ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 37 - 107 | 1.7e-10 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 409 |
| Acc36I | ACCTGC | 1 cut(s) | 409 |
| AccB1I | GGYRCC | 1 cut(s) | 30 |
| AccBSI | CCGCTC | 2 cut(s) | 103, 350 |
| AciI | CCGC | 3 cut(s) | 103, 350, 1030 |
| AclWI | GGATC | 3 cut(s) | 74, 87, 617 |
| AcsI | RAATTY | 2 cut(s) | 868, 1094 |
| AcuI | CTGAAG | 1 cut(s) | 1257 |
| AcyI | GRCGYC | 1 cut(s) | 31 |
| AdeI | CACNNNGTG | 1 cut(s) | 1022 |
| AfaI | GTAC | 1 cut(s) | 720 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 349, 955, 1257 |
| AflIII | ACRYGT | 1 cut(s) | 702 |
| AgeI | ACCGGT | 1 cut(s) | 422 |
| AgsI | TTSAA | 5 cut(s) | 523, 794, 847, 873, 923 |
| AhlI | ACTAGT | 2 cut(s) | 491, 836 |
| AjnI | CCWGG | 1 cut(s) | 343 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 89, 121 |
| AluBI | AGCT | 1 cut(s) | 178 |
| AluI | AGCT | 1 cut(s) | 178 |
| Alw21I | GWGCWC | 1 cut(s) | 890 |
| Alw26I | GTCTC | 2 cut(s) | 358, 827 |
| AlwI | GGATC | 3 cut(s) | 74, 87, 617 |
| Ama87I | CYCGRG | 1 cut(s) | 1250 |
| AoxI | GGCC | 2 cut(s) | 946, 1260 |
| ApaI | GGGCCC | 1 cut(s) | 1264 |
| ApoI | RAATTY | 2 cut(s) | 868, 1094 |
| AsiGI | ACCGGT | 1 cut(s) | 422 |
| AspLEI | GCGC | 2 cut(s) | 33, 648 |
| AspS9I | GGNCC | 4 cut(s) | 364, 946, 1260, 1261 |
| AsuHPI | GGTGA | 6 cut(s) | 229, 269, 586, 1000, 1082, 1137 |
| AvaI | CYCGRG | 1 cut(s) | 1250 |
| AvaII | GGWCC | 1 cut(s) | 364 |
| BaeGI | GKGCMC | 1 cut(s) | 1264 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1065, 1098 |
| BamHI | GGATCC | 1 cut(s) | 79 |
| BanI | GGYRCC | 1 cut(s) | 30 |
| BanII | GRGCYC | 2 cut(s) | 396, 1264 |
| BbsI | GAAGAC | 2 cut(s) | 191, 530 |
| Bbv12I | GWGCWC | 1 cut(s) | 890 |
| BccI | CCATC | 5 cut(s) | 323, 328, 469, 745, 979 |
| BciT130I | CCWGG | 1 cut(s) | 345 |
| BcoDI | GTCTC | 2 cut(s) | 358, 827 |
| BcuI | ACTAGT | 2 cut(s) | 491, 836 |
| BfaI | CTAG | 5 cut(s) | 387, 492, 837, 914, 1149 |
| BfmI | CTRYAG | 1 cut(s) | 1221 |
| BfoI | RGCGCY | 2 cut(s) | 34, 649 |
| BfuAI | ACCTGC | 1 cut(s) | 409 |
| Bme1390I | CCNGG | 1 cut(s) | 345 |
| Bme18I | GGWCC | 1 cut(s) | 364 |
| BmeT110I | CYCGRG | 1 cut(s) | 1250 |
| BmgT120I | GGNCC | 4 cut(s) | 364, 946, 1260, 1261 |
| BmiI | GGNNCC | 4 cut(s) | 32, 81, 395, 1262 |
| BmrFI | CCNGG | 1 cut(s) | 345 |
| BpiI | GAAGAC | 2 cut(s) | 191, 530 |
| BpmI | CTGGAG | 2 cut(s) | 80, 366 |
| BpuEI | CTTGAG | 1 cut(s) | 190 |
| Bsa29I | ATCGAT | 1 cut(s) | 229 |
| BsaAI | YACGTR | 1 cut(s) | 722 |
| BsaHI | GRCGYC | 1 cut(s) | 31 |
| BsaI | GGTCTC | 1 cut(s) | 358 |
| BsaJI | CCNNGG | 5 cut(s) | 189, 287, 343, 628, 1251 |
| BsaWI | WCCGGW | 2 cut(s) | 135, 422 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 349, 955, 1257 |
| Bse118I | RCCGGY | 1 cut(s) | 422 |
| Bse1I | ACTGG | 1 cut(s) | 63 |
| BseBI | CCWGG | 1 cut(s) | 345 |
| BseCI | ATCGAT | 1 cut(s) | 229 |
| BseDI | CCNNGG | 5 cut(s) | 189, 287, 343, 628, 1251 |
| BseGI | GGATG | 4 cut(s) | 103, 339, 480, 613 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 349, 955, 1257 |
| BseMII | CTCAG | 3 cut(s) | 243, 968, 1118 |
| BseNI | ACTGG | 1 cut(s) | 63 |
| BseRI | GAGGAG | 3 cut(s) | 65, 454, 1268 |
| BseSI | GKGCMC | 1 cut(s) | 1264 |
| BseYI | CCCAGC | 1 cut(s) | 1199 |
| BshFI | GGCC | 2 cut(s) | 948, 1262 |
| BshNI | GGYRCC | 1 cut(s) | 30 |
| BshTI | ACCGGT | 1 cut(s) | 422 |
| BshVI | ATCGAT | 1 cut(s) | 229 |
| BsiHKAI | GWGCWC | 1 cut(s) | 890 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1250 |
| BsiSI | CCGG | 2 cut(s) | 136, 423 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 349, 955, 1257 |
| BsmAI | GTCTC | 2 cut(s) | 358, 827 |
| BsnI | GGCC | 2 cut(s) | 948, 1262 |
| Bso31I | GGTCTC | 1 cut(s) | 358 |
| BsoBI | CYCGRG | 1 cut(s) | 1250 |
| Bsp120I | GGGCCC | 1 cut(s) | 1260 |
| Bsp1286I | GDGCHC | 3 cut(s) | 396, 890, 1264 |
| Bsp143I | GATC | 4 cut(s) | 79, 226, 532, 622 |
| Bsp19I | CCATGG | 2 cut(s) | 287, 628 |
| BspACI | CCGC | 3 cut(s) | 103, 350, 1030 |
| BspANI | GGCC | 2 cut(s) | 948, 1262 |
| BspCNI | CTCAG | 3 cut(s) | 244, 967, 1117 |
| BspDI | ATCGAT | 1 cut(s) | 229 |
| BspLI | GGNNCC | 4 cut(s) | 32, 81, 395, 1262 |
| BspMI | ACCTGC | 1 cut(s) | 409 |
| BspPI | GGATC | 3 cut(s) | 74, 87, 617 |
| BspT107I | GGYRCC | 1 cut(s) | 30 |
| BspTNI | GGTCTC | 1 cut(s) | 358 |
| BsrBI | CCGCTC | 2 cut(s) | 103, 350 |
| BsrFI | RCCGGY | 1 cut(s) | 422 |
| BsrI | ACTGG | 1 cut(s) | 63 |
| BssAI | RCCGGY | 1 cut(s) | 422 |
| BssECI | CCNNGG | 5 cut(s) | 189, 287, 343, 628, 1251 |
| BssMI | GATC | 4 cut(s) | 79, 226, 532, 622 |
| BssNI | GRCGYC | 1 cut(s) | 31 |
| BssT1I | CCWWGG | 3 cut(s) | 189, 287, 628 |
| Bst2UI | CCWGG | 1 cut(s) | 345 |
| Bst4CI | ACNGT | 7 cut(s) | 73, 142, 364, 588, 798, 1063, 1225 |
| BstACI | GRCGYC | 1 cut(s) | 31 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 271 |
| BstBAI | YACGTR | 1 cut(s) | 722 |
| BstDEI | CTNAG | 6 cut(s) | 252, 543, 603, 954, 1104, 1176 |
| BstDSI | CCRYGG | 2 cut(s) | 287, 628 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 953 |
| BstF5I | GGATG | 4 cut(s) | 103, 339, 480, 613 |
| BstH2I | RGCGCY | 2 cut(s) | 34, 649 |
| BstHHI | GCGC | 2 cut(s) | 33, 648 |
| BstKTI | GATC | 4 cut(s) | 82, 229, 535, 625 |
| BstMAI | GTCTC | 2 cut(s) | 358, 827 |
| BstMBI | GATC | 4 cut(s) | 79, 226, 532, 622 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 109, 271, 311, 945, 1108 |
| BstNI | CCWGG | 1 cut(s) | 345 |
| BstNSI | RCATGY | 1 cut(s) | 706 |
| BstSCI | CCNGG | 1 cut(s) | 343 |
| BstSFI | CTRYAG | 1 cut(s) | 1221 |
| BstSLI | GKGCMC | 1 cut(s) | 1264 |
| BstV2I | GAAGAC | 2 cut(s) | 191, 530 |
| BstX2I | RGATCY | 1 cut(s) | 79 |
| BstYI | RGATCY | 1 cut(s) | 79 |
| Bsu15I | ATCGAT | 1 cut(s) | 229 |
| BsuRI | GGCC | 2 cut(s) | 948, 1262 |
| BsuTUI | ATCGAT | 1 cut(s) | 229 |
| BtgI | CCRYGG | 2 cut(s) | 287, 628 |
| BtsCI | GGATG | 4 cut(s) | 103, 339, 480, 613 |
| BtsIMutI | CAGTG | 2 cut(s) | 803, 1230 |
| BveI | ACCTGC | 1 cut(s) | 409 |
| CfoI | GCGC | 2 cut(s) | 33, 648 |
| Cfr10I | RCCGGY | 1 cut(s) | 422 |
| Cfr13I | GGNCC | 4 cut(s) | 364, 946, 1260, 1261 |
| ClaI | ATCGAT | 1 cut(s) | 229 |
| Csp6I | GTAC | 1 cut(s) | 719 |
| CspAI | ACCGGT | 1 cut(s) | 422 |
| CviAII | CATG | 5 cut(s) | 288, 629, 703, 785, 803 |
| CviJI | RGCY | 6 cut(s) | 112, 178, 314, 394, 948, 1262 |
| CviKI_1 | RGCY | 6 cut(s) | 112, 178, 314, 394, 948, 1262 |
| CviQI | GTAC | 1 cut(s) | 719 |
| DdeI | CTNAG | 6 cut(s) | 252, 543, 603, 954, 1104, 1176 |
| DinI | GGCGCC | 1 cut(s) | 32 |
| DpnI | GATC | 4 cut(s) | 81, 228, 534, 624 |
| DpnII | GATC | 4 cut(s) | 79, 226, 532, 622 |
| DraI | TTTAAA | 1 cut(s) | 247 |
| DraIII | CACNNNGTG | 1 cut(s) | 1022 |
| EciI | GGCGGA | 1 cut(s) | 1045 |
| Eco130I | CCWWGG | 3 cut(s) | 189, 287, 628 |
| Eco24I | GRGCYC | 2 cut(s) | 396, 1264 |
| Eco31I | GGTCTC | 1 cut(s) | 358 |
| Eco47I | GGWCC | 1 cut(s) | 364 |
| Eco57I | CTGAAG | 1 cut(s) | 1257 |
| Eco88I | CYCGRG | 1 cut(s) | 1250 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 953 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1260 |
| EcoRII | CCWGG | 1 cut(s) | 343 |
| EcoT14I | CCWWGG | 3 cut(s) | 189, 287, 628 |
| EcoT38I | GRGCYC | 2 cut(s) | 396, 1264 |
| EgeI | GGCGCC | 1 cut(s) | 32 |
| EheI | GGCGCC | 1 cut(s) | 32 |
| ErhI | CCWWGG | 3 cut(s) | 189, 287, 628 |
| FaeI | CATG | 5 cut(s) | 291, 632, 706, 788, 806 |
| FatI | CATG | 5 cut(s) | 287, 628, 702, 784, 802 |
| FokI | GGATG | 4 cut(s) | 110, 346, 487, 620 |
| FriOI | GRGCYC | 2 cut(s) | 396, 1264 |
| FspBI | CTAG | 5 cut(s) | 387, 492, 837, 914, 1149 |
| GlaI | GCGC | 2 cut(s) | 32, 647 |
| GsaI | CCCAGC | 1 cut(s) | 1203 |
| GsuI | CTGGAG | 2 cut(s) | 80, 366 |
| HaeII | RGCGCY | 2 cut(s) | 34, 649 |
| HaeIII | GGCC | 2 cut(s) | 948, 1262 |
| HapII | CCGG | 2 cut(s) | 136, 423 |
| HhaI | GCGC | 2 cut(s) | 33, 648 |
| Hin1I | GRCGYC | 1 cut(s) | 31 |
| Hin1II | CATG | 5 cut(s) | 291, 632, 706, 788, 806 |
| Hin6I | GCGC | 2 cut(s) | 31, 646 |
| HinP1I | GCGC | 2 cut(s) | 31, 646 |
| HincII | GTYRAC | 1 cut(s) | 340 |
| HindII | GTYRAC | 1 cut(s) | 340 |
| HindIII | AAGCTT | 1 cut(s) | 176 |
| HinfI | GANTC | 3 cut(s) | 152, 379, 1013 |
| HpaII | CCGG | 2 cut(s) | 136, 423 |
| HphI | GGTGA | 6 cut(s) | 229, 269, 586, 1000, 1082, 1137 |
| Hpy166II | GTNNAC | 3 cut(s) | 220, 340, 1145 |
| Hpy188I | TCNGA | 7 cut(s) | 84, 226, 328, 660, 697, 772, 1107 |
| Hpy188III | TCNNGA | 3 cut(s) | 160, 169, 376 |
| Hpy8I | GTNNAC | 3 cut(s) | 220, 340, 1145 |
| HpyAV | CCTTC | 9 cut(s) | 542, 565, 682, 728, 810, 917, 968, 1020, 1186 |
| HpyCH4III | ACNGT | 7 cut(s) | 73, 142, 364, 588, 798, 1063, 1225 |
| HpyCH4IV | ACGT | 1 cut(s) | 721 |
| HpyCH4V | TGCA | 1 cut(s) | 784 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 109, 271, 311, 945, 1108 |
| HpyF3I | CTNAG | 6 cut(s) | 252, 543, 603, 954, 1104, 1176 |
| HpySE526I | ACGT | 1 cut(s) | 721 |
| Hsp92I | GRCGYC | 1 cut(s) | 31 |
| Hsp92II | CATG | 5 cut(s) | 291, 632, 706, 788, 806 |
| HspAI | GCGC | 2 cut(s) | 31, 646 |
| KasI | GGCGCC | 1 cut(s) | 30 |
| Kzo9I | GATC | 4 cut(s) | 79, 226, 532, 622 |
| LmnI | GCTCC | 4 cut(s) | 347, 399, 441, 885 |
| MaeI | CTAG | 5 cut(s) | 387, 492, 837, 914, 1149 |
| MaeII | ACGT | 1 cut(s) | 721 |
| MaeIII | GTNAC | 4 cut(s) | 257, 636, 822, 1014 |
| MalI | GATC | 4 cut(s) | 81, 228, 534, 624 |
| MbiI | CCGCTC | 2 cut(s) | 103, 350 |
| MboI | GATC | 4 cut(s) | 79, 226, 532, 622 |
| MboII | GAAGA | 6 cut(s) | 17, 196, 535, 743, 1102, 1221 |
| MflI | RGATCY | 1 cut(s) | 79 |
| MhlI | GDGCHC | 3 cut(s) | 396, 890, 1264 |
| MluCI | AATT | 4 cut(s) | 507, 563, 868, 1094 |
| Mly113I | GGCGCC | 1 cut(s) | 31 |
| MlyI | GAGTC | 2 cut(s) | 161, 1022 |
| MmeI | TCCRAC | 2 cut(s) | 156, 534 |
| MseI | TTAA | 2 cut(s) | 246, 566 |
| MspI | CCGG | 2 cut(s) | 136, 423 |
| MspR9I | CCNGG | 1 cut(s) | 345 |
| MvaI | CCWGG | 1 cut(s) | 345 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 109, 271, 311, 945, 1108 |
| NarI | GGCGCC | 1 cut(s) | 31 |
| NcoI | CCATGG | 2 cut(s) | 287, 628 |
| NdeII | GATC | 4 cut(s) | 79, 226, 532, 622 |
| NlaIII | CATG | 5 cut(s) | 291, 632, 706, 788, 806 |
| NlaIV | GGNNCC | 4 cut(s) | 32, 81, 395, 1262 |
| NmeAIII | GCCGAG | 1 cut(s) | 7 |
| NmuCI | GTSAC | 2 cut(s) | 257, 1014 |
| NspI | RCATGY | 1 cut(s) | 706 |
| PaqCI | CACCTGC | 1 cut(s) | 409 |
| PciI | ACATGT | 1 cut(s) | 702 |
| PfeI | GAWTC | 1 cut(s) | 379 |
| PinAI | ACCGGT | 1 cut(s) | 422 |
| PleI | GAGTC | 2 cut(s) | 160, 1021 |
| PluTI | GGCGCC | 1 cut(s) | 34 |
| PpsI | GAGTC | 2 cut(s) | 160, 1021 |
| Ppu21I | YACGTR | 1 cut(s) | 722 |
| PscI | ACATGT | 1 cut(s) | 702 |
| Psp6I | CCWGG | 1 cut(s) | 343 |
| PspFI | CCCAGC | 1 cut(s) | 1199 |
| PspGI | CCWGG | 1 cut(s) | 343 |
| PspN4I | GGNNCC | 4 cut(s) | 32, 81, 395, 1262 |
| PspOMI | GGGCCC | 1 cut(s) | 1260 |
| PspPI | GGNCC | 4 cut(s) | 364, 946, 1260, 1261 |
| PsuI | RGATCY | 1 cut(s) | 79 |
| RsaI | GTAC | 1 cut(s) | 720 |
| RsaNI | GTAC | 1 cut(s) | 719 |
| SaqAI | TTAA | 2 cut(s) | 246, 566 |
| Sau3AI | GATC | 4 cut(s) | 79, 226, 532, 622 |
| Sau96I | GGNCC | 4 cut(s) | 364, 946, 1260, 1261 |
| SchI | GAGTC | 2 cut(s) | 161, 1022 |
| ScrFI | CCNGG | 1 cut(s) | 345 |
| SduI | GDGCHC | 3 cut(s) | 396, 890, 1264 |
| SfcI | CTRYAG | 1 cut(s) | 1221 |
| SfoI | GGCGCC | 1 cut(s) | 32 |
| SinI | GGWCC | 1 cut(s) | 364 |
| SmlI | CTYRAG | 1 cut(s) | 169 |
| SmoI | CTYRAG | 1 cut(s) | 169 |
| SpeI | ACTAGT | 2 cut(s) | 491, 836 |
| Sse9I | AATT | 4 cut(s) | 507, 563, 868, 1094 |
| SsiI | CCGC | 3 cut(s) | 103, 350, 1030 |
| SspDI | GGCGCC | 1 cut(s) | 30 |
| SspMI | CTAG | 5 cut(s) | 387, 492, 837, 914, 1149 |
| StyD4I | CCNGG | 1 cut(s) | 343 |
| StyI | CCWWGG | 3 cut(s) | 189, 287, 628 |
| TaaI | ACNGT | 7 cut(s) | 73, 142, 364, 588, 798, 1063, 1225 |
| TaiI | ACGT | 1 cut(s) | 724 |
| TaqI | TCGA | 3 cut(s) | 229, 535, 809 |
| TasI | AATT | 4 cut(s) | 507, 563, 868, 1094 |
| TfiI | GAWTC | 1 cut(s) | 379 |
| Tru1I | TTAA | 2 cut(s) | 246, 566 |
| Tru9I | TTAA | 2 cut(s) | 246, 566 |
| TscAI | CASTG | 2 cut(s) | 803, 1230 |
| TseFI | GTSAC | 2 cut(s) | 257, 1014 |
| Tsp45I | GTSAC | 2 cut(s) | 257, 1014 |
| TspDTI | ATGAA | 3 cut(s) | 701, 755, 950 |
| TspGWI | ACGGA | 2 cut(s) | 501, 905 |
| TspRI | CASTG | 2 cut(s) | 803, 1230 |
| VpaK11BI | GGWCC | 1 cut(s) | 364 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 953 |
| XapI | RAATTY | 2 cut(s) | 868, 1094 |
| XceI | RCATGY | 1 cut(s) | 706 |
| XspI | CTAG | 5 cut(s) | 387, 492, 837, 914, 1149 |