Rmu_sc0008002.1_g000009

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008002.1
OG0000022
Physical Location & Seq
Reverse (-)
26219 .. 27815
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008002.1_g000009.1.cds

Sequence Viewer

Length: 1275 bp
atggaggaggttgttggaagttttgctaggaagcttgcgttgtcagatactgaggtggaggtggttattccttcgatgatggtggatgaggggccacagaggtggttcttggtttgtgaactgctaacggcgaagtcgtatagggtggagttttttacaagtacaatgaaaagcttgtggatcccaaagtttgatccgccggatagatctcgaattacggcaacacagttaggcaggagtaatcaagtggtgttctcgtttcaaaatgaagcatatctaaagtgggttgtgaaaggctgcccatggtccttcaagaaagccttggtagcagttgcggtaacagatggtcgtgagaatccagagaaggaggcaattggtcagttcgtaagagcagggaaaggtagtaaggtgagttgcttgggggaattcctgagaatcagggttgggattgatgtggaagcacctctgaaaaaatgggtcaactttaggccagcaggttggccagaaagccagagatttgaactagagtatgagcgtcttcacatttttgcttcttttgtgagaaaggaggcttggctgcttgagcagtggaagttggaacgacagggcttggggaacagcggtggtggctgtaggttgggattgaacacaaggaggaaaacaagctggattatgacagcacctgatcttccggtttccggccttactaggagtagggaagaaagggatgcaggtgctcttgtaacactaacagaagacggtacggcaatggaagtggacaaaccaagtgatttggaaactgcagtaatggagtattcaattaggaaatcttcgagcaagaatgacgttgttgatttcactaaactagcagaagctgatcaagatccatgtttggcgttattgccttctgggtctaagattgataaggaaggattttcaaatggcaaagcgcaagaagcggcaaaagttgacctggaggtccctttaagtgggaatgggctagctgaagcaaaggatgggccaagcccaaaaatttacagaaagcatgggctagctgtggatttgcatcaaaattacaaggatcagaaggcccggtgcttctctaggctttttaaaaggactcgagattcaggttcacagcaggataggaaagtgaagaggggttatgtattgcgtaaggttgttgtggtgtatacttctccaaagaagagtcaagggcgtactcttgaacgtccctccgtgatgggttcggccttgacccatcacaagtcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000313 GO:0000462 GO:0000956 GO:0002164 GO:0002181 GO:0002182 GO:0002376 GO:0002520 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006414 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009790 GO:0009791 GO:0009792 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0015935 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030097 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0035166 GO:0035167 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043009 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043253 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048513 GO:0048519 GO:0048534 GO:0048542 GO:0048569 GO:0048731 GO:0048732 GO:0048856 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Ribosomal_S8e

Protein Analysis

424

Amino Acids

47.55

Weight (kDa)

9.39

Isoelectric Point (pI)

29.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 722
AasI GACNNNNNNGTC 1 cut(s) 977
Acc36I ACCTGC 2 cut(s) 485, 722
AccI GTMKAC 1 cut(s) 1193
AciI CCGC 4 cut(s) 197, 335, 621, 959
AclWI GGATC 5 cut(s) 175, 188, 188, 878, 1089
AcoI YGGCCR 1 cut(s) 500
AcsI RAATTY 2 cut(s) 425, 1032
AcuI CTGAAG 1 cut(s) 1026
AfaI GTAC 3 cut(s) 163, 763, 1222
AfiI CCNNNNNNNGG 2 cut(s) 698, 989
AgsI TTSAA 7 cut(s) 263, 313, 521, 646, 819, 939, 1229
AjnI CCWGG 1 cut(s) 972
AjuI GAANNNNNNNTTGG 2 cut(s) 556, 588
AleI CACNNNNGTG 1 cut(s) 100
AluBI AGCT 6 cut(s) 34, 174, 666, 875, 1004, 1055
AluI AGCT 6 cut(s) 34, 174, 666, 875, 1004, 1055
Alw21I GWGCWC 1 cut(s) 739
AlwI GGATC 5 cut(s) 175, 188, 188, 878, 1089
AlwNI CAGNNNCTG 3 cut(s) 50, 683, 875
Ama87I CYCGRG 1 cut(s) 1122
AoxI GGCC 7 cut(s) 92, 488, 500, 700, 1019, 1089, 1251
ApeKI GCWGC 2 cut(s) 297, 577
ApoI RAATTY 2 cut(s) 425, 1032
AspLEI GCGC 1 cut(s) 952
AspS9I GGNCC 5 cut(s) 92, 306, 979, 1019, 1090
AsuC2I CCSGG 1 cut(s) 1093
AsuHPI GGTGA 1 cut(s) 421
AsuNHI GCTAGC 2 cut(s) 1000, 1051
AvaI CYCGRG 1 cut(s) 1122
AvaII GGWCC 2 cut(s) 306, 979
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BalI TGGCCA 1 cut(s) 502
BamHI GGATCC 1 cut(s) 180
BbsI GAAGAC 2 cut(s) 530, 762
Bbv12I GWGCWC 1 cut(s) 739
BbvI GCAGC 2 cut(s) 284, 564
BccI CCATC 5 cut(s) 73, 338, 1010, 1237, 1269
BceAI ACGGC 3 cut(s) 144, 234, 780
BciT130I CCWGG 1 cut(s) 974
BclI TGATCA 1 cut(s) 877
BcnI CCSGG 1 cut(s) 1093
BfaI CTAG 7 cut(s) 27, 524, 708, 866, 1001, 1052, 1104
BfmI CTRYAG 2 cut(s) 631, 801
BfuAI ACCTGC 2 cut(s) 485, 722
BglII AGATCT 1 cut(s) 206
BisI GCNGC 3 cut(s) 298, 578, 960
BlsI GCNGC 3 cut(s) 299, 579, 961
Bme1390I CCNGG 2 cut(s) 974, 1093
Bme18I GGWCC 2 cut(s) 306, 979
BmeT110I CYCGRG 1 cut(s) 1122
BmgT120I GGNCC 5 cut(s) 92, 306, 979, 1019, 1090
BmiI GGNNCC 3 cut(s) 93, 182, 981
BmrFI CCNGG 2 cut(s) 974, 1093
BmsI GCATC 2 cut(s) 718, 1075
BmtI GCTAGC 2 cut(s) 1004, 1055
BpiI GAAGAC 2 cut(s) 530, 762
BpmI CTGGAG 1 cut(s) 995
BpuEI CTTGAG 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 1093
BsaBI GATNNNNATC 2 cut(s) 882, 1065
BsaJI CCNNGG 2 cut(s) 302, 321
BsaWI WCCGGW 1 cut(s) 691
Bsc4I CCNNNNNNNGG 2 cut(s) 698, 989
Bse3DI GCAATG 1 cut(s) 774
Bse8I GATNNNNATC 2 cut(s) 882, 1065
BseBI CCWGG 1 cut(s) 974
BseDI CCNNGG 2 cut(s) 302, 321
BseGI GGATG 3 cut(s) 91, 733, 1021
BseJI GATNNNNATC 2 cut(s) 882, 1065
BseLI CCNNNNNNNGG 2 cut(s) 698, 989
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 2 cut(s) 42, 422
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 284, 564
BshFI GGCC 7 cut(s) 94, 490, 502, 702, 1021, 1091, 1253
BsiHKAI GWGCWC 1 cut(s) 739
BsiHKCI CYCGRG 1 cut(s) 1122
BsiSI CCGG 4 cut(s) 200, 692, 699, 1093
BslFI GGGAC 2 cut(s) 965, 1218
BslI CCNNNNNNNGG 2 cut(s) 698, 989
BsmFI GGGAC 2 cut(s) 965, 1218
BsnI GGCC 7 cut(s) 94, 490, 502, 702, 1021, 1091, 1253
BsoBI CYCGRG 1 cut(s) 1122
Bsp1286I GDGCHC 1 cut(s) 739
Bsp143I GATC 7 cut(s) 180, 193, 206, 685, 877, 883, 1081
Bsp19I CCATGG 1 cut(s) 302
BspACI CCGC 4 cut(s) 197, 335, 621, 959
BspANI GGCC 7 cut(s) 94, 490, 502, 702, 1021, 1091, 1253
BspCNI CTCAG 2 cut(s) 43, 423
BspHI TCATGA 1 cut(s) 1271
BspLI GGNNCC 3 cut(s) 93, 182, 981
BspMAI CTGCAG 1 cut(s) 805
BspMI ACCTGC 2 cut(s) 485, 722
BspOI GCTAGC 2 cut(s) 1004, 1055
BspPI GGATC 5 cut(s) 175, 188, 188, 878, 1089
BsrDI GCAATG 1 cut(s) 774
BssECI CCNNGG 2 cut(s) 302, 321
BssMI GATC 7 cut(s) 180, 193, 206, 685, 877, 883, 1081
BssNAI GTATAC 1 cut(s) 1194
BssT1I CCWWGG 2 cut(s) 302, 321
Bst1107I GTATAC 1 cut(s) 1194
Bst2UI CCWGG 1 cut(s) 974
Bst4CI ACNGT 2 cut(s) 228, 761
Bst6I CTCTTC 2 cut(s) 1151, 1202
BstC8I GCNNGC 4 cut(s) 36, 492, 1002, 1053
BstDEI CTNAG 3 cut(s) 51, 431, 915
BstDSI CCRYGG 1 cut(s) 302
BstF5I GGATG 3 cut(s) 91, 733, 1021
BstHHI GCGC 1 cut(s) 952
BstKTI GATC 7 cut(s) 183, 196, 209, 688, 880, 886, 1084
BstMBI GATC 7 cut(s) 180, 193, 206, 685, 877, 883, 1081
BstMWI GCNNNNNNNGC 4 cut(s) 326, 583, 627, 956
BstNI CCWGG 1 cut(s) 974
BstSCI CCNGG 2 cut(s) 972, 1091
BstSFI CTRYAG 2 cut(s) 631, 801
BstV1I GCAGC 2 cut(s) 284, 564
BstV2I GAAGAC 2 cut(s) 530, 762
BstX2I RGATCY 3 cut(s) 180, 206, 883
BstXI CCANNNNNNTGG 2 cut(s) 102, 498
BstYI RGATCY 3 cut(s) 180, 206, 883
BstZ17I GTATAC 1 cut(s) 1194
BsuRI GGCC 7 cut(s) 94, 490, 502, 702, 1021, 1091, 1253
BtgI CCRYGG 1 cut(s) 302
BtsCI GGATG 3 cut(s) 91, 733, 1021
BtsI GCAGTG 1 cut(s) 593
BtsIMutI CAGTG 1 cut(s) 593
BveI ACCTGC 2 cut(s) 485, 722
Cac8I GCNNGC 4 cut(s) 36, 492, 1002, 1053
CaiI CAGNNNCTG 3 cut(s) 50, 683, 875
CciI TCATGA 1 cut(s) 1271
CfoI GCGC 1 cut(s) 952
Cfr13I GGNCC 5 cut(s) 92, 306, 979, 1019, 1090
CseI GACGC 1 cut(s) 524
Csp6I GTAC 3 cut(s) 162, 762, 1221
CspCI CAANNNNNGTGG 2 cut(s) 756, 791
CviAII CATG 4 cut(s) 303, 888, 1046, 1272
CviQI GTAC 3 cut(s) 162, 762, 1221
DdeI CTNAG 3 cut(s) 51, 431, 915
DpnI GATC 7 cut(s) 182, 195, 208, 687, 879, 885, 1083
DpnII GATC 7 cut(s) 180, 193, 206, 685, 877, 883, 1081
DraI TTTAAA 1 cut(s) 1114
DrdI GACNNNNNNGTC 1 cut(s) 977
DseDI GACNNNNNNGTC 1 cut(s) 977
EaeI YGGCCR 1 cut(s) 500
Eam1104I CTCTTC 2 cut(s) 1151, 1202
EarI CTCTTC 2 cut(s) 1151, 1202
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 2 cut(s) 302, 321
Eco47I GGWCC 2 cut(s) 306, 979
Eco57I CTGAAG 1 cut(s) 1026
Eco88I CYCGRG 1 cut(s) 1122
EcoO109I RGGNCCY 1 cut(s) 979
EcoRI GAATTC 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 972
EcoT14I CCWWGG 2 cut(s) 302, 321
ErhI CCWWGG 2 cut(s) 302, 321
FaeI CATG 4 cut(s) 306, 891, 1049, 1275
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FaqI GGGAC 2 cut(s) 965, 1218
FatI CATG 4 cut(s) 302, 887, 1045, 1271
FbaI TGATCA 1 cut(s) 877
FblI GTMKAC 1 cut(s) 1193
Fnu4HI GCNGC 3 cut(s) 298, 578, 960
FokI GGATG 3 cut(s) 98, 740, 1028
Fsp4HI GCNGC 3 cut(s) 298, 578, 960
FspBI CTAG 7 cut(s) 27, 524, 708, 866, 1001, 1052, 1104
GlaI GCGC 1 cut(s) 951
GluI GCNGC 3 cut(s) 298, 578, 960
GsuI CTGGAG 1 cut(s) 995
HaeIII GGCC 7 cut(s) 94, 490, 502, 702, 1021, 1091, 1253
HapII CCGG 4 cut(s) 200, 692, 699, 1093
HgaI GACGC 1 cut(s) 524
HhaI GCGC 1 cut(s) 952
Hin1II CATG 4 cut(s) 306, 891, 1049, 1275
Hin6I GCGC 1 cut(s) 950
HinP1I GCGC 1 cut(s) 950
HincII GTYRAC 2 cut(s) 481, 970
HindII GTYRAC 2 cut(s) 481, 970
HindIII AAGCTT 2 cut(s) 32, 172
HinfI GANTC 5 cut(s) 355, 435, 1120, 1127, 1210
HpaII CCGG 4 cut(s) 200, 692, 699, 1093
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 6 cut(s) 119, 481, 778, 970, 1136, 1194
Hpy188I TCNGA 3 cut(s) 46, 468, 1086
Hpy188III TCNNGA 9 cut(s) 210, 313, 350, 359, 430, 881, 1124, 1226, 1272
Hpy8I GTNNAC 6 cut(s) 119, 481, 778, 970, 1136, 1194
HpyAV CCTTC 6 cut(s) 81, 319, 358, 915, 923, 1081
HpyCH4III ACNGT 2 cut(s) 228, 761
HpyCH4IV ACGT 2 cut(s) 846, 1231
HpyCH4V TGCA 3 cut(s) 731, 803, 1066
HpyF10VI GCNNNNNNNGC 4 cut(s) 326, 583, 627, 956
HpyF3I CTNAG 3 cut(s) 51, 431, 915
HpySE526I ACGT 2 cut(s) 846, 1231
Hsp92II CATG 4 cut(s) 306, 891, 1049, 1275
HspAI GCGC 1 cut(s) 950
Ksp22I TGATCA 1 cut(s) 877
Kzo9I GATC 7 cut(s) 180, 193, 206, 685, 877, 883, 1081
Lsp1109I GCAGC 2 cut(s) 284, 564
LweI GCATC 2 cut(s) 718, 1075
MaeI CTAG 7 cut(s) 27, 524, 708, 866, 1001, 1052, 1104
MaeII ACGT 2 cut(s) 846, 1231
MaeIII GTNAC 2 cut(s) 337, 742
MalI GATC 7 cut(s) 182, 195, 208, 687, 879, 885, 1083
MboI GATC 7 cut(s) 180, 193, 206, 685, 877, 883, 1081
MboII GAAGA 7 cut(s) 530, 680, 731, 767, 822, 1168, 1219
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 3 cut(s) 180, 206, 883
MhlI GDGCHC 1 cut(s) 739
MlsI TGGCCA 1 cut(s) 502
MluCI AATT 6 cut(s) 213, 372, 425, 819, 1032, 1072
MluNI TGGCCA 1 cut(s) 502
MlyI GAGTC 2 cut(s) 1114, 1219
MmeI TCCRAC 1 cut(s) 576
Mox20I TGGCCA 1 cut(s) 502
MscI TGGCCA 1 cut(s) 502
MseI TTAA 2 cut(s) 986, 1113
MslI CAYNNNNRTG 1 cut(s) 100
Msp20I TGGCCA 1 cut(s) 502
MspA1I CMGCKG 1 cut(s) 621
MspI CCGG 4 cut(s) 200, 692, 699, 1093
MspR9I CCNGG 2 cut(s) 974, 1093
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 974
MwoI GCNNNNNNNGC 4 cut(s) 326, 583, 627, 956
NciI CCSGG 1 cut(s) 1093
NcoI CCATGG 1 cut(s) 302
NdeII GATC 7 cut(s) 180, 193, 206, 685, 877, 883, 1081
NheI GCTAGC 2 cut(s) 1000, 1051
NlaIII CATG 4 cut(s) 306, 891, 1049, 1275
NlaIV GGNNCC 3 cut(s) 93, 182, 981
OliI CACNNNNGTG 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 1122
PagI TCATGA 1 cut(s) 1271
PaqCI CACCTGC 1 cut(s) 722
PcsI WCGNNNNNNNCGW 1 cut(s) 134
PfeI GAWTC 3 cut(s) 355, 435, 1127
PkrI GCNGC 3 cut(s) 299, 579, 961
PleI GAGTC 2 cut(s) 1114, 1218
PpsI GAGTC 2 cut(s) 1114, 1218
PpuMI RGGWCCY 1 cut(s) 979
Psp5II RGGWCCY 1 cut(s) 979
Psp6I CCWGG 1 cut(s) 972
PspGI CCWGG 1 cut(s) 972
PspN4I GGNNCC 3 cut(s) 93, 182, 981
PspPI GGNCC 5 cut(s) 92, 306, 979, 1019, 1090
PspPPI RGGWCCY 1 cut(s) 979
PstI CTGCAG 1 cut(s) 805
PstNI CAGNNNCTG 3 cut(s) 50, 683, 875
PsuI RGATCY 3 cut(s) 180, 206, 883
RsaI GTAC 3 cut(s) 163, 763, 1222
RsaNI GTAC 3 cut(s) 162, 762, 1221
RseI CAYNNNNRTG 1 cut(s) 100
SaqAI TTAA 2 cut(s) 986, 1113
SatI GCNGC 3 cut(s) 298, 578, 960
Sau3AI GATC 7 cut(s) 180, 193, 206, 685, 877, 883, 1081
Sau96I GGNCC 5 cut(s) 92, 306, 979, 1019, 1090
SchI GAGTC 2 cut(s) 1114, 1219
ScrFI CCNGG 2 cut(s) 974, 1093
SduI GDGCHC 1 cut(s) 739
SfaNI GCATC 2 cut(s) 718, 1075
SfcI CTRYAG 2 cut(s) 631, 801
Sfr274I CTCGAG 1 cut(s) 1122
SinI GGWCC 2 cut(s) 306, 979
SlaI CTCGAG 1 cut(s) 1122
SmiMI CAYNNNNRTG 1 cut(s) 100
SmlI CTYRAG 2 cut(s) 581, 1122
SmoI CTYRAG 2 cut(s) 581, 1122
Sse9I AATT 6 cut(s) 213, 372, 425, 819, 1032, 1072
SsiI CCGC 4 cut(s) 197, 335, 621, 959
SspMI CTAG 7 cut(s) 27, 524, 708, 866, 1001, 1052, 1104
StyD4I CCNGG 2 cut(s) 972, 1091
StyI CCWWGG 2 cut(s) 302, 321
TaaI ACNGT 2 cut(s) 228, 761
TaiI ACGT 2 cut(s) 849, 1234
TaqI TCGA 4 cut(s) 74, 211, 833, 1123
TasI AATT 6 cut(s) 213, 372, 425, 819, 1032, 1072
TatI WGTACW 1 cut(s) 161
TauI GCSGC 1 cut(s) 962
TfiI GAWTC 3 cut(s) 355, 435, 1127
Tru1I TTAA 2 cut(s) 986, 1113
Tru9I TTAA 2 cut(s) 986, 1113
TscAI CASTG 1 cut(s) 593
TseI GCWGC 2 cut(s) 297, 577
TspDTI ATGAA 2 cut(s) 182, 282
TspGWI ACGGA 1 cut(s) 1228
TspRI CASTG 1 cut(s) 593
VpaK11BI GGWCC 2 cut(s) 306, 979
XapI RAATTY 2 cut(s) 425, 1032
XhoI CTCGAG 1 cut(s) 1122
XmiI GTMKAC 1 cut(s) 1193
XspI CTAG 7 cut(s) 27, 524, 708, 866, 1001, 1052, 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.