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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 105, 244, 315 |
| AclWI | GGATC | 2 cut(s) | 176, 613 |
| AcsI | RAATTY | 1 cut(s) | 163 |
| AfaI | GTAC | 2 cut(s) | 651, 694 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 11, 104 |
| AflIII | ACRYGT | 1 cut(s) | 396 |
| AgsI | TTSAA | 1 cut(s) | 163 |
| AjiI | CACGTC | 2 cut(s) | 373, 517 |
| AjnI | CCWGG | 2 cut(s) | 26, 685 |
| AluBI | AGCT | 1 cut(s) | 68 |
| AluI | AGCT | 1 cut(s) | 68 |
| Alw26I | GTCTC | 1 cut(s) | 531 |
| AlwI | GGATC | 2 cut(s) | 176, 613 |
| AoxI | GGCC | 2 cut(s) | 94, 290 |
| ApoI | RAATTY | 1 cut(s) | 163 |
| AspS9I | GGNCC | 5 cut(s) | 24, 95, 290, 318, 719 |
| AsuHPI | GGTGA | 3 cut(s) | 380, 500, 663 |
| AsuII | TTCGAA | 1 cut(s) | 144 |
| AvaII | GGWCC | 3 cut(s) | 24, 318, 719 |
| BauI | CACGAG | 1 cut(s) | 737 |
| BccI | CCATC | 3 cut(s) | 76, 709, 741 |
| BciT130I | CCWGG | 2 cut(s) | 28, 687 |
| BcoDI | GTCTC | 1 cut(s) | 531 |
| BfmI | CTRYAG | 1 cut(s) | 542 |
| Bme1390I | CCNGG | 2 cut(s) | 28, 687 |
| Bme18I | GGWCC | 3 cut(s) | 24, 318, 719 |
| BmgBI | CACGTC | 2 cut(s) | 373, 517 |
| BmgT120I | GGNCC | 5 cut(s) | 24, 95, 290, 318, 719 |
| BmiI | GGNNCC | 2 cut(s) | 319, 720 |
| BmrFI | CCNGG | 2 cut(s) | 28, 687 |
| BmsI | GCATC | 2 cut(s) | 205, 217 |
| Bpu14I | TTCGAA | 1 cut(s) | 144 |
| BsaI | GGTCTC | 1 cut(s) | 531 |
| BsaJI | CCNNGG | 2 cut(s) | 27, 686 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 310, 340 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 11, 104 |
| Bse118I | RCCGGY | 1 cut(s) | 4 |
| Bse3DI | GCAATG | 1 cut(s) | 237 |
| BseBI | CCWGG | 2 cut(s) | 28, 687 |
| BseDI | CCNNGG | 2 cut(s) | 27, 686 |
| BseGI | GGATG | 1 cut(s) | 568 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 11, 104 |
| BseMI | GCAATG | 1 cut(s) | 237 |
| BshFI | GGCC | 2 cut(s) | 96, 292 |
| BsiSI | CCGG | 2 cut(s) | 5, 722 |
| BslFI | GGGAC | 3 cut(s) | 331, 527, 690 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 11, 104 |
| BsmAI | GTCTC | 1 cut(s) | 531 |
| BsmFI | GGGAC | 3 cut(s) | 331, 527, 690 |
| BsmI | GAATGC | 1 cut(s) | 140 |
| BsnI | GGCC | 2 cut(s) | 96, 292 |
| Bso31I | GGTCTC | 1 cut(s) | 531 |
| Bsp119I | TTCGAA | 1 cut(s) | 144 |
| Bsp143I | GATC | 3 cut(s) | 181, 605, 700 |
| BspACI | CCGC | 3 cut(s) | 105, 244, 315 |
| BspANI | GGCC | 2 cut(s) | 96, 292 |
| BspLI | GGNNCC | 2 cut(s) | 319, 720 |
| BspPI | GGATC | 2 cut(s) | 176, 613 |
| BspT104I | TTCGAA | 1 cut(s) | 144 |
| BspTNI | GGTCTC | 1 cut(s) | 531 |
| BsrDI | GCAATG | 1 cut(s) | 237 |
| BsrFI | RCCGGY | 1 cut(s) | 4 |
| BssAI | RCCGGY | 1 cut(s) | 4 |
| BssECI | CCNNGG | 2 cut(s) | 27, 686 |
| BssMI | GATC | 3 cut(s) | 181, 605, 700 |
| BssSI | CACGAG | 1 cut(s) | 737 |
| Bst2BI | CACGAG | 1 cut(s) | 737 |
| Bst2UI | CCWGG | 2 cut(s) | 28, 687 |
| BstBI | TTCGAA | 1 cut(s) | 144 |
| BstC8I | GCNNGC | 1 cut(s) | 194 |
| BstDEI | CTNAG | 1 cut(s) | 582 |
| BstF5I | GGATG | 1 cut(s) | 568 |
| BstKTI | GATC | 3 cut(s) | 184, 608, 703 |
| BstMAI | GTCTC | 1 cut(s) | 531 |
| BstMBI | GATC | 3 cut(s) | 181, 605, 700 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 102 |
| BstNI | CCWGG | 2 cut(s) | 28, 687 |
| BstNSI | RCATGY | 1 cut(s) | 472 |
| BstSCI | CCNGG | 2 cut(s) | 26, 685 |
| BstSFI | CTRYAG | 1 cut(s) | 542 |
| BstX2I | RGATCY | 2 cut(s) | 181, 605 |
| BstYI | RGATCY | 2 cut(s) | 181, 605 |
| BsuRI | GGCC | 2 cut(s) | 96, 292 |
| BtrI | CACGTC | 2 cut(s) | 373, 517 |
| BtsCI | GGATG | 1 cut(s) | 568 |
| Cac8I | GCNNGC | 1 cut(s) | 194 |
| Cfr10I | RCCGGY | 1 cut(s) | 4 |
| Cfr13I | GGNCC | 5 cut(s) | 24, 95, 290, 318, 719 |
| CseI | GACGC | 1 cut(s) | 291 |
| Csp6I | GTAC | 2 cut(s) | 650, 693 |
| CviJI | RGCY | 7 cut(s) | 16, 68, 96, 292, 501, 725, 742 |
| CviKI_1 | RGCY | 7 cut(s) | 16, 68, 96, 292, 501, 725, 742 |
| CviQI | GTAC | 2 cut(s) | 650, 693 |
| DdeI | CTNAG | 1 cut(s) | 582 |
| DpnI | GATC | 3 cut(s) | 183, 607, 702 |
| DpnII | GATC | 3 cut(s) | 181, 605, 700 |
| DraI | TTTAAA | 1 cut(s) | 495 |
| Eco31I | GGTCTC | 1 cut(s) | 531 |
| Eco47I | GGWCC | 3 cut(s) | 24, 318, 719 |
| EcoRI | GAATTC | 1 cut(s) | 163 |
| EcoRII | CCWGG | 2 cut(s) | 26, 685 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 575, 607 |
| FaqI | GGGAC | 3 cut(s) | 331, 527, 690 |
| FauI | CCCGC | 2 cut(s) | 237, 308 |
| FokI | GGATG | 1 cut(s) | 575 |
| HaeIII | GGCC | 2 cut(s) | 96, 292 |
| HapII | CCGG | 2 cut(s) | 5, 722 |
| HgaI | GACGC | 1 cut(s) | 291 |
| HincII | GTYRAC | 1 cut(s) | 264 |
| HindII | GTYRAC | 1 cut(s) | 264 |
| HinfI | GANTC | 1 cut(s) | 682 |
| HpaII | CCGG | 2 cut(s) | 5, 722 |
| HphI | GGTGA | 3 cut(s) | 380, 500, 663 |
| Hpy166II | GTNNAC | 2 cut(s) | 264, 466 |
| Hpy188I | TCNGA | 3 cut(s) | 201, 346, 612 |
| Hpy188III | TCNNGA | 3 cut(s) | 554, 698, 737 |
| Hpy8I | GTNNAC | 2 cut(s) | 264, 466 |
| HpyAV | CCTTC | 5 cut(s) | 56, 86, 140, 454, 475 |
| HpyCH4IV | ACGT | 3 cut(s) | 372, 396, 516 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 102 |
| HpyF3I | CTNAG | 1 cut(s) | 582 |
| HpySE526I | ACGT | 3 cut(s) | 372, 396, 516 |
| Kzo9I | GATC | 3 cut(s) | 181, 605, 700 |
| LmnI | GCTCC | 1 cut(s) | 65 |
| LweI | GCATC | 2 cut(s) | 205, 217 |
| MaeII | ACGT | 3 cut(s) | 372, 396, 516 |
| MaeIII | GTNAC | 1 cut(s) | 368 |
| MalI | GATC | 3 cut(s) | 183, 607, 702 |
| MboI | GATC | 3 cut(s) | 181, 605, 700 |
| MboII | GAAGA | 4 cut(s) | 262, 438, 469, 625 |
| MflI | RGATCY | 2 cut(s) | 181, 605 |
| MluCI | AATT | 5 cut(s) | 157, 163, 212, 310, 336 |
| MlyI | GAGTC | 1 cut(s) | 691 |
| MnlI | CCTC | 6 cut(s) | 25, 43, 79, 111, 346, 718 |
| MseI | TTAA | 3 cut(s) | 215, 339, 494 |
| MspA1I | CMGCKG | 1 cut(s) | 105 |
| MspI | CCGG | 2 cut(s) | 5, 722 |
| MspR9I | CCNGG | 2 cut(s) | 28, 687 |
| Mva1269I | GAATGC | 1 cut(s) | 140 |
| MvaI | CCWGG | 2 cut(s) | 28, 687 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 102 |
| NdeII | GATC | 3 cut(s) | 181, 605, 700 |
| NlaIV | GGNNCC | 2 cut(s) | 319, 720 |
| NmeAIII | GCCGAG | 1 cut(s) | 187 |
| NmuCI | GTSAC | 1 cut(s) | 368 |
| NspI | RCATGY | 1 cut(s) | 472 |
| NspV | TTCGAA | 1 cut(s) | 144 |
| PctI | GAATGC | 1 cut(s) | 140 |
| PleI | GAGTC | 1 cut(s) | 690 |
| PpsI | GAGTC | 1 cut(s) | 690 |
| Psp6I | CCWGG | 2 cut(s) | 26, 685 |
| PspGI | CCWGG | 2 cut(s) | 26, 685 |
| PspN4I | GGNNCC | 2 cut(s) | 319, 720 |
| PspPI | GGNCC | 5 cut(s) | 24, 95, 290, 318, 719 |
| PsuI | RGATCY | 2 cut(s) | 181, 605 |
| RsaI | GTAC | 2 cut(s) | 651, 694 |
| RsaNI | GTAC | 2 cut(s) | 650, 693 |
| SaqAI | TTAA | 3 cut(s) | 215, 339, 494 |
| Sau3AI | GATC | 3 cut(s) | 181, 605, 700 |
| Sau96I | GGNCC | 5 cut(s) | 24, 95, 290, 318, 719 |
| SchI | GAGTC | 1 cut(s) | 691 |
| ScrFI | CCNGG | 2 cut(s) | 28, 687 |
| SfaNI | GCATC | 2 cut(s) | 205, 217 |
| SfcI | CTRYAG | 1 cut(s) | 542 |
| SfuI | TTCGAA | 1 cut(s) | 144 |
| SinI | GGWCC | 3 cut(s) | 24, 318, 719 |
| SmiI | ATTTAAAT | 1 cut(s) | 495 |
| Sse9I | AATT | 5 cut(s) | 157, 163, 212, 310, 336 |
| SsiI | CCGC | 3 cut(s) | 105, 244, 315 |
| StyD4I | CCNGG | 2 cut(s) | 26, 685 |
| SwaI | ATTTAAAT | 1 cut(s) | 495 |
| TaiI | ACGT | 3 cut(s) | 375, 399, 519 |
| TaqI | TCGA | 2 cut(s) | 144, 728 |
| TasI | AATT | 5 cut(s) | 157, 163, 212, 310, 336 |
| TatI | WGTACW | 1 cut(s) | 649 |
| Tru1I | TTAA | 3 cut(s) | 215, 339, 494 |
| Tru9I | TTAA | 3 cut(s) | 215, 339, 494 |
| TseFI | GTSAC | 1 cut(s) | 368 |
| Tsp45I | GTSAC | 1 cut(s) | 368 |
| TspDTI | ATGAA | 2 cut(s) | 57, 465 |
| TspGWI | ACGGA | 1 cut(s) | 700 |
| VpaK11BI | GGWCC | 3 cut(s) | 24, 318, 719 |
| XapI | RAATTY | 1 cut(s) | 163 |
| XceI | RCATGY | 1 cut(s) | 472 |