ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 166 |
| AccII | CGCG | 1 cut(s) | 634 |
| AccIII | TCCGGA | 1 cut(s) | 234 |
| AciI | CCGC | 5 cut(s) | 166, 599, 632, 634, 700 |
| AclWI | GGATC | 5 cut(s) | 398, 411, 623, 636, 718 |
| AcsI | RAATTY | 1 cut(s) | 260 |
| AcuI | CTGAAG | 1 cut(s) | 336 |
| AdeI | CACNNNGTG | 1 cut(s) | 22 |
| AfaI | GTAC | 1 cut(s) | 60 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 392 |
| AgsI | TTSAA | 2 cut(s) | 310, 665 |
| AluBI | AGCT | 2 cut(s) | 101, 625 |
| AluI | AGCT | 2 cut(s) | 101, 625 |
| AlwI | GGATC | 5 cut(s) | 398, 411, 623, 636, 718 |
| Aor13HI | TCCGGA | 1 cut(s) | 234 |
| ApeKI | GCWGC | 2 cut(s) | 337, 622 |
| ApoI | RAATTY | 1 cut(s) | 260 |
| AspS9I | GGNCC | 2 cut(s) | 142, 382 |
| AsuC2I | CCSGG | 1 cut(s) | 408 |
| AsuHPI | GGTGA | 2 cut(s) | 8, 667 |
| AvaII | GGWCC | 2 cut(s) | 142, 382 |
| BamHI | GGATCC | 2 cut(s) | 403, 628 |
| BauI | CACGAG | 1 cut(s) | 176 |
| BbsI | GAAGAC | 3 cut(s) | 2, 292, 327 |
| BbvCI | CCTCAGC | 1 cut(s) | 572 |
| BbvI | GCAGC | 2 cut(s) | 324, 634 |
| BccI | CCATC | 5 cut(s) | 386, 394, 478, 483, 542 |
| BcnI | CCSGG | 1 cut(s) | 408 |
| BfaI | CTAG | 3 cut(s) | 98, 330, 422 |
| BfmI | CTRYAG | 1 cut(s) | 620 |
| BglII | AGATCT | 1 cut(s) | 240 |
| BisI | GCNGC | 2 cut(s) | 338, 623 |
| BlpI | GCTNAGC | 1 cut(s) | 162 |
| BlsI | GCNGC | 2 cut(s) | 339, 624 |
| Bme1390I | CCNGG | 1 cut(s) | 408 |
| Bme18I | GGWCC | 2 cut(s) | 142, 382 |
| BmgT120I | GGNCC | 2 cut(s) | 142, 382 |
| BmiI | GGNNCC | 4 cut(s) | 144, 384, 405, 630 |
| BmrFI | CCNGG | 1 cut(s) | 408 |
| BmsI | GCATC | 1 cut(s) | 237 |
| BoxI | GACNNNNGTC | 1 cut(s) | 87 |
| BpiI | GAAGAC | 3 cut(s) | 2, 292, 327 |
| BpmI | CTGGAG | 1 cut(s) | 143 |
| Bpu10I | CCTNAGC | 1 cut(s) | 572 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 162 |
| BpuEI | CTTGAG | 1 cut(s) | 577 |
| BpuMI | CCSGG | 1 cut(s) | 408 |
| BsaBI | GATNNNNATC | 1 cut(s) | 117 |
| BsaJI | CCNNGG | 4 cut(s) | 252, 350, 407, 632 |
| BsaWI | WCCGGW | 1 cut(s) | 234 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 42, 72, 544, 574 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 392 |
| Bse1I | ACTGG | 1 cut(s) | 378 |
| Bse8I | GATNNNNATC | 1 cut(s) | 117 |
| BseAI | TCCGGA | 1 cut(s) | 234 |
| BseDI | CCNNGG | 4 cut(s) | 252, 350, 407, 632 |
| BseGI | GGATG | 5 cut(s) | 115, 231, 402, 494, 553 |
| BseJI | GATNNNNATC | 1 cut(s) | 117 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 392 |
| BseMII | CTCAG | 2 cut(s) | 153, 563 |
| BseNI | ACTGG | 1 cut(s) | 378 |
| BseRI | GAGGAG | 1 cut(s) | 83 |
| BseXI | GCAGC | 2 cut(s) | 324, 634 |
| BsgI | GTGCAG | 1 cut(s) | 44 |
| Bsh1236I | CGCG | 1 cut(s) | 634 |
| BsiSI | CCGG | 2 cut(s) | 235, 407 |
| BslFI | GGGAC | 2 cut(s) | 368, 650 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 392 |
| BsmFI | GGGAC | 2 cut(s) | 368, 650 |
| Bsp13I | TCCGGA | 1 cut(s) | 234 |
| Bsp143I | GATC | 6 cut(s) | 118, 240, 267, 403, 628, 710 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 162 |
| BspACI | CCGC | 5 cut(s) | 166, 599, 632, 634, 700 |
| BspCNI | CTCAG | 2 cut(s) | 154, 564 |
| BspEI | TCCGGA | 1 cut(s) | 234 |
| BspFNI | CGCG | 1 cut(s) | 634 |
| BspLI | GGNNCC | 4 cut(s) | 144, 384, 405, 630 |
| BspMAI | CTGCAG | 1 cut(s) | 624 |
| BspPI | GGATC | 5 cut(s) | 398, 411, 623, 636, 718 |
| BsrBI | CCGCTC | 1 cut(s) | 166 |
| BsrI | ACTGG | 1 cut(s) | 378 |
| BssECI | CCNNGG | 4 cut(s) | 252, 350, 407, 632 |
| BssMI | GATC | 6 cut(s) | 118, 240, 267, 403, 628, 710 |
| BssSI | CACGAG | 1 cut(s) | 176 |
| BssT1I | CCWWGG | 2 cut(s) | 252, 350 |
| Bst2BI | CACGAG | 1 cut(s) | 176 |
| Bst4CI | ACNGT | 1 cut(s) | 136 |
| BstDEI | CTNAG | 3 cut(s) | 162, 572, 647 |
| BstDSI | CCRYGG | 1 cut(s) | 632 |
| BstF5I | GGATG | 5 cut(s) | 115, 231, 402, 494, 553 |
| BstFNI | CGCG | 1 cut(s) | 634 |
| BstKTI | GATC | 6 cut(s) | 121, 243, 270, 406, 631, 713 |
| BstMBI | GATC | 6 cut(s) | 118, 240, 267, 403, 628, 710 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 172, 631 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 87 |
| BstSCI | CCNGG | 1 cut(s) | 406 |
| BstSFI | CTRYAG | 1 cut(s) | 620 |
| BstUI | CGCG | 1 cut(s) | 634 |
| BstV1I | GCAGC | 2 cut(s) | 324, 634 |
| BstV2I | GAAGAC | 3 cut(s) | 2, 292, 327 |
| BstX2I | RGATCY | 3 cut(s) | 240, 403, 628 |
| BstYI | RGATCY | 3 cut(s) | 240, 403, 628 |
| BtgI | CCRYGG | 1 cut(s) | 632 |
| BtsCI | GGATG | 5 cut(s) | 115, 231, 402, 494, 553 |
| Cfr13I | GGNCC | 2 cut(s) | 142, 382 |
| Cfr42I | CCGCGG | 1 cut(s) | 635 |
| CseI | GACGC | 1 cut(s) | 234 |
| Csp6I | GTAC | 1 cut(s) | 59 |
| CviAII | CATG | 1 cut(s) | 714 |
| CviJI | RGCY | 6 cut(s) | 101, 161, 175, 348, 589, 625 |
| CviKI_1 | RGCY | 6 cut(s) | 101, 161, 175, 348, 589, 625 |
| CviQI | GTAC | 1 cut(s) | 59 |
| DdeI | CTNAG | 3 cut(s) | 162, 572, 647 |
| DpnI | GATC | 6 cut(s) | 120, 242, 269, 405, 630, 712 |
| DpnII | GATC | 6 cut(s) | 118, 240, 267, 403, 628, 710 |
| DraIII | CACNNNGTG | 1 cut(s) | 22 |
| Eco130I | CCWWGG | 2 cut(s) | 252, 350 |
| Eco47I | GGWCC | 2 cut(s) | 142, 382 |
| Eco57I | CTGAAG | 1 cut(s) | 336 |
| EcoO109I | RGGNCCY | 1 cut(s) | 142 |
| EcoT14I | CCWWGG | 2 cut(s) | 252, 350 |
| ErhI | CCWWGG | 2 cut(s) | 252, 350 |
| FaeI | CATG | 1 cut(s) | 717 |
| FaiI | YATR | 5 cut(s) | 104, 326, 360, 669, 715 |
| FaqI | GGGAC | 2 cut(s) | 368, 650 |
| FatI | CATG | 1 cut(s) | 713 |
| FauI | CCCGC | 1 cut(s) | 627 |
| Fnu4HI | GCNGC | 2 cut(s) | 338, 623 |
| FokI | GGATG | 5 cut(s) | 122, 218, 409, 501, 560 |
| Fsp4HI | GCNGC | 2 cut(s) | 338, 623 |
| FspBI | CTAG | 3 cut(s) | 98, 330, 422 |
| GluI | GCNGC | 2 cut(s) | 338, 623 |
| GsuI | CTGGAG | 1 cut(s) | 143 |
| HapII | CCGG | 2 cut(s) | 235, 407 |
| HgaI | GACGC | 1 cut(s) | 234 |
| Hin1II | CATG | 1 cut(s) | 717 |
| HincII | GTYRAC | 3 cut(s) | 192, 208, 249 |
| HindII | GTYRAC | 3 cut(s) | 192, 208, 249 |
| HinfI | GANTC | 2 cut(s) | 215, 516 |
| HpaII | CCGG | 2 cut(s) | 235, 407 |
| HphI | GGTGA | 2 cut(s) | 8, 667 |
| Hpy166II | GTNNAC | 4 cut(s) | 79, 192, 208, 249 |
| Hpy188I | TCNGA | 3 cut(s) | 224, 289, 316 |
| Hpy188III | TCNNGA | 4 cut(s) | 122, 235, 431, 439 |
| Hpy8I | GTNNAC | 4 cut(s) | 79, 192, 208, 249 |
| Hpy99I | CGWCG | 2 cut(s) | 96, 215 |
| HpyAV | CCTTC | 3 cut(s) | 178, 196, 316 |
| HpyCH4III | ACNGT | 1 cut(s) | 136 |
| HpyCH4IV | ACGT | 1 cut(s) | 210 |
| HpyCH4V | TGCA | 4 cut(s) | 25, 197, 340, 622 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 172, 631 |
| HpyF3I | CTNAG | 3 cut(s) | 162, 572, 647 |
| HpySE526I | ACGT | 1 cut(s) | 210 |
| Hsp92II | CATG | 1 cut(s) | 717 |
| Kpn2I | TCCGGA | 1 cut(s) | 234 |
| KspI | CCGCGG | 1 cut(s) | 635 |
| Kzo9I | GATC | 6 cut(s) | 118, 240, 267, 403, 628, 710 |
| Lsp1109I | GCAGC | 2 cut(s) | 324, 634 |
| LweI | GCATC | 1 cut(s) | 237 |
| MaeI | CTAG | 3 cut(s) | 98, 330, 422 |
| MaeII | ACGT | 1 cut(s) | 210 |
| MaeIII | GTNAC | 1 cut(s) | 503 |
| MalI | GATC | 6 cut(s) | 120, 242, 269, 405, 630, 712 |
| MbiI | CCGCTC | 1 cut(s) | 166 |
| MboI | GATC | 6 cut(s) | 118, 240, 267, 403, 628, 710 |
| MboII | GAAGA | 7 cut(s) | 5, 250, 292, 329, 332, 493, 505 |
| MflI | RGATCY | 3 cut(s) | 240, 403, 628 |
| MluCI | AATT | 1 cut(s) | 260 |
| MroI | TCCGGA | 1 cut(s) | 234 |
| MseI | TTAA | 3 cut(s) | 450, 521, 614 |
| MspA1I | CMGCKG | 2 cut(s) | 625, 634 |
| MspI | CCGG | 2 cut(s) | 235, 407 |
| MspR9I | CCNGG | 1 cut(s) | 408 |
| MvnI | CGCG | 1 cut(s) | 634 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 172, 631 |
| NciI | CCSGG | 1 cut(s) | 408 |
| NdeII | GATC | 6 cut(s) | 118, 240, 267, 403, 628, 710 |
| NlaIII | CATG | 1 cut(s) | 717 |
| NlaIV | GGNNCC | 4 cut(s) | 144, 384, 405, 630 |
| PfeI | GAWTC | 2 cut(s) | 215, 516 |
| PkrI | GCNGC | 2 cut(s) | 339, 624 |
| PpuMI | RGGWCCY | 1 cut(s) | 142 |
| PshAI | GACNNNNGTC | 1 cut(s) | 87 |
| Psp5II | RGGWCCY | 1 cut(s) | 142 |
| PspN4I | GGNNCC | 4 cut(s) | 144, 384, 405, 630 |
| PspPI | GGNCC | 2 cut(s) | 142, 382 |
| PspPPI | RGGWCCY | 1 cut(s) | 142 |
| PstI | CTGCAG | 1 cut(s) | 624 |
| PsuI | RGATCY | 3 cut(s) | 240, 403, 628 |
| PvuII | CAGCTG | 1 cut(s) | 625 |
| RsaI | GTAC | 1 cut(s) | 60 |
| RsaNI | GTAC | 1 cut(s) | 59 |
| SacII | CCGCGG | 1 cut(s) | 635 |
| SaqAI | TTAA | 3 cut(s) | 450, 521, 614 |
| SatI | GCNGC | 2 cut(s) | 338, 623 |
| Sau3AI | GATC | 6 cut(s) | 118, 240, 267, 403, 628, 710 |
| Sau96I | GGNCC | 2 cut(s) | 142, 382 |
| ScrFI | CCNGG | 1 cut(s) | 408 |
| SfaNI | GCATC | 1 cut(s) | 237 |
| SfcI | CTRYAG | 1 cut(s) | 620 |
| Sfr303I | CCGCGG | 1 cut(s) | 635 |
| SgrBI | CCGCGG | 1 cut(s) | 635 |
| SinI | GGWCC | 2 cut(s) | 142, 382 |
| SmlI | CTYRAG | 1 cut(s) | 592 |
| SmoI | CTYRAG | 1 cut(s) | 592 |
| Sse9I | AATT | 1 cut(s) | 260 |
| SsiI | CCGC | 5 cut(s) | 166, 599, 632, 634, 700 |
| SspMI | CTAG | 3 cut(s) | 98, 330, 422 |
| StyD4I | CCNGG | 1 cut(s) | 406 |
| StyI | CCWWGG | 2 cut(s) | 252, 350 |
| TaaI | ACNGT | 1 cut(s) | 136 |
| TaiI | ACGT | 1 cut(s) | 213 |
| TaqI | TCGA | 3 cut(s) | 45, 213, 266 |
| TasI | AATT | 1 cut(s) | 260 |
| TfiI | GAWTC | 2 cut(s) | 215, 516 |
| Tru1I | TTAA | 3 cut(s) | 450, 521, 614 |
| Tru9I | TTAA | 3 cut(s) | 450, 521, 614 |
| TseI | GCWGC | 2 cut(s) | 337, 622 |
| TspDTI | ATGAA | 1 cut(s) | 684 |
| TspGWI | ACGGA | 2 cut(s) | 491, 619 |
| VpaK11BI | GGWCC | 2 cut(s) | 142, 382 |
| XapI | RAATTY | 1 cut(s) | 260 |
| XspI | CTAG | 3 cut(s) | 98, 330, 422 |