ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 767 |
| AccBSI | CCGCTC | 1 cut(s) | 794 |
| AccIII | TCCGGA | 1 cut(s) | 624 |
| AciI | CCGC | 6 cut(s) | 47, 127, 136, 212, 794, 831 |
| AclWI | GGATC | 2 cut(s) | 373, 702 |
| AcsI | RAATTY | 1 cut(s) | 374 |
| AfaI | GTAC | 4 cut(s) | 517, 748, 882, 1108 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 227, 529, 579, 614, 631, 671 |
| AgsI | TTSAA | 3 cut(s) | 18, 163, 536 |
| AjnI | CCWGG | 1 cut(s) | 1036 |
| AluBI | AGCT | 4 cut(s) | 384, 448, 806, 1004 |
| AluI | AGCT | 4 cut(s) | 384, 448, 806, 1004 |
| AlwI | GGATC | 2 cut(s) | 373, 702 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 368, 868 |
| Aor13HI | TCCGGA | 1 cut(s) | 624 |
| AoxI | GGCC | 4 cut(s) | 411, 851, 905, 950 |
| ApaI | GGGCCC | 1 cut(s) | 954 |
| ApeKI | GCWGC | 6 cut(s) | 215, 381, 677, 1004, 1094, 1097 |
| ApoI | RAATTY | 1 cut(s) | 374 |
| AspLEI | GCGC | 1 cut(s) | 430 |
| AspS9I | GGNCC | 6 cut(s) | 622, 847, 905, 950, 951, 1040 |
| AsuHPI | GGTGA | 1 cut(s) | 654 |
| AsuNHI | GCTAGC | 1 cut(s) | 185 |
| AvaII | GGWCC | 3 cut(s) | 622, 847, 1040 |
| AxyI | CCTNAGG | 1 cut(s) | 525 |
| BaeGI | GKGCMC | 1 cut(s) | 954 |
| BanI | GGYRCC | 1 cut(s) | 767 |
| BanII | GRGCYC | 1 cut(s) | 954 |
| BbvI | GCAGC | 6 cut(s) | 202, 393, 689, 991, 1081, 1084 |
| BccI | CCATC | 2 cut(s) | 673, 793 |
| BceAI | ACGGC | 2 cut(s) | 755, 979 |
| BciT130I | CCWGG | 1 cut(s) | 1038 |
| BfaI | CTAG | 2 cut(s) | 186, 510 |
| BglII | AGATCT | 1 cut(s) | 142 |
| BisI | GCNGC | 8 cut(s) | 213, 216, 382, 678, 795, 1005, 1095, 1098 |
| BlsI | GCNGC | 8 cut(s) | 214, 217, 383, 679, 796, 1006, 1096, 1099 |
| Bme1390I | CCNGG | 1 cut(s) | 1038 |
| Bme18I | GGWCC | 3 cut(s) | 622, 847, 1040 |
| BmgT120I | GGNCC | 6 cut(s) | 622, 847, 905, 950, 951, 1040 |
| BmiI | GGNNCC | 4 cut(s) | 290, 597, 769, 952 |
| BmrFI | CCNGG | 1 cut(s) | 1038 |
| BmsI | GCATC | 4 cut(s) | 448, 640, 662, 1051 |
| BmtI | GCTAGC | 1 cut(s) | 189 |
| BpmI | CTGGAG | 2 cut(s) | 582, 890 |
| Bpu10I | CCTNAGC | 1 cut(s) | 90 |
| BsaWI | WCCGGW | 1 cut(s) | 624 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 504, 534 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 227, 529, 579, 614, 631, 671 |
| Bse118I | RCCGGY | 2 cut(s) | 770, 849 |
| Bse1I | ACTGG | 1 cut(s) | 873 |
| Bse21I | CCTNAGG | 1 cut(s) | 525 |
| BseAI | TCCGGA | 1 cut(s) | 624 |
| BseBI | CCWGG | 1 cut(s) | 1038 |
| BseGI | GGATG | 7 cut(s) | 40, 150, 316, 649, 653, 655, 1066 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 227, 529, 579, 614, 631, 671 |
| BseMII | CTCAG | 1 cut(s) | 516 |
| BseNI | ACTGG | 1 cut(s) | 873 |
| BseRI | GAGGAG | 2 cut(s) | 137, 1092 |
| BseSI | GKGCMC | 1 cut(s) | 954 |
| BseXI | GCAGC | 6 cut(s) | 202, 393, 689, 991, 1081, 1084 |
| BseYI | CCCAGC | 1 cut(s) | 806 |
| BsgI | GTGCAG | 2 cut(s) | 696, 795 |
| BshFI | GGCC | 4 cut(s) | 413, 853, 907, 952 |
| BshNI | GGYRCC | 1 cut(s) | 767 |
| BsiSI | CCGG | 4 cut(s) | 228, 625, 771, 850 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 227, 529, 579, 614, 631, 671 |
| BsmI | GAATGC | 1 cut(s) | 733 |
| BsnI | GGCC | 4 cut(s) | 413, 853, 907, 952 |
| Bsp120I | GGGCCC | 1 cut(s) | 950 |
| Bsp1286I | GDGCHC | 1 cut(s) | 954 |
| Bsp13I | TCCGGA | 1 cut(s) | 624 |
| Bsp1407I | TGTACA | 1 cut(s) | 880 |
| Bsp143I | GATC | 4 cut(s) | 142, 365, 694, 957 |
| BspACI | CCGC | 6 cut(s) | 47, 127, 136, 212, 794, 831 |
| BspANI | GGCC | 4 cut(s) | 413, 853, 907, 952 |
| BspCNI | CTCAG | 1 cut(s) | 517 |
| BspEI | TCCGGA | 1 cut(s) | 624 |
| BspHI | TCATGA | 1 cut(s) | 63 |
| BspLI | GGNNCC | 4 cut(s) | 290, 597, 769, 952 |
| BspOI | GCTAGC | 1 cut(s) | 189 |
| BspPI | GGATC | 2 cut(s) | 373, 702 |
| BspT107I | GGYRCC | 1 cut(s) | 767 |
| BsrBI | CCGCTC | 1 cut(s) | 794 |
| BsrFI | RCCGGY | 2 cut(s) | 770, 849 |
| BsrGI | TGTACA | 1 cut(s) | 880 |
| BsrI | ACTGG | 1 cut(s) | 873 |
| BssAI | RCCGGY | 2 cut(s) | 770, 849 |
| BssMI | GATC | 4 cut(s) | 142, 365, 694, 957 |
| Bst2UI | CCWGG | 1 cut(s) | 1038 |
| Bst4CI | ACNGT | 2 cut(s) | 746, 751 |
| Bst6I | CTCTTC | 3 cut(s) | 158, 320, 630 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 458 |
| BstAUI | TGTACA | 1 cut(s) | 880 |
| BstC8I | GCNNGC | 3 cut(s) | 187, 450, 855 |
| BstDEI | CTNAG | 2 cut(s) | 90, 525 |
| BstF5I | GGATG | 7 cut(s) | 40, 150, 316, 649, 653, 655, 1066 |
| BstHHI | GCGC | 1 cut(s) | 430 |
| BstKTI | GATC | 4 cut(s) | 145, 368, 697, 960 |
| BstMBI | GATC | 4 cut(s) | 142, 365, 694, 957 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 135, 224, 458, 494, 686, 803 |
| BstNI | CCWGG | 1 cut(s) | 1038 |
| BstNSI | RCATGY | 1 cut(s) | 940 |
| BstSCI | CCNGG | 1 cut(s) | 1036 |
| BstSLI | GKGCMC | 1 cut(s) | 954 |
| BstV1I | GCAGC | 6 cut(s) | 202, 393, 689, 991, 1081, 1084 |
| BstX2I | RGATCY | 2 cut(s) | 142, 365 |
| BstYI | RGATCY | 2 cut(s) | 142, 365 |
| Bsu36I | CCTNAGG | 1 cut(s) | 525 |
| BsuRI | GGCC | 4 cut(s) | 413, 853, 907, 952 |
| BtgZI | GCGATG | 1 cut(s) | 812 |
| BtsCI | GGATG | 7 cut(s) | 40, 150, 316, 649, 653, 655, 1066 |
| BtsI | GCAGTG | 1 cut(s) | 696 |
| BtsIMutI | CAGTG | 3 cut(s) | 696, 742, 866 |
| Cac8I | GCNNGC | 3 cut(s) | 187, 450, 855 |
| CaiI | CAGNNNCTG | 2 cut(s) | 368, 868 |
| CciI | TCATGA | 1 cut(s) | 63 |
| CfoI | GCGC | 1 cut(s) | 430 |
| Cfr10I | RCCGGY | 2 cut(s) | 770, 849 |
| Cfr13I | GGNCC | 6 cut(s) | 622, 847, 905, 950, 951, 1040 |
| CpoI | CGGWCCG | 1 cut(s) | 847 |
| Csp6I | GTAC | 4 cut(s) | 516, 747, 881, 1107 |
| CspI | CGGWCCG | 1 cut(s) | 847 |
| CviAII | CATG | 5 cut(s) | 64, 307, 551, 937, 944 |
| CviQI | GTAC | 4 cut(s) | 516, 747, 881, 1107 |
| DdeI | CTNAG | 2 cut(s) | 90, 525 |
| DpnI | GATC | 4 cut(s) | 144, 367, 696, 959 |
| DpnII | GATC | 4 cut(s) | 142, 365, 694, 957 |
| DraI | TTTAAA | 1 cut(s) | 988 |
| Eam1104I | CTCTTC | 3 cut(s) | 158, 320, 630 |
| EarI | CTCTTC | 3 cut(s) | 158, 320, 630 |
| Eco24I | GRGCYC | 1 cut(s) | 954 |
| Eco47I | GGWCC | 3 cut(s) | 622, 847, 1040 |
| Eco81I | CCTNAGG | 1 cut(s) | 525 |
| EcoO109I | RGGNCCY | 1 cut(s) | 950 |
| EcoRII | CCWGG | 1 cut(s) | 1036 |
| EcoT22I | ATGCAT | 2 cut(s) | 407, 655 |
| EcoT38I | GRGCYC | 1 cut(s) | 954 |
| FaeI | CATG | 5 cut(s) | 67, 310, 554, 940, 947 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 83, 115 |
| FatI | CATG | 5 cut(s) | 63, 306, 550, 936, 943 |
| FauNDI | CATATG | 1 cut(s) | 454 |
| Fnu4HI | GCNGC | 8 cut(s) | 213, 216, 382, 678, 795, 1005, 1095, 1098 |
| FokI | GGATG | 7 cut(s) | 47, 137, 323, 640, 656, 662, 1073 |
| FriOI | GRGCYC | 1 cut(s) | 954 |
| Fsp4HI | GCNGC | 8 cut(s) | 213, 216, 382, 678, 795, 1005, 1095, 1098 |
| FspBI | CTAG | 2 cut(s) | 186, 510 |
| GlaI | GCGC | 1 cut(s) | 429 |
| GluI | GCNGC | 8 cut(s) | 213, 216, 382, 678, 795, 1005, 1095, 1098 |
| GsaI | CCCAGC | 1 cut(s) | 810 |
| GsuI | CTGGAG | 2 cut(s) | 582, 890 |
| HaeIII | GGCC | 4 cut(s) | 413, 853, 907, 952 |
| HapII | CCGG | 4 cut(s) | 228, 625, 771, 850 |
| HhaI | GCGC | 1 cut(s) | 430 |
| Hin1II | CATG | 5 cut(s) | 67, 310, 554, 940, 947 |
| Hin6I | GCGC | 1 cut(s) | 428 |
| HinP1I | GCGC | 1 cut(s) | 428 |
| HincII | GTYRAC | 1 cut(s) | 358 |
| HindII | GTYRAC | 1 cut(s) | 358 |
| HinfI | GANTC | 2 cut(s) | 240, 506 |
| HpaI | GTTAAC | 1 cut(s) | 358 |
| HpaII | CCGG | 4 cut(s) | 228, 625, 771, 850 |
| HphI | GGTGA | 1 cut(s) | 654 |
| Hpy166II | GTNNAC | 5 cut(s) | 120, 358, 560, 883, 1014 |
| Hpy188I | TCNGA | 4 cut(s) | 222, 370, 670, 847 |
| Hpy188III | TCNNGA | 5 cut(s) | 64, 510, 599, 625, 698 |
| Hpy8I | GTNNAC | 5 cut(s) | 120, 358, 560, 883, 1014 |
| HpyAV | CCTTC | 7 cut(s) | 32, 61, 262, 473, 530, 614, 634 |
| HpyCH4III | ACNGT | 2 cut(s) | 746, 751 |
| HpyCH4IV | ACGT | 2 cut(s) | 514, 562 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 135, 224, 458, 494, 686, 803 |
| HpyF3I | CTNAG | 2 cut(s) | 90, 525 |
| HpySE526I | ACGT | 2 cut(s) | 514, 562 |
| Hsp92II | CATG | 5 cut(s) | 67, 310, 554, 940, 947 |
| HspAI | GCGC | 1 cut(s) | 428 |
| Kpn2I | TCCGGA | 1 cut(s) | 624 |
| KspAI | GTTAAC | 1 cut(s) | 358 |
| Kzo9I | GATC | 4 cut(s) | 142, 365, 694, 957 |
| LmnI | GCTCC | 6 cut(s) | 223, 445, 601, 791, 1039, 1105 |
| Lsp1109I | GCAGC | 6 cut(s) | 202, 393, 689, 991, 1081, 1084 |
| LweI | GCATC | 4 cut(s) | 448, 640, 662, 1051 |
| MaeI | CTAG | 2 cut(s) | 186, 510 |
| MaeII | ACGT | 2 cut(s) | 514, 562 |
| MaeIII | GTNAC | 1 cut(s) | 707 |
| MalI | GATC | 4 cut(s) | 144, 367, 696, 959 |
| MbiI | CCGCTC | 1 cut(s) | 794 |
| MboI | GATC | 4 cut(s) | 142, 365, 694, 957 |
| MboII | GAAGA | 5 cut(s) | 91, 175, 337, 561, 647 |
| MfeI | CAATTG | 1 cut(s) | 1055 |
| MflI | RGATCY | 2 cut(s) | 142, 365 |
| MhlI | GDGCHC | 1 cut(s) | 954 |
| MluCI | AATT | 7 cut(s) | 23, 74, 374, 419, 720, 969, 1055 |
| MmeI | TCCRAC | 1 cut(s) | 978 |
| Mph1103I | ATGCAT | 2 cut(s) | 407, 655 |
| MroI | TCCGGA | 1 cut(s) | 624 |
| MseI | TTAA | 4 cut(s) | 284, 357, 468, 987 |
| MspI | CCGG | 4 cut(s) | 228, 625, 771, 850 |
| MspR9I | CCNGG | 1 cut(s) | 1038 |
| MunI | CAATTG | 1 cut(s) | 1055 |
| Mva1269I | GAATGC | 1 cut(s) | 733 |
| MvaI | CCWGG | 1 cut(s) | 1038 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 135, 224, 458, 494, 686, 803 |
| NdeI | CATATG | 1 cut(s) | 454 |
| NdeII | GATC | 4 cut(s) | 142, 365, 694, 957 |
| NheI | GCTAGC | 1 cut(s) | 185 |
| NlaIII | CATG | 5 cut(s) | 67, 310, 554, 940, 947 |
| NlaIV | GGNNCC | 4 cut(s) | 290, 597, 769, 952 |
| NmeAIII | GCCGAG | 1 cut(s) | 456 |
| NmuCI | GTSAC | 1 cut(s) | 707 |
| NsiI | ATGCAT | 2 cut(s) | 407, 655 |
| NspI | RCATGY | 1 cut(s) | 940 |
| PagI | TCATGA | 1 cut(s) | 63 |
| PctI | GAATGC | 1 cut(s) | 733 |
| PfeI | GAWTC | 2 cut(s) | 240, 506 |
| PkrI | GCNGC | 8 cut(s) | 214, 217, 383, 679, 796, 1006, 1096, 1099 |
| Psp6I | CCWGG | 1 cut(s) | 1036 |
| PspFI | CCCAGC | 1 cut(s) | 806 |
| PspGI | CCWGG | 1 cut(s) | 1036 |
| PspN4I | GGNNCC | 4 cut(s) | 290, 597, 769, 952 |
| PspOMI | GGGCCC | 1 cut(s) | 950 |
| PspPI | GGNCC | 6 cut(s) | 622, 847, 905, 950, 951, 1040 |
| PstNI | CAGNNNCTG | 2 cut(s) | 368, 868 |
| PsuI | RGATCY | 2 cut(s) | 142, 365 |
| RsaI | GTAC | 4 cut(s) | 517, 748, 882, 1108 |
| RsaNI | GTAC | 4 cut(s) | 516, 747, 881, 1107 |
| Rsr2I | CGGWCCG | 1 cut(s) | 847 |
| RsrII | CGGWCCG | 1 cut(s) | 847 |
| SaqAI | TTAA | 4 cut(s) | 284, 357, 468, 987 |
| SatI | GCNGC | 8 cut(s) | 213, 216, 382, 678, 795, 1005, 1095, 1098 |
| Sau3AI | GATC | 4 cut(s) | 142, 365, 694, 957 |
| Sau96I | GGNCC | 6 cut(s) | 622, 847, 905, 950, 951, 1040 |
| ScrFI | CCNGG | 1 cut(s) | 1038 |
| SduI | GDGCHC | 1 cut(s) | 954 |
| SfaNI | GCATC | 4 cut(s) | 448, 640, 662, 1051 |
| SinI | GGWCC | 3 cut(s) | 622, 847, 1040 |
| Sse9I | AATT | 7 cut(s) | 23, 74, 374, 419, 720, 969, 1055 |
| SsiI | CCGC | 6 cut(s) | 47, 127, 136, 212, 794, 831 |
| SspMI | CTAG | 2 cut(s) | 186, 510 |
| StyD4I | CCNGG | 1 cut(s) | 1036 |
| TaaI | ACNGT | 2 cut(s) | 746, 751 |
| TaiI | ACGT | 2 cut(s) | 517, 565 |
| TaqI | TCGA | 4 cut(s) | 6, 238, 898, 960 |
| TasI | AATT | 7 cut(s) | 23, 74, 374, 419, 720, 969, 1055 |
| TatI | WGTACW | 1 cut(s) | 880 |
| TauI | GCSGC | 2 cut(s) | 215, 797 |
| TfiI | GAWTC | 2 cut(s) | 240, 506 |
| Tru1I | TTAA | 4 cut(s) | 284, 357, 468, 987 |
| Tru9I | TTAA | 4 cut(s) | 284, 357, 468, 987 |
| TscAI | CASTG | 3 cut(s) | 696, 749, 873 |
| TseFI | GTSAC | 1 cut(s) | 707 |
| TseI | GCWGC | 6 cut(s) | 215, 381, 677, 1004, 1094, 1097 |
| Tsp45I | GTSAC | 1 cut(s) | 707 |
| TspDTI | ATGAA | 5 cut(s) | 51, 80, 91, 209, 932 |
| TspRI | CASTG | 3 cut(s) | 696, 749, 873 |
| VpaK11BI | GGWCC | 3 cut(s) | 622, 847, 1040 |
| XapI | RAATTY | 1 cut(s) | 374 |
| XbaI | TCTAGA | 1 cut(s) | 509 |
| XceI | RCATGY | 1 cut(s) | 940 |
| XspI | CTAG | 2 cut(s) | 186, 510 |
| Zsp2I | ATGCAT | 2 cut(s) | 407, 655 |