ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 148 |
| AciI | CCGC | 6 cut(s) | 30, 222, 282, 608, 768, 781 |
| AclWI | GGATC | 4 cut(s) | 469, 714, 820, 833 |
| AcoI | YGGCCR | 1 cut(s) | 359 |
| AcsI | RAATTY | 2 cut(s) | 343, 951 |
| AcyI | GRCGYC | 1 cut(s) | 145 |
| AfaI | GTAC | 1 cut(s) | 515 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 52, 164, 569 |
| AflIII | ACRYGT | 1 cut(s) | 693 |
| AgeI | ACCGGT | 1 cut(s) | 399 |
| AgsI | TTSAA | 5 cut(s) | 193, 348, 740, 847, 928 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 909 |
| AjnI | CCWGG | 1 cut(s) | 562 |
| AluBI | AGCT | 4 cut(s) | 296, 540, 622, 802 |
| AluI | AGCT | 4 cut(s) | 296, 540, 622, 802 |
| Alw26I | GTCTC | 3 cut(s) | 21, 834, 887 |
| AlwI | GGATC | 4 cut(s) | 469, 714, 820, 833 |
| Ama87I | CYCGRG | 2 cut(s) | 247, 991 |
| AoxI | GGCC | 4 cut(s) | 101, 155, 359, 524 |
| ApeKI | GCWGC | 3 cut(s) | 765, 772, 783 |
| ApoI | RAATTY | 2 cut(s) | 343, 951 |
| AsiGI | ACCGGT | 1 cut(s) | 399 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 955 |
| AspA2I | CCTAGG | 1 cut(s) | 158 |
| AspS9I | GGNCC | 3 cut(s) | 155, 961, 998 |
| AsuC2I | CCSGG | 1 cut(s) | 386 |
| AsuHPI | GGTGA | 2 cut(s) | 35, 742 |
| AvaI | CYCGRG | 2 cut(s) | 247, 991 |
| AvaII | GGWCC | 2 cut(s) | 961, 998 |
| AvrII | CCTAGG | 1 cut(s) | 158 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1056, 1089 |
| BamHI | GGATCC | 1 cut(s) | 825 |
| BbsI | GAAGAC | 2 cut(s) | 549, 1038 |
| BbvI | GCAGC | 3 cut(s) | 759, 777, 795 |
| BccI | CCATC | 6 cut(s) | 200, 307, 697, 971, 1063, 1079 |
| BceAI | ACGGC | 2 cut(s) | 374, 539 |
| BciT130I | CCWGG | 1 cut(s) | 564 |
| BciVI | GTATCC | 1 cut(s) | 426 |
| BcnI | CCSGG | 1 cut(s) | 386 |
| BcoDI | GTCTC | 3 cut(s) | 21, 834, 887 |
| BfaI | CTAG | 5 cut(s) | 51, 159, 710, 803, 933 |
| BfuI | GTATCC | 1 cut(s) | 426 |
| BglII | AGATCT | 1 cut(s) | 133 |
| BisI | GCNGC | 5 cut(s) | 282, 609, 766, 773, 784 |
| BlnI | CCTAGG | 1 cut(s) | 158 |
| BlsI | GCNGC | 5 cut(s) | 283, 610, 767, 774, 785 |
| Bme1390I | CCNGG | 2 cut(s) | 386, 564 |
| Bme18I | GGWCC | 2 cut(s) | 961, 998 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 909 |
| BmeT110I | CYCGRG | 2 cut(s) | 247, 991 |
| BmgT120I | GGNCC | 3 cut(s) | 155, 961, 998 |
| BmiI | GGNNCC | 4 cut(s) | 156, 827, 963, 1122 |
| BmrFI | CCNGG | 2 cut(s) | 386, 564 |
| BmsI | GCATC | 2 cut(s) | 205, 723 |
| BpiI | GAAGAC | 2 cut(s) | 549, 1038 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 217, 249 |
| BpuMI | CCSGG | 1 cut(s) | 386 |
| BsaHI | GRCGYC | 1 cut(s) | 145 |
| BsaJI | CCNNGG | 5 cut(s) | 158, 356, 362, 562, 812 |
| BsaWI | WCCGGW | 1 cut(s) | 399 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 680, 710 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 52, 164, 569 |
| Bse118I | RCCGGY | 1 cut(s) | 399 |
| Bse1I | ACTGG | 1 cut(s) | 13 |
| Bse3DI | GCAATG | 1 cut(s) | 793 |
| BseBI | CCWGG | 1 cut(s) | 564 |
| BseDI | CCNNGG | 5 cut(s) | 158, 356, 362, 562, 812 |
| BseGI | GGATG | 3 cut(s) | 823, 982, 1090 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 52, 164, 569 |
| BseMI | GCAATG | 1 cut(s) | 793 |
| BseNI | ACTGG | 1 cut(s) | 13 |
| BseRI | GAGGAG | 5 cut(s) | 265, 279, 458, 701, 1030 |
| BseXI | GCAGC | 3 cut(s) | 759, 777, 795 |
| BshFI | GGCC | 4 cut(s) | 103, 157, 361, 526 |
| BshTI | ACCGGT | 1 cut(s) | 399 |
| BsiHKCI | CYCGRG | 2 cut(s) | 247, 991 |
| BsiSI | CCGG | 2 cut(s) | 385, 400 |
| BslFI | GGGAC | 3 cut(s) | 215, 733, 947 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 52, 164, 569 |
| BsmAI | GTCTC | 3 cut(s) | 21, 834, 887 |
| BsmBI | CGTCTC | 1 cut(s) | 887 |
| BsmFI | GGGAC | 3 cut(s) | 215, 733, 947 |
| BsnI | GGCC | 4 cut(s) | 103, 157, 361, 526 |
| BsoBI | CYCGRG | 2 cut(s) | 247, 991 |
| Bsp143I | GATC | 4 cut(s) | 133, 461, 706, 825 |
| Bsp19I | CCATGG | 1 cut(s) | 362 |
| BspACI | CCGC | 6 cut(s) | 30, 222, 282, 608, 768, 781 |
| BspANI | GGCC | 4 cut(s) | 103, 157, 361, 526 |
| BspLI | GGNNCC | 4 cut(s) | 156, 827, 963, 1122 |
| BspPI | GGATC | 4 cut(s) | 469, 714, 820, 833 |
| BsrDI | GCAATG | 1 cut(s) | 793 |
| BsrFI | RCCGGY | 1 cut(s) | 399 |
| BsrI | ACTGG | 1 cut(s) | 13 |
| BssAI | RCCGGY | 1 cut(s) | 399 |
| BssECI | CCNNGG | 5 cut(s) | 158, 356, 362, 562, 812 |
| BssMI | GATC | 4 cut(s) | 133, 461, 706, 825 |
| BssNI | GRCGYC | 1 cut(s) | 145 |
| BssT1I | CCWWGG | 2 cut(s) | 158, 362 |
| Bst2UI | CCWGG | 1 cut(s) | 564 |
| Bst4CI | ACNGT | 1 cut(s) | 1125 |
| BstACI | GRCGYC | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 5 cut(s) | 220, 488, 542, 546, 770 |
| BstDEI | CTNAG | 1 cut(s) | 119 |
| BstDSI | CCRYGG | 3 cut(s) | 356, 362, 812 |
| BstEII | GGTNACC | 1 cut(s) | 41 |
| BstF5I | GGATG | 3 cut(s) | 823, 982, 1090 |
| BstKTI | GATC | 4 cut(s) | 136, 464, 709, 828 |
| BstMAI | GTCTC | 3 cut(s) | 21, 834, 887 |
| BstMBI | GATC | 4 cut(s) | 133, 461, 706, 825 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 27, 446, 483 |
| BstNI | CCWGG | 1 cut(s) | 564 |
| BstNSI | RCATGY | 4 cut(s) | 222, 490, 548, 697 |
| BstPI | GGTNACC | 1 cut(s) | 41 |
| BstSCI | CCNGG | 2 cut(s) | 384, 562 |
| BstV1I | GCAGC | 3 cut(s) | 759, 777, 795 |
| BstV2I | GAAGAC | 2 cut(s) | 549, 1038 |
| BstX2I | RGATCY | 3 cut(s) | 133, 706, 825 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 363, 369 |
| BstYI | RGATCY | 3 cut(s) | 133, 706, 825 |
| BsuI | GTATCC | 1 cut(s) | 426 |
| BsuRI | GGCC | 4 cut(s) | 103, 157, 361, 526 |
| BtgI | CCRYGG | 3 cut(s) | 356, 362, 812 |
| BtsCI | GGATG | 3 cut(s) | 823, 982, 1090 |
| Cac8I | GCNNGC | 5 cut(s) | 220, 488, 542, 546, 770 |
| Cfr10I | RCCGGY | 1 cut(s) | 399 |
| Cfr13I | GGNCC | 3 cut(s) | 155, 961, 998 |
| Csp6I | GTAC | 1 cut(s) | 514 |
| CspAI | ACCGGT | 1 cut(s) | 399 |
| CviAII | CATG | 7 cut(s) | 219, 363, 421, 487, 545, 694, 943 |
| CviQI | GTAC | 1 cut(s) | 514 |
| DdeI | CTNAG | 1 cut(s) | 119 |
| DpnI | GATC | 4 cut(s) | 135, 463, 708, 827 |
| DpnII | GATC | 4 cut(s) | 133, 461, 706, 825 |
| DraI | TTTAAA | 2 cut(s) | 393, 472 |
| DriI | GACNNNNNGTC | 1 cut(s) | 909 |
| EaeI | YGGCCR | 1 cut(s) | 359 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 909 |
| Eco130I | CCWWGG | 2 cut(s) | 158, 362 |
| Eco147I | AGGCCT | 1 cut(s) | 103 |
| Eco47I | GGWCC | 2 cut(s) | 961, 998 |
| Eco88I | CYCGRG | 2 cut(s) | 247, 991 |
| Eco91I | GGTNACC | 1 cut(s) | 41 |
| EcoO109I | RGGNCCY | 1 cut(s) | 155 |
| EcoO65I | GGTNACC | 1 cut(s) | 41 |
| EcoRI | GAATTC | 2 cut(s) | 343, 951 |
| EcoRII | CCWGG | 1 cut(s) | 562 |
| EcoT14I | CCWWGG | 2 cut(s) | 158, 362 |
| EcoT22I | ATGCAT | 1 cut(s) | 220 |
| ErhI | CCWWGG | 2 cut(s) | 158, 362 |
| Esp3I | CGTCTC | 1 cut(s) | 887 |
| FaeI | CATG | 7 cut(s) | 222, 366, 424, 490, 548, 697, 946 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 541, 573 |
| FaqI | GGGAC | 3 cut(s) | 215, 733, 947 |
| FatI | CATG | 7 cut(s) | 218, 362, 420, 486, 544, 693, 942 |
| FauI | CCCGC | 2 cut(s) | 215, 761 |
| Fnu4HI | GCNGC | 5 cut(s) | 282, 609, 766, 773, 784 |
| FokI | GGATG | 3 cut(s) | 830, 989, 1097 |
| Fsp4HI | GCNGC | 5 cut(s) | 282, 609, 766, 773, 784 |
| FspBI | CTAG | 5 cut(s) | 51, 159, 710, 803, 933 |
| GluI | GCNGC | 5 cut(s) | 282, 609, 766, 773, 784 |
| HaeIII | GGCC | 4 cut(s) | 103, 157, 361, 526 |
| HapII | CCGG | 2 cut(s) | 385, 400 |
| Hin1I | GRCGYC | 1 cut(s) | 145 |
| Hin1II | CATG | 7 cut(s) | 222, 366, 424, 490, 548, 697, 946 |
| HincII | GTYRAC | 1 cut(s) | 630 |
| HindII | GTYRAC | 1 cut(s) | 630 |
| HindIII | AAGCTT | 2 cut(s) | 294, 620 |
| HinfI | GANTC | 3 cut(s) | 92, 230, 740 |
| HpaII | CCGG | 2 cut(s) | 385, 400 |
| HphI | GGTGA | 2 cut(s) | 35, 742 |
| Hpy166II | GTNNAC | 1 cut(s) | 630 |
| Hpy188I | TCNGA | 2 cut(s) | 97, 111 |
| Hpy188III | TCNNGA | 4 cut(s) | 310, 750, 829, 933 |
| Hpy8I | GTNNAC | 1 cut(s) | 630 |
| Hpy99I | CGWCG | 2 cut(s) | 150, 835 |
| HpyAV | CCTTC | 9 cut(s) | 295, 370, 493, 655, 659, 721, 841, 915, 1060 |
| HpyCH4III | ACNGT | 1 cut(s) | 1125 |
| HpyCH4IV | ACGT | 3 cut(s) | 145, 808, 833 |
| HpyCH4V | TGCA | 6 cut(s) | 218, 330, 440, 490, 544, 548 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 27, 446, 483 |
| HpyF3I | CTNAG | 1 cut(s) | 119 |
| HpySE526I | ACGT | 3 cut(s) | 145, 808, 833 |
| Hsp92I | GRCGYC | 1 cut(s) | 145 |
| Hsp92II | CATG | 7 cut(s) | 222, 366, 424, 490, 548, 697, 946 |
| Kzo9I | GATC | 4 cut(s) | 133, 461, 706, 825 |
| LmnI | GCTCC | 2 cut(s) | 358, 762 |
| LpnPI | CCDG | 6 cut(s) | 26, 398, 413, 549, 576, 885 |
| Lsp1109I | GCAGC | 3 cut(s) | 759, 777, 795 |
| LweI | GCATC | 2 cut(s) | 205, 723 |
| MaeI | CTAG | 5 cut(s) | 51, 159, 710, 803, 933 |
| MaeII | ACGT | 3 cut(s) | 145, 808, 833 |
| MaeIII | GTNAC | 6 cut(s) | 41, 237, 579, 986, 1072, 1102 |
| MalI | GATC | 4 cut(s) | 135, 463, 708, 827 |
| MboI | GATC | 4 cut(s) | 133, 461, 706, 825 |
| MboII | GAAGA | 4 cut(s) | 549, 586, 1038, 1045 |
| MflI | RGATCY | 3 cut(s) | 133, 706, 825 |
| MluCI | AATT | 5 cut(s) | 325, 343, 491, 680, 951 |
| MmeI | TCCRAC | 3 cut(s) | 134, 241, 405 |
| Mph1103I | ATGCAT | 1 cut(s) | 220 |
| MroXI | GAANNNNTTC | 1 cut(s) | 955 |
| MseI | TTAA | 4 cut(s) | 392, 471, 600, 798 |
| MslI | CAYNNNNRTG | 2 cut(s) | 361, 367 |
| MspA1I | CMGCKG | 1 cut(s) | 768 |
| MspI | CCGG | 2 cut(s) | 385, 400 |
| MspR9I | CCNGG | 2 cut(s) | 386, 564 |
| MvaI | CCWGG | 1 cut(s) | 564 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 27, 446, 483 |
| NciI | CCSGG | 1 cut(s) | 386 |
| NcoI | CCATGG | 1 cut(s) | 362 |
| NdeII | GATC | 4 cut(s) | 133, 461, 706, 825 |
| NlaIII | CATG | 7 cut(s) | 222, 366, 424, 490, 548, 697, 946 |
| NlaIV | GGNNCC | 4 cut(s) | 156, 827, 963, 1122 |
| NmuCI | GTSAC | 3 cut(s) | 41, 237, 1102 |
| NsiI | ATGCAT | 1 cut(s) | 220 |
| NspI | RCATGY | 4 cut(s) | 222, 490, 548, 697 |
| PaeI | GCATGC | 3 cut(s) | 222, 490, 548 |
| PaeR7I | CTCGAG | 1 cut(s) | 247 |
| PceI | AGGCCT | 1 cut(s) | 103 |
| PciI | ACATGT | 1 cut(s) | 693 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 998 |
| PdmI | GAANNNNTTC | 1 cut(s) | 955 |
| PfeI | GAWTC | 3 cut(s) | 92, 230, 740 |
| PinAI | ACCGGT | 1 cut(s) | 399 |
| PkrI | GCNGC | 5 cut(s) | 283, 610, 767, 774, 785 |
| PscI | ACATGT | 1 cut(s) | 693 |
| Psp6I | CCWGG | 1 cut(s) | 562 |
| PspEI | GGTNACC | 1 cut(s) | 41 |
| PspGI | CCWGG | 1 cut(s) | 562 |
| PspN4I | GGNNCC | 4 cut(s) | 156, 827, 963, 1122 |
| PspPI | GGNCC | 3 cut(s) | 155, 961, 998 |
| PspXI | VCTCGAGB | 1 cut(s) | 247 |
| PsuI | RGATCY | 3 cut(s) | 133, 706, 825 |
| RsaI | GTAC | 1 cut(s) | 515 |
| RsaNI | GTAC | 1 cut(s) | 514 |
| RseI | CAYNNNNRTG | 2 cut(s) | 361, 367 |
| SaqAI | TTAA | 4 cut(s) | 392, 471, 600, 798 |
| SatI | GCNGC | 5 cut(s) | 282, 609, 766, 773, 784 |
| Sau3AI | GATC | 4 cut(s) | 133, 461, 706, 825 |
| Sau96I | GGNCC | 3 cut(s) | 155, 961, 998 |
| ScrFI | CCNGG | 2 cut(s) | 386, 564 |
| SfaNI | GCATC | 2 cut(s) | 205, 723 |
| Sfr274I | CTCGAG | 1 cut(s) | 247 |
| SinI | GGWCC | 2 cut(s) | 961, 998 |
| SlaI | CTCGAG | 1 cut(s) | 247 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 361, 367 |
| SmlI | CTYRAG | 1 cut(s) | 247 |
| SmoI | CTYRAG | 1 cut(s) | 247 |
| SphI | GCATGC | 3 cut(s) | 222, 490, 548 |
| Sse9I | AATT | 5 cut(s) | 325, 343, 491, 680, 951 |
| SseBI | AGGCCT | 1 cut(s) | 103 |
| SsiI | CCGC | 6 cut(s) | 30, 222, 282, 608, 768, 781 |
| SspMI | CTAG | 5 cut(s) | 51, 159, 710, 803, 933 |
| StuI | AGGCCT | 1 cut(s) | 103 |
| StyD4I | CCNGG | 2 cut(s) | 384, 562 |
| StyI | CCWWGG | 2 cut(s) | 158, 362 |
| TaaI | ACNGT | 1 cut(s) | 1125 |
| TaiI | ACGT | 3 cut(s) | 148, 811, 836 |
| TaqI | TCGA | 4 cut(s) | 248, 309, 374, 1099 |
| TaqII | GACCGA | 2 cut(s) | 225, 949 |
| TasI | AATT | 5 cut(s) | 325, 343, 491, 680, 951 |
| TauI | GCSGC | 2 cut(s) | 284, 611 |
| TfiI | GAWTC | 3 cut(s) | 92, 230, 740 |
| Tru1I | TTAA | 4 cut(s) | 392, 471, 600, 798 |
| Tru9I | TTAA | 4 cut(s) | 392, 471, 600, 798 |
| TseFI | GTSAC | 3 cut(s) | 41, 237, 1102 |
| TseI | GCWGC | 3 cut(s) | 765, 772, 783 |
| Tsp45I | GTSAC | 3 cut(s) | 41, 237, 1102 |
| TspGWI | ACGGA | 2 cut(s) | 801, 990 |
| VpaK11BI | GGWCC | 2 cut(s) | 961, 998 |
| XapI | RAATTY | 2 cut(s) | 343, 951 |
| XbaI | TCTAGA | 1 cut(s) | 932 |
| XceI | RCATGY | 4 cut(s) | 222, 490, 548, 697 |
| XhoI | CTCGAG | 1 cut(s) | 247 |
| XmaJI | CCTAGG | 1 cut(s) | 158 |
| XmnI | GAANNNNTTC | 1 cut(s) | 955 |
| XspI | CTAG | 5 cut(s) | 51, 159, 710, 803, 933 |
| ZraI | GACGTC | 1 cut(s) | 146 |
| Zsp2I | ATGCAT | 1 cut(s) | 220 |