI | GGATCC | 1 cut(s) | 168 |
| BanII | GRGCYC | 3 cut(s) | 111, 186, 733 |
| BauI | CACGAG | 1 cut(s) | 884 |
| Bbv12I | GWGCWC | 2 cut(s) | 111, 847 |
| BbvI | GCAGC | 2 cut(s) | 300, 734 |
| BccI | CCATC | 7 cut(s) | 47, 84, 329, 502, 565, 856, 888 |
| BceAI | ACGGC | 1 cut(s) | 501 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 380, 414 |
| BciT130I | CCWGG | 1 cut(s) | 713 |
| BcnI | CCSGG | 1 cut(s) | 215 |
| BfaI | CTAG | 2 cut(s) | 143, 704 |
| BglII | AGATCT | 2 cut(s) | 262, 454 |
| BisI | GCNGC | 4 cut(s) | 314, 317, 396, 723 |
| BlsI | GCNGC | 4 cut(s) | 315, 318, 397, 724 |
| Bme1390I | CCNGG | 2 cut(s) | 215, 713 |
| Bme18I | GGWCC | 1 cut(s) | 866 |
| BmeT110I | CYCGRG | 1 cut(s) | 399 |
| BmgT120I | GGNCC | 4 cut(s) | 715, 729, 730, 866 |
| BmiI | GGNNCC | 4 cut(s) | 170, 730, 731, 867 |
| BmrFI | CCNGG | 2 cut(s) | 215, 713 |
| Bpu10I | CCTNAGC | 1 cut(s) | 364 |
| BpuEI | CTTGAG | 1 cut(s) | 820 |
| BpuMI | CCSGG | 1 cut(s) | 215 |
| BsaJI | CCNNGG | 1 cut(s) | 290 |
| BsaWI | WCCGGW | 1 cut(s) | 868 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 372, 402 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 77, 421, 422, 496 |
| Bse118I | RCCGGY | 1 cut(s) | 319 |
| Bse1I | ACTGG | 1 cut(s) | 358 |
| Bse21I | CCTNAGG | 1 cut(s) | 174 |
| BseAI | TCCGGA | 1 cut(s) | 868 |
| BseBI | CCWGG | 1 cut(s) | 713 |
| BseDI | CCNNGG | 1 cut(s) | 290 |
| BseGI | GGATG | 2 cut(s) | 13, 184 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 77, 421, 422, 496 |
| BseMII | CTCAG | 3 cut(s) | 472, 677, 744 |
| BseNI | ACTGG | 1 cut(s) | 358 |
| BseRI | GAGGAG | 2 cut(s) | 787, 812 |
| BseSI | GKGCMC | 1 cut(s) | 733 |
| BseXI | GCAGC | 2 cut(s) | 300, 734 |
| BseYI | CCCAGC | 1 cut(s) | 725 |
| BsgI | GTGCAG | 1 cut(s) | 410 |
| BshFI | GGCC | 5 cut(s) | 38, 516, 711, 716, 731 |
| BsiHKAI | GWGCWC | 2 cut(s) | 111, 847 |
| BsiHKCI | CYCGRG | 1 cut(s) | 399 |
| BsiSI | CCGG | 3 cut(s) | 214, 320, 869 |
| BslFI | GGGAC | 1 cut(s) | 823 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 77, 421, 422, 496 |
| BsmFI | GGGAC | 1 cut(s) | 823 |
| BsnI | GGCC | 5 cut(s) | 38, 516, 711, 716, 731 |
| BsoBI | CYCGRG | 1 cut(s) | 399 |
| Bsp120I | GGGCCC | 1 cut(s) | 729 |
| Bsp1286I | GDGCHC | 4 cut(s) | 111, 186, 733, 847 |
| Bsp13I | TCCGGA | 1 cut(s) | 868 |
| Bsp143I | GATC | 4 cut(s) | 168, 190, 262, 454 |
| BspACI | CCGC | 3 cut(s) | 317, 395, 644 |
| BspANI | GGCC | 5 cut(s) | 38, 516, 711, 716, 731 |
| BspCNI | CTCAG | 3 cut(s) | 471, 678, 745 |
| BspEI | TCCGGA | 1 cut(s) | 868 |
| BspLI | GGNNCC | 4 cut(s) | 170, 730, 731, 867 |
| BspPI | GGATC | 2 cut(s) | 163, 176 |
| BspQI | GCTCTTC | 1 cut(s) | 116 |
| BsrFI | RCCGGY | 1 cut(s) | 319 |
| BsrI | ACTGG | 1 cut(s) | 358 |
| BssAI | RCCGGY | 1 cut(s) | 319 |
| BssECI | CCNNGG | 1 cut(s) | 290 |
| BssMI | GATC | 4 cut(s) | 168, 190, 262, 454 |
| BssSI | CACGAG | 1 cut(s) | 884 |
| Bst2BI | CACGAG | 1 cut(s) | 884 |
| Bst2UI | CCWGG | 1 cut(s) | 713 |
| Bst4CI | ACNGT | 2 cut(s) | 208, 593 |
| Bst6I | CTCTTC | 3 cut(s) | 23, 116, 263 |
| BstC8I | GCNNGC | 2 cut(s) | 321, 393 |
| BstDEI | CTNAG | 5 cut(s) | 174, 364, 458, 686, 753 |
| BstDSI | CCRYGG | 1 cut(s) | 290 |
| BstF5I | GGATG | 2 cut(s) | 13, 184 |
| BstKTI | GATC | 4 cut(s) | 171, 193, 265, 457 |
| BstMBI | GATC | 4 cut(s) | 168, 190, 262, 454 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 641, 722, 728 |
| BstNI | CCWGG | 1 cut(s) | 713 |
| BstSCI | CCNGG | 2 cut(s) | 213, 711 |
| BstSLI | GKGCMC | 1 cut(s) | 733 |
| BstV1I | GCAGC | 2 cut(s) | 300, 734 |
| BstX2I | RGATCY | 3 cut(s) | 168, 262, 454 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 501, 725 |
| BstYI | RGATCY | 3 cut(s) | 168, 262, 454 |
| Bsu36I | CCTNAGG | 1 cut(s) | 174 |
| BsuRI | GGCC | 5 cut(s) | 38, 516, 711, 716, 731 |
| BtgI | CCRYGG | 1 cut(s) | 290 |
| BtsCI | GGATG | 2 cut(s) | 13, 184 |
| BtsIMutI | CAGTG | 2 cut(s) | 49, 351 |
| Cac8I | GCNNGC | 2 cut(s) | 321, 393 |
| Cfr10I | RCCGGY | 1 cut(s) | 319 |
| Cfr13I | GGNCC | 4 cut(s) | 715, 729, 730, 866 |
| CviAII | CATG | 2 cut(s) | 67, 97 |
| DdeI | CTNAG | 5 cut(s) | 174, 364, 458, 686, 753 |
| DpnI | GATC | 4 cut(s) | 170, 192, 264, 456 |
| DpnII | GATC | 4 cut(s) | 168, 190, 262, 454 |
| EaeI | YGGCCR | 2 cut(s) | 36, 514 |
| Eam1104I | CTCTTC | 3 cut(s) | 23, 116, 263 |
| EarI | CTCTTC | 3 cut(s) | 23, 116, 263 |
| Ecl136II | GAGCTC | 1 cut(s) | 109 |
| Eco24I | GRGCYC | 3 cut(s) | 111, 186, 733 |
| Eco47I | GGWCC | 1 cut(s) | 866 |
| Eco53kI | GAGCTC | 1 cut(s) | 109 |
| Eco57I | CTGAAG | 1 cut(s) | 287 |
| Eco81I | CCTNAGG | 1 cut(s) | 174 |
| Eco88I | CYCGRG | 1 cut(s) | 399 |
| EcoICRI | GAGCTC | 1 cut(s) | 109 |
| EcoO109I | RGGNCCY | 1 cut(s) | 729 |
| EcoRI | GAATTC | 2 cut(s) | 234, 670 |
| EcoRII | CCWGG | 1 cut(s) | 711 |
| EcoT38I | GRGCYC | 3 cut(s) | 111, 186, 733 |
| FaeI | CATG | 2 cut(s) | 70, 100 |
| FaiI | YATR | 8 cut(s) | 68, 98, 120, 228, 452, 534, 579, 641 |
| FaqI | GGGAC | 1 cut(s) | 823 |
| FatI | CATG | 2 cut(s) | 66, 96 |
| FauI | CCCGC | 1 cut(s) | 637 |
| Fnu4HI | GCNGC | 4 cut(s) | 314, 317, 396, 723 |
| FokI | GGATG | 2 cut(s) | 20, 191 |
| FriOI | GRGCYC | 3 cut(s) | 111, 186, 733 |
| Fsp4HI | GCNGC | 4 cut(s) | 314, 317, 396, 723 |
| FspBI | CTAG | 2 cut(s) | 143, 704 |
| GluI | GCNGC | 4 cut(s) | 314, 317, 396, 723 |
| GsaI | CCCAGC | 1 cut(s) | 729 |
| HaeIII | GGCC | 5 cut(s) | 38, 516, 711, 716, 731 |
| HapII | CCGG | 3 cut(s) | 214, 320, 869 |
| Hin1II | CATG | 2 cut(s) | 70, 100 |
| HinfI | GANTC | 4 cut(s) | 160, 688, 763, 820 |
| HpaII | CCGG | 3 cut(s) | 214, 320, 869 |
| HphI | GGTGA | 3 cut(s) | 116, 220, 493 |
| Hpy166II | GTNNAC | 2 cut(s) | 243, 294 |
| Hpy188I | TCNGA | 7 cut(s) | 195, 267, 491, 508, 597, 620, 754 |
| Hpy188III | TCNNGA | 3 cut(s) | 84, 869, 884 |
| Hpy8I | GTNNAC | 2 cut(s) | 243, 294 |
| HpyAV | CCTTC | 2 cut(s) | 551, 701 |
| HpyCH4III | ACNGT | 2 cut(s) | 208, 593 |
| HpyCH4IV | ACGT | 2 cut(s) | 245, 358 |
| HpyCH4V | TGCA | 1 cut(s) | 391 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 641, 722, 728 |
| HpyF3I | CTNAG | 5 cut(s) | 174, 364, 458, 686, 753 |
| HpySE526I | ACGT | 2 cut(s) | 245, 358 |
| Hsp92II | CATG | 2 cut(s) | 70, 100 |
| Kpn2I | TCCGGA | 1 cut(s) | 868 |
| KroI | GCCGGC | 1 cut(s) | 319 |
| KroNI | GCCGGC | 1 cut(s) | 321 |
| Kzo9I | GATC | 4 cut(s) | 168, 190, 262, 454 |
| LguI | GCTCTTC | 1 cut(s) | 116 |
| Lsp1109I | GCAGC | 2 cut(s) | 300, 734 |
| MaeI | CTAG | 2 cut(s) | 143, 704 |
| MaeII | ACGT | 2 cut(s) | 245, 358 |
| MaeIII | GTNAC | 1 cut(s) | 410 |
| MalI | GATC | 4 cut(s) | 170, 192, 264, 456 |
| MboI | GATC | 4 cut(s) | 168, 190, 262, 454 |
| MboII | GAAGA | 6 cut(s) | 40, 99, 103, 169, 280, 826 |
| MfeI | CAATTG | 1 cut(s) | 375 |
| MflI | RGATCY | 3 cut(s) | 168, 262, 454 |
| MhlI | GDGCHC | 4 cut(s) | 111, 186, 733, 847 |
| MlsI | TGGCCA | 1 cut(s) | 38 |
| MluCI | AATT | 6 cut(s) | 20, 234, 375, 670, 694, 748 |
| MluNI | TGGCCA | 1 cut(s) | 38 |
| MlyI | GAGTC | 2 cut(s) | 697, 829 |
| MmeI | TCCRAC | 3 cut(s) | 114, 486, 514 |
| Mox20I | TGGCCA | 1 cut(s) | 38 |
| MreI | CGCCGGCG | 1 cut(s) | 319 |
| MroI | TCCGGA | 1 cut(s) | 868 |
| MroNI | GCCGGC | 1 cut(s) | 319 |
| MroXI | GAANNNNTTC | 1 cut(s) | 540 |
| MscI | TGGCCA | 1 cut(s) | 38 |
| MseI | TTAA | 2 cut(s) | 693, 825 |
| MslI | CAYNNNNRTG | 2 cut(s) | 499, 582 |
| Msp20I | TGGCCA | 1 cut(s) | 38 |
| MspA1I | CMGCKG | 1 cut(s) | 725 |
| MspI | CCGG | 3 cut(s) | 214, 320, 869 |
| MspR9I | CCNGG | 2 cut(s) | 215, 713 |
| MunI | CAATTG | 1 cut(s) | 375 |
| MvaI | CCWGG | 1 cut(s) | 713 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 641, 722, 728 |
| NaeI | GCCGGC | 1 cut(s) | 321 |
| NciI | CCSGG | 1 cut(s) | 215 |
| NdeII | GATC | 4 cut(s) | 168, 190, 262, 454 |
| NgoMIV | GCCGGC | 1 cut(s) | 319 |
| NlaIII | CATG | 2 cut(s) | 70, 100 |
| NlaIV | GGNNCC | 4 cut(s) | 170, 730, 731, 867 |
| PciSI | GCTCTTC | 1 cut(s) | 116 |
| PdiI | GCCGGC | 1 cut(s) | 321 |
| PdmI | GAANNNNTTC | 1 cut(s) | 540 |
| PfeI | GAWTC | 2 cut(s) | 160, 763 |
| PkrI | GCNGC | 4 cut(s) | 315, 318, 397, 724 |
| PleI | GAGTC | 2 cut(s) | 696, 828 |
| PpsI | GAGTC | 2 cut(s) | 696, 828 |
| Psp124BI | GAGCTC | 1 cut(s) | 111 |
| Psp6I | CCWGG | 1 cut(s) | 711 |
| PspFI | CCCAGC | 1 cut(s) | 725 |
| PspGI | CCWGG | 1 cut(s) | 711 |
| PspN4I | GGNNCC | 4 cut(s) | 170, 730, 731, 867 |
| PspOMI | GGGCCC | 1 cut(s) | 729 |
| PspPI | GGNCC | 4 cut(s) | 715, 729, 730, 866 |
| PsuI | RGATCY | 3 cut(s) | 168, 262, 454 |
| PvuII | CAGCTG | 1 cut(s) | 725 |
| RseI | CAYNNNNRTG | 2 cut(s) | 499, 582 |
| SacI | GAGCTC | 1 cut(s) | 111 |
| SapI | GCTCTTC | 1 cut(s) | 116 |
| SaqAI | TTAA | 2 cut(s) | 693, 825 |
| SatI | GCNGC | 4 cut(s) | 314, 317, 396, 723 |
| Sau3AI | GATC | 4 cut(s) | 168, 190, 262, 454 |
| Sau96I | GGNCC | 4 cut(s) | 715, 729, 730, 866 |
| SchI | GAGTC | 2 cut(s) | 697, 829 |
| ScrFI | CCNGG | 2 cut(s) | 215, 713 |
| SduI | GDGCHC | 4 cut(s) | 111, 186, 733, 847 |
| SgrAI | CRCCGGYG | 1 cut(s) | 319 |
| SinI | GGWCC | 1 cut(s) | 866 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 499, 582 |
| SmlI | CTYRAG | 1 cut(s) | 835 |
| SmoI | CTYRAG | 1 cut(s) | 835 |
| Sse9I | AATT | 6 cut(s) | 20, 234, 375, 670, 694, 748 |
| SsiI | CCGC | 3 cut(s) | 317, 395, 644 |
| SspI | AATATT | 1 cut(s) | 652 |
| SspMI | CTAG | 2 cut(s) | 143, 704 |
| SstI | GAGCTC | 1 cut(s) | 111 |
| StyD4I | CCNGG | 2 cut(s) | 213, 711 |
| TaaI | ACNGT | 2 cut(s) | 208, 593 |
| TaiI | ACGT | 2 cut(s) | 248, 361 |
| TaqI | TCGA | 2 cut(s) | 85, 345 |
| TasI | AATT | 6 cut(s) | 20, 234, 375, 670, 694, 748 |
| TauI | GCSGC | 2 cut(s) | 319, 398 |
| TfiI | GAWTC | 2 cut(s) | 160, 763 |
| Tru1I | TTAA | 2 cut(s) | 693, 825 |
| Tru9I | TTAA | 2 cut(s) | 693, 825 |
| TscAI | CASTG | 2 cut(s) | 49, 358 |
| TseI | GCWGC | 2 cut(s) | 313, 722 |
| TspDTI | ATGAA | 4 cut(s) | 85, 170, 549, 683 |
| TspGWI | ACGGA | 3 cut(s) | 65, 279, 847 |
| TspRI | CASTG | 2 cut(s) | 49, 358 |
| VpaK11BI | GGWCC | 1 cut(s) | 866 |
| XapI | RAATTY | 3 cut(s) | 20, 234, 670 |
| XmnI | GAANNNNTTC | 1 cut(s) | 540 |
| XspI | CTAG | 2 cut(s) | 143, 704 |