ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 6 - 75 | 4.8e-13 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 10 |
| AccIII | TCCGGA | 1 cut(s) | 78 |
| AciI | CCGC | 1 cut(s) | 10 |
| AclWI | GGATC | 2 cut(s) | 242, 255 |
| AcsI | RAATTY | 1 cut(s) | 104 |
| AcuI | CTGAAG | 1 cut(s) | 180 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 236 |
| AgsI | TTSAA | 1 cut(s) | 154 |
| AlwI | GGATC | 2 cut(s) | 242, 255 |
| Aor13HI | TCCGGA | 1 cut(s) | 78 |
| ApeKI | GCWGC | 1 cut(s) | 181 |
| ApoI | RAATTY | 1 cut(s) | 104 |
| AspS9I | GGNCC | 1 cut(s) | 226 |
| AsuC2I | CCSGG | 2 cut(s) | 252, 308 |
| AvaII | GGWCC | 1 cut(s) | 226 |
| BamHI | GGATCC | 1 cut(s) | 247 |
| BauI | CACGAG | 1 cut(s) | 20 |
| BbsI | GAAGAC | 2 cut(s) | 136, 171 |
| BbvI | GCAGC | 1 cut(s) | 168 |
| BccI | CCATC | 4 cut(s) | 230, 238, 322, 385 |
| BcnI | CCSGG | 2 cut(s) | 252, 308 |
| BfaI | CTAG | 2 cut(s) | 174, 266 |
| BglII | AGATCT | 2 cut(s) | 84, 170 |
| BisI | GCNGC | 1 cut(s) | 182 |
| BlpI | GCTNAGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 1 cut(s) | 183 |
| Bme1390I | CCNGG | 2 cut(s) | 252, 308 |
| Bme18I | GGWCC | 1 cut(s) | 226 |
| BmgT120I | GGNCC | 1 cut(s) | 226 |
| BmiI | GGNNCC | 2 cut(s) | 228, 249 |
| BmrFI | CCNGG | 2 cut(s) | 252, 308 |
| BmsI | GCATC | 1 cut(s) | 81 |
| BpiI | GAAGAC | 2 cut(s) | 136, 171 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 6 |
| BpuMI | CCSGG | 2 cut(s) | 252, 308 |
| BsaJI | CCNNGG | 4 cut(s) | 96, 194, 251, 306 |
| BsaWI | WCCGGW | 1 cut(s) | 78 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 387, 417 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 236 |
| Bse3DI | GCAATG | 1 cut(s) | 318 |
| BseAI | TCCGGA | 1 cut(s) | 78 |
| BseDI | CCNNGG | 4 cut(s) | 96, 194, 251, 306 |
| BseGI | GGATG | 3 cut(s) | 75, 246, 396 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 236 |
| BseMI | GCAATG | 1 cut(s) | 318 |
| BseXI | GCAGC | 1 cut(s) | 168 |
| BsiSI | CCGG | 3 cut(s) | 79, 251, 308 |
| BslFI | GGGAC | 1 cut(s) | 212 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 236 |
| BsmFI | GGGAC | 1 cut(s) | 212 |
| Bsp13I | TCCGGA | 1 cut(s) | 78 |
| Bsp143I | GATC | 4 cut(s) | 84, 111, 170, 247 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 6 |
| BspACI | CCGC | 1 cut(s) | 10 |
| BspEI | TCCGGA | 1 cut(s) | 78 |
| BspLI | GGNNCC | 2 cut(s) | 228, 249 |
| BspPI | GGATC | 2 cut(s) | 242, 255 |
| BsrBI | CCGCTC | 1 cut(s) | 10 |
| BsrDI | GCAATG | 1 cut(s) | 318 |
| BssECI | CCNNGG | 4 cut(s) | 96, 194, 251, 306 |
| BssMI | GATC | 4 cut(s) | 84, 111, 170, 247 |
| BssSI | CACGAG | 1 cut(s) | 20 |
| BssT1I | CCWWGG | 2 cut(s) | 96, 194 |
| Bst2BI | CACGAG | 1 cut(s) | 20 |
| BstDEI | CTNAG | 1 cut(s) | 6 |
| BstF5I | GGATG | 3 cut(s) | 75, 246, 396 |
| BstKTI | GATC | 4 cut(s) | 87, 114, 173, 250 |
| BstMBI | GATC | 4 cut(s) | 84, 111, 170, 247 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 16 |
| BstSCI | CCNGG | 2 cut(s) | 250, 306 |
| BstV1I | GCAGC | 1 cut(s) | 168 |
| BstV2I | GAAGAC | 2 cut(s) | 136, 171 |
| BstX2I | RGATCY | 3 cut(s) | 84, 170, 247 |
| BstYI | RGATCY | 3 cut(s) | 84, 170, 247 |
| BtsCI | GGATG | 3 cut(s) | 75, 246, 396 |
| Cfr13I | GGNCC | 1 cut(s) | 226 |
| CseI | GACGC | 1 cut(s) | 78 |
| CviJI | RGCY | 4 cut(s) | 5, 19, 192, 414 |
| CviKI_1 | RGCY | 4 cut(s) | 5, 19, 192, 414 |
| DdeI | CTNAG | 1 cut(s) | 6 |
| DpnI | GATC | 4 cut(s) | 86, 113, 172, 249 |
| DpnII | GATC | 4 cut(s) | 84, 111, 170, 247 |
| Eco130I | CCWWGG | 2 cut(s) | 96, 194 |
| Eco47I | GGWCC | 1 cut(s) | 226 |
| Eco57I | CTGAAG | 1 cut(s) | 180 |
| EcoT14I | CCWWGG | 2 cut(s) | 96, 194 |
| ErhI | CCWWGG | 2 cut(s) | 96, 194 |
| FaiI | YATR | 1 cut(s) | 204 |
| FaqI | GGGAC | 1 cut(s) | 212 |
| Fnu4HI | GCNGC | 1 cut(s) | 182 |
| FokI | GGATG | 3 cut(s) | 62, 253, 403 |
| Fsp4HI | GCNGC | 1 cut(s) | 182 |
| FspBI | CTAG | 2 cut(s) | 174, 266 |
| GluI | GCNGC | 1 cut(s) | 182 |
| HapII | CCGG | 3 cut(s) | 79, 251, 308 |
| HgaI | GACGC | 1 cut(s) | 78 |
| HincII | GTYRAC | 3 cut(s) | 36, 52, 93 |
| HindII | GTYRAC | 3 cut(s) | 36, 52, 93 |
| HinfI | GANTC | 2 cut(s) | 59, 360 |
| HpaII | CCGG | 3 cut(s) | 79, 251, 308 |
| Hpy166II | GTNNAC | 3 cut(s) | 36, 52, 93 |
| Hpy188I | TCNGA | 3 cut(s) | 68, 133, 160 |
| Hpy188III | TCNNGA | 3 cut(s) | 79, 275, 283 |
| Hpy8I | GTNNAC | 3 cut(s) | 36, 52, 93 |
| Hpy99I | CGWCG | 1 cut(s) | 59 |
| HpyAV | CCTTC | 4 cut(s) | 22, 40, 160, 327 |
| HpyCH4IV | ACGT | 1 cut(s) | 54 |
| HpyCH4V | TGCA | 2 cut(s) | 41, 184 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 16 |
| HpyF3I | CTNAG | 1 cut(s) | 6 |
| HpySE526I | ACGT | 1 cut(s) | 54 |
| Kpn2I | TCCGGA | 1 cut(s) | 78 |
| Kzo9I | GATC | 4 cut(s) | 84, 111, 170, 247 |
| LpnPI | CCDG | 6 cut(s) | 73, 92, 260, 264, 268, 321 |
| Lsp1109I | GCAGC | 1 cut(s) | 168 |
| LweI | GCATC | 1 cut(s) | 81 |
| MaeI | CTAG | 2 cut(s) | 174, 266 |
| MaeII | ACGT | 1 cut(s) | 54 |
| MalI | GATC | 4 cut(s) | 86, 113, 172, 249 |
| MbiI | CCGCTC | 1 cut(s) | 10 |
| MboI | GATC | 4 cut(s) | 84, 111, 170, 247 |
| MboII | GAAGA | 6 cut(s) | 94, 136, 173, 176, 337, 349 |
| MflI | RGATCY | 3 cut(s) | 84, 170, 247 |
| MluCI | AATT | 1 cut(s) | 104 |
| MnlI | CCTC | 2 cut(s) | 94, 129 |
| MroI | TCCGGA | 1 cut(s) | 78 |
| MseI | TTAA | 2 cut(s) | 294, 365 |
| MspI | CCGG | 3 cut(s) | 79, 251, 308 |
| MspR9I | CCNGG | 2 cut(s) | 252, 308 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 16 |
| NciI | CCSGG | 2 cut(s) | 252, 308 |
| NdeII | GATC | 4 cut(s) | 84, 111, 170, 247 |
| NlaIV | GGNNCC | 2 cut(s) | 228, 249 |
| PfeI | GAWTC | 2 cut(s) | 59, 360 |
| PkrI | GCNGC | 1 cut(s) | 183 |
| PspN4I | GGNNCC | 2 cut(s) | 228, 249 |
| PspPI | GGNCC | 1 cut(s) | 226 |
| PsuI | RGATCY | 3 cut(s) | 84, 170, 247 |
| SaqAI | TTAA | 2 cut(s) | 294, 365 |
| SatI | GCNGC | 1 cut(s) | 182 |
| Sau3AI | GATC | 4 cut(s) | 84, 111, 170, 247 |
| Sau96I | GGNCC | 1 cut(s) | 226 |
| ScrFI | CCNGG | 2 cut(s) | 252, 308 |
| SetI | ASST | 5 cut(s) | 33, 51, 57, 140, 190 |
| SfaNI | GCATC | 1 cut(s) | 81 |
| SinI | GGWCC | 1 cut(s) | 226 |
| Sse9I | AATT | 1 cut(s) | 104 |
| SsiI | CCGC | 1 cut(s) | 10 |
| SspMI | CTAG | 2 cut(s) | 174, 266 |
| StyD4I | CCNGG | 2 cut(s) | 250, 306 |
| StyI | CCWWGG | 2 cut(s) | 96, 194 |
| TaiI | ACGT | 1 cut(s) | 57 |
| TaqI | TCGA | 2 cut(s) | 57, 110 |
| TasI | AATT | 1 cut(s) | 104 |
| TfiI | GAWTC | 2 cut(s) | 59, 360 |
| Tru1I | TTAA | 2 cut(s) | 294, 365 |
| Tru9I | TTAA | 2 cut(s) | 294, 365 |
| TseI | GCWGC | 1 cut(s) | 181 |
| TspGWI | ACGGA | 1 cut(s) | 335 |
| VpaK11BI | GGWCC | 1 cut(s) | 226 |
| XapI | RAATTY | 1 cut(s) | 104 |
| XspI | CTAG | 2 cut(s) | 174, 266 |