Rmu_ssc0000432.1_g000047

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000432.1
OG0000022
Physical Location & Seq
Forward (+)
183395 .. 184927
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000432.1_g000047.1.cds

Sequence Viewer

Length: 1533 bp
atggaggaggagttaggaaatctggttaggcgattggcgctcacagaggaggaggcccaagagatcatcctgccggagacgtctacagattggaaacctaaaaaattccttattgtgggcagattgatgacgagcaaaccctacaggaaggaggccttgatgggaacaatgaagactctctggtgttcgaagaacagtagtagagagaggcccagagttacagccgtggctttggaagggagtgacaggattgttttttccttttcccatgaatatgatcggaatcgagtcttgtttggaagtccgtggcattttgataaggctctttttgccatctcagcgacggatggtagggaagatttgttgaaggtttctcttaattggcaacttttctggatccgggcgtggggggtccctcctctgtacatggagaaagaaacaggagtacatattggggatacagtggggagatatgtccggatggaagaggatgtgcatgggatttatctgggtacttctctcaaggtgagagtgatgatagatgttagcaaacccctcaggagagttgcttctgttcgactccctcggaatgataaggtttcgtgttttgagctcgattaccacaaacttccgacattctgcttttactatggactgttgtctcatgactctaaccggtgtgaactgcacaccaatggaacgatccaggagatgcagttcgatgtgcttatgtgtgctgaaagaagagaccagtggttggcagagaaattgaaaaaggaaacgcttgagtcggcgtcggaaccggaagcttgctggacaggatgcaggtttggattgattgagaagaagagaagtcgctggaccattcaggcacctgactttccgatatccgggatggtccgaactaggtcagaatgggaggatgagcacctagtatgcgaagtgggtgatgtaatggaggaggattcagctcaggaactggagttgggagggggtgggggagcggtgaagcggcggcgtaccggtgatttgctgccggaatcggtgatgtgctcaatcaatgggagtggattacgggatgtccccattaatgccagcccagaattatcccgggcattaatggtgatgaattctggagtcgggttaaatgagggaatggcggatagggtggagggatctcaggagaggagtgcagattgggcgggacaattttcaactacagctattctcacaggacaaaaggcgaagaagctggttttgcgtttggacaaggaaaacccaattgggccgactggtgggggctgtgcctccggggctgctagtgagaataatgggctgcagattgaagttgcatcgtgtggtaatacgagtggacagggtaaacaaaagaagagagtttcacggggtcaatcgcaggccatattggccccgtcttctcctgggcctactgggacttcagaggtggacaacgtaaggaaagggaagagaggttttgcagtagggggacgtcgcccaccagcagaggcccaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

510

Amino Acids

56.69

Weight (kDa)

7.53

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 83, 1510
Acc36I ACCTGC 1 cut(s) 816
AccB1I GGYRCC 1 cut(s) 871
AccB7I CCANNNNNTGG 1 cut(s) 757
AccBSI CCGCTC 1 cut(s) 1004
AccI GTMKAC 1 cut(s) 83
AccIII TCCGGA 1 cut(s) 477
AciI CCGC 5 cut(s) 1004, 1012, 1015, 1160, 1202
AclWI GGATC 4 cut(s) 391, 404, 697, 1183
AcsI RAATTY 2 cut(s) 104, 1129
AcuI CTGAAG 1 cut(s) 1440
AcyI GRCGYC 3 cut(s) 80, 794, 1507
AfaI GTAC 4 cut(s) 425, 447, 514, 1021
AfiI CCNNNNNNNGG 5 cut(s) 115, 406, 757, 890, 1295
AgeI ACCGGT 2 cut(s) 675, 1022
AgsI TTSAA 4 cut(s) 367, 772, 1215, 1346
AjnI CCWGG 2 cut(s) 705, 1438
AjuI GAANNNNNNNTTGG 2 cut(s) 1266, 1298
AloI GAACNNNNNNTCC 2 cut(s) 701, 733
AluBI AGCT 5 cut(s) 613, 809, 971, 1223, 1252
AluI AGCT 5 cut(s) 613, 809, 971, 1223, 1252
Alw21I GWGCWC 3 cut(s) 615, 930, 1055
Alw26I GTCTC 3 cut(s) 71, 666, 741
AlwI GGATC 4 cut(s) 391, 404, 697, 1183
AlwNI CAGNNNCTG 1 cut(s) 979
Ama87I CYCGRG 1 cut(s) 1110
Aor13HI TCCGGA 1 cut(s) 477
AoxI GGCC 8 cut(s) 54, 153, 209, 1286, 1416, 1425, 1442, 1524
ApeKI GCWGC 3 cut(s) 1033, 1316, 1336
ApoI RAATTY 2 cut(s) 104, 1129
AseI ATTAAT 2 cut(s) 1089, 1118
AsiGI ACCGGT 2 cut(s) 675, 1022
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 9 cut(s) 55, 210, 412, 861, 898, 1286, 1426, 1442, 1525
AsuC2I CCSGG 5 cut(s) 401, 892, 1111, 1112, 1312
AsuHPI GGTGA 6 cut(s) 538, 959, 1018, 1037, 1057, 1135
AsuII TTCGAA 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 1110
AvaII GGWCC 3 cut(s) 412, 861, 898
AxyI CCTNAGG 1 cut(s) 557
BamHI GGATCC 1 cut(s) 396
BanI GGYRCC 1 cut(s) 871
BanII GRGCYC 1 cut(s) 615
BbsI GAAGAC 2 cut(s) 179, 1425
Bbv12I GWGCWC 3 cut(s) 615, 930, 1055
BbvI GCAGC 3 cut(s) 1020, 1303, 1323
BccI CCATC 5 cut(s) 154, 341, 341, 475, 889
BceAI ACGGC 1 cut(s) 209
BciT130I CCWGG 2 cut(s) 707, 1440
BciVI GTATCC 1 cut(s) 451
BcnI CCSGG 5 cut(s) 401, 892, 1111, 1112, 1312
BcoDI GTCTC 3 cut(s) 71, 666, 741
BfaI CTAG 3 cut(s) 906, 932, 1320
BfmI CTRYAG 4 cut(s) 84, 142, 1218, 1337
BfoI RGCGCY 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 816
BfuI GTATCC 1 cut(s) 451
BglI GCCNNNNNGGC 2 cut(s) 1313, 1424
BisI GCNGC 5 cut(s) 1013, 1016, 1034, 1317, 1337
BlsI GCNGC 5 cut(s) 1014, 1017, 1035, 1318, 1338
Bme1390I CCNGG 7 cut(s) 401, 707, 892, 1111, 1112, 1312, 1440
Bme18I GGWCC 3 cut(s) 412, 861, 898
BmeT110I CYCGRG 1 cut(s) 1110
BmgT120I GGNCC 9 cut(s) 55, 210, 412, 861, 898, 1286, 1426, 1442, 1525
BmiI GGNNCC 6 cut(s) 398, 413, 414, 801, 873, 1428
BmrFI CCNGG 7 cut(s) 401, 707, 892, 1111, 1112, 1312, 1440
BmrI ACTGGG 1 cut(s) 1458
BmsI GCATC 3 cut(s) 702, 812, 1361
BmuI ACTGGG 1 cut(s) 1458
BoxI GACNNNNGTC 1 cut(s) 658
BpiI GAAGAC 2 cut(s) 179, 1425
BpmI CTGGAG 2 cut(s) 1001, 1155
Bpu10I CCTNAGC 1 cut(s) 972
Bpu14I TTCGAA 1 cut(s) 188
BpuEI CTTGAG 2 cut(s) 506, 806
BpuMI CCSGG 5 cut(s) 401, 892, 1111, 1112, 1312
BsaBI GATNNNNATC 1 cut(s) 282
BsaHI GRCGYC 3 cut(s) 80, 794, 1507
BsaI GGTCTC 1 cut(s) 741
BsaJI CCNNGG 6 cut(s) 225, 305, 584, 1110, 1311, 1439
BsaWI WCCGGW 4 cut(s) 477, 675, 802, 1022
BsaXI ACNNNNNCTCC 3 cut(s) 26, 701, 731
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 406, 757, 890, 1295
Bse118I RCCGGY 2 cut(s) 675, 1022
Bse1I ACTGG 4 cut(s) 751, 984, 1297, 1453
Bse21I CCTNAGG 1 cut(s) 557
Bse8I GATNNNNATC 1 cut(s) 282
BseAI TCCGGA 1 cut(s) 477
BseBI CCWGG 2 cut(s) 707, 1440
BseDI CCNNGG 6 cut(s) 225, 305, 584, 1110, 1311, 1439
BseGI GGATG 8 cut(s) 66, 352, 486, 496, 827, 900, 928, 1084
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 5 cut(s) 115, 406, 757, 890, 1295
BseMII CTCAG 4 cut(s) 351, 571, 986, 1193
BseNI ACTGG 4 cut(s) 751, 984, 1297, 1453
BseRI GAGGAG 7 cut(s) 20, 23, 62, 65, 408, 974, 1201
BseXI GCAGC 3 cut(s) 1020, 1303, 1323
BsgI GTGCAG 2 cut(s) 671, 1212
BshFI GGCC 8 cut(s) 56, 155, 211, 1288, 1418, 1427, 1444, 1526
BshNI GGYRCC 1 cut(s) 871
BshTI ACCGGT 2 cut(s) 675, 1022
BsiHKAI GWGCWC 3 cut(s) 615, 930, 1055
BsiHKCI CYCGRG 1 cut(s) 1110
BslFI GGGAC 5 cut(s) 398, 1067, 1218, 1465, 1518
BslI CCNNNNNNNGG 5 cut(s) 115, 406, 757, 890, 1295
BsmAI GTCTC 3 cut(s) 71, 666, 741
BsmBI CGTCTC 1 cut(s) 71
BsmFI GGGAC 5 cut(s) 398, 1067, 1218, 1465, 1518
BsnI GGCC 8 cut(s) 56, 155, 211, 1288, 1418, 1427, 1444, 1526
Bso31I GGTCTC 1 cut(s) 741
BsoBI CYCGRG 1 cut(s) 1110
Bsp119I TTCGAA 1 cut(s) 188
Bsp1286I GDGCHC 3 cut(s) 615, 930, 1055
Bsp13I TCCGGA 1 cut(s) 477
Bsp1407I TGTACA 1 cut(s) 423
Bsp143I GATC 5 cut(s) 63, 277, 396, 702, 1175
BspACI CCGC 5 cut(s) 1004, 1012, 1015, 1160, 1202
BspANI GGCC 8 cut(s) 56, 155, 211, 1288, 1418, 1427, 1444, 1526
BspCNI CTCAG 4 cut(s) 350, 570, 985, 1192
BspEI TCCGGA 1 cut(s) 477
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 6 cut(s) 398, 413, 414, 801, 873, 1428
BspMAI CTGCAG 1 cut(s) 1341
BspMI ACCTGC 1 cut(s) 816
BspPI GGATC 4 cut(s) 391, 404, 697, 1183
BspT104I TTCGAA 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 871
BspTNI GGTCTC 1 cut(s) 741
BsrBI CCGCTC 1 cut(s) 1004
BsrFI RCCGGY 2 cut(s) 675, 1022
BsrGI TGTACA 1 cut(s) 423
BsrI ACTGG 4 cut(s) 751, 984, 1297, 1453
BssAI RCCGGY 2 cut(s) 675, 1022
BssECI CCNNGG 6 cut(s) 225, 305, 584, 1110, 1311, 1439
BssMI GATC 5 cut(s) 63, 277, 396, 702, 1175
BssNI GRCGYC 3 cut(s) 80, 794, 1507
Bst2UI CCWGG 2 cut(s) 707, 1440
Bst4CI ACNGT 3 cut(s) 197, 463, 657
Bst6I CTCTTC 5 cut(s) 480, 739, 842, 1385, 1478
BstACI GRCGYC 3 cut(s) 80, 794, 1507
BstAUI TGTACA 1 cut(s) 423
BstBI TTCGAA 1 cut(s) 188
BstC8I GCNNGC 3 cut(s) 811, 1096, 1416
BstDEI CTNAG 4 cut(s) 337, 557, 972, 1179
BstDSI CCRYGG 2 cut(s) 225, 305
BstF5I GGATG 8 cut(s) 66, 352, 486, 496, 827, 900, 928, 1084
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 5 cut(s) 66, 280, 399, 705, 1178
BstMAI GTCTC 3 cut(s) 71, 666, 741
BstMBI GATC 5 cut(s) 63, 277, 396, 702, 1175
BstMWI GCNNNNNNNGC 7 cut(s) 37, 329, 338, 1199, 1258, 1313, 1424
BstNI CCWGG 2 cut(s) 707, 1440
BstPAI GACNNNNGTC 1 cut(s) 658
BstSCI CCNGG 7 cut(s) 399, 705, 890, 1109, 1110, 1310, 1438
BstSFI CTRYAG 4 cut(s) 84, 142, 1218, 1337
BstV1I GCAGC 3 cut(s) 1020, 1303, 1323
BstV2I GAAGAC 2 cut(s) 179, 1425
BstX2I RGATCY 2 cut(s) 396, 1175
BstYI RGATCY 2 cut(s) 396, 1175
Bsu36I CCTNAGG 1 cut(s) 557
BsuI GTATCC 1 cut(s) 451
BsuRI GGCC 8 cut(s) 56, 155, 211, 1288, 1418, 1427, 1444, 1526
BtgI CCRYGG 2 cut(s) 225, 305
BtsCI GGATG 8 cut(s) 66, 352, 486, 496, 827, 900, 928, 1084
BtsIMutI CAGTG 2 cut(s) 468, 758
BveI ACCTGC 1 cut(s) 816
Cac8I GCNNGC 3 cut(s) 811, 1096, 1416
CaiI CAGNNNCTG 1 cut(s) 979
CciI TCATGA 1 cut(s) 664
CfoI GCGC 1 cut(s) 40
Cfr10I RCCGGY 2 cut(s) 675, 1022
Cfr13I GGNCC 9 cut(s) 55, 210, 412, 861, 898, 1286, 1426, 1442, 1525
Cfr9I CCCGGG 1 cut(s) 1110
CseI GACGC 1 cut(s) 783
Csp6I GTAC 4 cut(s) 424, 446, 513, 1020
CspAI ACCGGT 2 cut(s) 675, 1022
CspCI CAANNNNNGTGG 2 cut(s) 1048, 1083
CviAII CATG 4 cut(s) 269, 427, 497, 665
CviQI GTAC 4 cut(s) 424, 446, 513, 1020
DdeI CTNAG 4 cut(s) 337, 557, 972, 1179
DpnI GATC 5 cut(s) 65, 279, 398, 704, 1177
DpnII GATC 5 cut(s) 63, 277, 396, 702, 1175
Eam1104I CTCTTC 5 cut(s) 480, 739, 842, 1385, 1478
EarI CTCTTC 5 cut(s) 480, 739, 842, 1385, 1478
EciI GGCGGA 1 cut(s) 1175
Ecl136II GAGCTC 1 cut(s) 613
Eco147I AGGCCT 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 615
Eco31I GGTCTC 1 cut(s) 741
Eco32I GATATC 1 cut(s) 888
Eco47I GGWCC 3 cut(s) 412, 861, 898
Eco53kI GAGCTC 1 cut(s) 613
Eco57I CTGAAG 1 cut(s) 1440
Eco81I CCTNAGG 1 cut(s) 557
Eco88I CYCGRG 1 cut(s) 1110
EcoICRI GAGCTC 1 cut(s) 613
EcoO109I RGGNCCY 1 cut(s) 412
EcoRI GAATTC 1 cut(s) 1129
EcoRII CCWGG 2 cut(s) 705, 1438
EcoRV GATATC 1 cut(s) 888
EcoT38I GRGCYC 1 cut(s) 615
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 4 cut(s) 272, 430, 500, 668
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 5 cut(s) 398, 1067, 1218, 1465, 1518
FatI CATG 4 cut(s) 268, 426, 496, 664
FauI CCCGC 1 cut(s) 1195
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 5 cut(s) 1013, 1016, 1034, 1317, 1337
FokI GGATG 8 cut(s) 53, 359, 493, 503, 834, 907, 935, 1091
FriOI GRGCYC 1 cut(s) 615
Fsp4HI GCNGC 5 cut(s) 1013, 1016, 1034, 1317, 1337
FspBI CTAG 3 cut(s) 906, 932, 1320
GlaI GCGC 1 cut(s) 39
GluI GCNGC 5 cut(s) 1013, 1016, 1034, 1317, 1337
GsuI CTGGAG 2 cut(s) 1001, 1155
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 8 cut(s) 56, 155, 211, 1288, 1418, 1427, 1444, 1526
HgaI GACGC 1 cut(s) 783
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 3 cut(s) 80, 794, 1507
Hin1II CATG 4 cut(s) 272, 430, 500, 668
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HindIII AAGCTT 1 cut(s) 807
HinfI GANTC 9 cut(s) 175, 283, 288, 579, 668, 788, 965, 1040, 1137
HphI GGTGA 6 cut(s) 538, 959, 1018, 1037, 1057, 1135
Hpy166II GTNNAC 5 cut(s) 84, 683, 1373, 1382, 1465
Hpy188I TCNGA 8 cut(s) 282, 588, 633, 799, 885, 902, 913, 1459
Hpy188III TCNNGA 7 cut(s) 394, 478, 559, 665, 974, 1134, 1181
Hpy8I GTNNAC 5 cut(s) 84, 683, 1373, 1382, 1465
Hpy99I CGWCG 3 cut(s) 346, 799, 1512
HpyAV CCTTC 3 cut(s) 142, 230, 361
HpyCH4III ACNGT 3 cut(s) 197, 463, 657
HpyCH4IV ACGT 3 cut(s) 80, 1470, 1507
HpyCH4V TGCA 8 cut(s) 496, 688, 715, 825, 1193, 1339, 1352, 1496
HpyF10VI GCNNNNNNNGC 7 cut(s) 37, 329, 338, 1199, 1258, 1313, 1424
HpyF3I CTNAG 4 cut(s) 337, 557, 972, 1179
HpySE526I ACGT 3 cut(s) 80, 1470, 1507
Hsp92I GRCGYC 3 cut(s) 80, 794, 1507
Hsp92II CATG 4 cut(s) 272, 430, 500, 668
HspAI GCGC 1 cut(s) 38
KflI GGGWCCC 1 cut(s) 412
Kpn2I TCCGGA 1 cut(s) 477
Kzo9I GATC 5 cut(s) 63, 277, 396, 702, 1175
LmnI GCTCC 1 cut(s) 1001
Lsp1109I GCAGC 3 cut(s) 1020, 1303, 1323
LweI GCATC 3 cut(s) 702, 812, 1361
MaeI CTAG 3 cut(s) 906, 932, 1320
MaeII ACGT 3 cut(s) 80, 1470, 1507
MaeIII GTNAC 2 cut(s) 217, 242
MalI GATC 5 cut(s) 65, 279, 398, 704, 1177
MbiI CCGCTC 1 cut(s) 1004
MboI GATC 5 cut(s) 63, 277, 396, 702, 1175
MfeI CAATTG 1 cut(s) 1281
MflI RGATCY 2 cut(s) 396, 1175
MhlI GDGCHC 3 cut(s) 615, 930, 1055
MluCI AATT 7 cut(s) 104, 379, 767, 1103, 1129, 1208, 1281
MlyI GAGTC 6 cut(s) 169, 297, 573, 662, 797, 1146
MmeI TCCRAC 2 cut(s) 656, 777
MroI TCCGGA 1 cut(s) 477
MseI TTAA 4 cut(s) 378, 1089, 1118, 1145
MslI CAYNNNNRTG 2 cut(s) 273, 693
MspR9I CCNGG 7 cut(s) 401, 707, 892, 1111, 1112, 1312, 1440
MunI CAATTG 1 cut(s) 1281
MvaI CCWGG 2 cut(s) 707, 1440
MwoI GCNNNNNNNGC 7 cut(s) 37, 329, 338, 1199, 1258, 1313, 1424
NciI CCSGG 5 cut(s) 401, 892, 1111, 1112, 1312
NdeII GATC 5 cut(s) 63, 277, 396, 702, 1175
NlaIII CATG 4 cut(s) 272, 430, 500, 668
NlaIV GGNNCC 6 cut(s) 398, 413, 414, 801, 873, 1428
NmuCI GTSAC 1 cut(s) 242
NspV TTCGAA 1 cut(s) 188
PagI TCATGA 1 cut(s) 664
PceI AGGCCT 1 cut(s) 155
PfeI GAWTC 3 cut(s) 283, 965, 1040
PflMI CCANNNNNTGG 1 cut(s) 757
PfoI TCCNGGA 2 cut(s) 705, 890
PinAI ACCGGT 2 cut(s) 675, 1022
PkrI GCNGC 5 cut(s) 1014, 1017, 1035, 1318, 1338
PleI GAGTC 6 cut(s) 169, 296, 573, 662, 796, 1145
PpsI GAGTC 6 cut(s) 169, 296, 573, 662, 796, 1145
PpuMI RGGWCCY 1 cut(s) 412
PshAI GACNNNNGTC 1 cut(s) 658
PshBI ATTAAT 2 cut(s) 1089, 1118
Psp124BI GAGCTC 1 cut(s) 615
Psp5II RGGWCCY 1 cut(s) 412
Psp6I CCWGG 2 cut(s) 705, 1438
PspGI CCWGG 2 cut(s) 705, 1438
PspN4I GGNNCC 6 cut(s) 398, 413, 414, 801, 873, 1428
PspPI GGNCC 9 cut(s) 55, 210, 412, 861, 898, 1286, 1426, 1442, 1525
PspPPI RGGWCCY 1 cut(s) 412
PstI CTGCAG 1 cut(s) 1341
PstNI CAGNNNCTG 1 cut(s) 979
PsuI RGATCY 2 cut(s) 396, 1175
RsaI GTAC 4 cut(s) 425, 447, 514, 1021
RsaNI GTAC 4 cut(s) 424, 446, 513, 1020
RseI CAYNNNNRTG 2 cut(s) 273, 693
SacI GAGCTC 1 cut(s) 615
SaqAI TTAA 4 cut(s) 378, 1089, 1118, 1145
SatI GCNGC 5 cut(s) 1013, 1016, 1034, 1317, 1337
Sau3AI GATC 5 cut(s) 63, 277, 396, 702, 1175
Sau96I GGNCC 9 cut(s) 55, 210, 412, 861, 898, 1286, 1426, 1442, 1525
SchI GAGTC 6 cut(s) 169, 297, 573, 662, 797, 1146
ScrFI CCNGG 7 cut(s) 401, 707, 892, 1111, 1112, 1312, 1440
SduI GDGCHC 3 cut(s) 615, 930, 1055
SfaNI GCATC 3 cut(s) 702, 812, 1361
SfcI CTRYAG 4 cut(s) 84, 142, 1218, 1337
SfiI GGCCNNNNNGGCC 1 cut(s) 1424
SfuI TTCGAA 1 cut(s) 188
SinI GGWCC 3 cut(s) 412, 861, 898
SmaI CCCGGG 1 cut(s) 1112
SmiMI CAYNNNNRTG 2 cut(s) 273, 693
SmlI CTYRAG 2 cut(s) 521, 785
SmoI CTYRAG 2 cut(s) 521, 785
Sse9I AATT 7 cut(s) 104, 379, 767, 1103, 1129, 1208, 1281
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 5 cut(s) 1004, 1012, 1015, 1160, 1202
SspMI CTAG 3 cut(s) 906, 932, 1320
SstI GAGCTC 1 cut(s) 615
StuI AGGCCT 1 cut(s) 155
StyD4I CCNGG 7 cut(s) 399, 705, 890, 1109, 1110, 1310, 1438
TaaI ACNGT 3 cut(s) 197, 463, 657
TaiI ACGT 3 cut(s) 83, 1473, 1510
TaqI TCGA 5 cut(s) 188, 286, 577, 615, 720
TasI AATT 7 cut(s) 104, 379, 767, 1103, 1129, 1208, 1281
TatI WGTACW 2 cut(s) 423, 445
TauI GCSGC 2 cut(s) 1015, 1018
TfiI GAWTC 3 cut(s) 283, 965, 1040
Tru1I TTAA 4 cut(s) 378, 1089, 1118, 1145
Tru9I TTAA 4 cut(s) 378, 1089, 1118, 1145
TscAI CASTG 2 cut(s) 468, 758
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 3 cut(s) 1033, 1316, 1336
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 185, 285, 1142
TspGWI ACGGA 2 cut(s) 294, 359
TspMI CCCGGG 1 cut(s) 1110
TspRI CASTG 2 cut(s) 468, 758
Van91I CCANNNNNTGG 1 cut(s) 757
VpaK11BI GGWCC 3 cut(s) 412, 861, 898
VspI ATTAAT 2 cut(s) 1089, 1118
XapI RAATTY 2 cut(s) 104, 1129
XmaI CCCGGG 1 cut(s) 1110
XmiI GTMKAC 1 cut(s) 83
XspI CTAG 3 cut(s) 906, 932, 1320
ZraI GACGTC 2 cut(s) 81, 1508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.