ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1048 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1059, 1109 |
| AccII | CGCG | 1 cut(s) | 1071 |
| AciI | CCGC | 5 cut(s) | 96, 160, 343, 510, 1143 |
| AclI | AACGTT | 1 cut(s) | 1362 |
| AclWI | GGATC | 1 cut(s) | 1421 |
| AcsI | RAATTY | 4 cut(s) | 182, 253, 366, 493 |
| AcuI | CTGAAG | 4 cut(s) | 156, 607, 810, 909 |
| AcyI | GRCGYC | 1 cut(s) | 683 |
| AfaI | GTAC | 4 cut(s) | 338, 571, 856, 1423 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 840, 1059, 1109 |
| AgsI | TTSAA | 9 cut(s) | 13, 231, 679, 1152, 1319, 1382, 1405, 1508, 1514 |
| AjnI | CCWGG | 6 cut(s) | 170, 722, 987, 1102, 1165, 1549 |
| AluBI | AGCT | 1 cut(s) | 1286 |
| AluI | AGCT | 1 cut(s) | 1286 |
| Alw26I | GTCTC | 2 cut(s) | 950, 1345 |
| AlwI | GGATC | 1 cut(s) | 1421 |
| AoxI | GGCC | 4 cut(s) | 15, 141, 1100, 1123 |
| ApeKI | GCWGC | 3 cut(s) | 36, 165, 1286 |
| ApoI | RAATTY | 4 cut(s) | 182, 253, 366, 493 |
| AseI | ATTAAT | 1 cut(s) | 447 |
| AspLEI | GCGC | 2 cut(s) | 840, 1073 |
| AspS9I | GGNCC | 7 cut(s) | 6, 520, 672, 754, 1041, 1100, 1123 |
| AsuHPI | GGTGA | 2 cut(s) | 980, 1565 |
| AsuII | TTCGAA | 1 cut(s) | 1004 |
| AvaII | GGWCC | 5 cut(s) | 6, 520, 672, 754, 1041 |
| AxyI | CCTNAGG | 1 cut(s) | 1523 |
| BaeGI | GKGCMC | 1 cut(s) | 952 |
| BanII | GRGCYC | 2 cut(s) | 285, 657 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1414, 1446 |
| BauI | CACGAG | 1 cut(s) | 765 |
| BbsI | GAAGAC | 2 cut(s) | 36, 387 |
| BbvI | GCAGC | 3 cut(s) | 48, 152, 1273 |
| BccI | CCATC | 8 cut(s) | 101, 356, 733, 910, 989, 1255, 1331, 1553 |
| BceAI | ACGGC | 1 cut(s) | 2 |
| BciT130I | CCWGG | 6 cut(s) | 172, 724, 989, 1104, 1167, 1551 |
| BciVI | GTATCC | 1 cut(s) | 1545 |
| BcoDI | GTCTC | 2 cut(s) | 950, 1345 |
| BfaI | CTAG | 1 cut(s) | 1500 |
| BfoI | RGCGCY | 1 cut(s) | 841 |
| BfuI | GTATCC | 1 cut(s) | 1545 |
| BisI | GCNGC | 3 cut(s) | 37, 166, 1287 |
| BlsI | GCNGC | 3 cut(s) | 38, 167, 1288 |
| Bme1390I | CCNGG | 6 cut(s) | 172, 724, 989, 1104, 1167, 1551 |
| Bme18I | GGWCC | 5 cut(s) | 6, 520, 672, 754, 1041 |
| BmgT120I | GGNCC | 7 cut(s) | 6, 520, 672, 754, 1041, 1100, 1123 |
| BmiI | GGNNCC | 5 cut(s) | 7, 282, 654, 1042, 1267 |
| BmrFI | CCNGG | 6 cut(s) | 172, 724, 989, 1104, 1167, 1551 |
| BmsI | GCATC | 3 cut(s) | 196, 420, 1228 |
| BpiI | GAAGAC | 2 cut(s) | 36, 387 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 116, 148 |
| Bpu14I | TTCGAA | 1 cut(s) | 1004 |
| BpuEI | CTTGAG | 3 cut(s) | 406, 419, 616 |
| BsaHI | GRCGYC | 1 cut(s) | 683 |
| BsaJI | CCNNGG | 5 cut(s) | 170, 328, 723, 988, 1549 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 835, 865 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 840, 1059, 1109 |
| Bse1I | ACTGG | 1 cut(s) | 580 |
| Bse21I | CCTNAGG | 1 cut(s) | 1523 |
| Bse3DI | GCAATG | 1 cut(s) | 62 |
| BseBI | CCWGG | 6 cut(s) | 172, 724, 989, 1104, 1167, 1551 |
| BseDI | CCNNGG | 5 cut(s) | 170, 328, 723, 988, 1549 |
| BseGI | GGATG | 7 cut(s) | 47, 112, 367, 435, 817, 1000, 1468 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 840, 1059, 1109 |
| BseMI | GCAATG | 1 cut(s) | 62 |
| BseMII | CTCAG | 1 cut(s) | 38 |
| BseNI | ACTGG | 1 cut(s) | 580 |
| BseRI | GAGGAG | 1 cut(s) | 314 |
| BseSI | GKGCMC | 1 cut(s) | 952 |
| BseXI | GCAGC | 3 cut(s) | 48, 152, 1273 |
| BseYI | CCCAGC | 1 cut(s) | 923 |
| Bsh1236I | CGCG | 1 cut(s) | 1071 |
| BshFI | GGCC | 4 cut(s) | 17, 143, 1102, 1125 |
| BsiSI | CCGG | 1 cut(s) | 841 |
| BslFI | GGGAC | 2 cut(s) | 943, 1054 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 840, 1059, 1109 |
| BsmAI | GTCTC | 2 cut(s) | 950, 1345 |
| BsmFI | GGGAC | 2 cut(s) | 943, 1054 |
| BsmI | GAATGC | 1 cut(s) | 1569 |
| BsnI | GGCC | 4 cut(s) | 17, 143, 1102, 1125 |
| Bsp119I | TTCGAA | 1 cut(s) | 1004 |
| Bsp1286I | GDGCHC | 3 cut(s) | 285, 657, 952 |
| Bsp143I | GATC | 2 cut(s) | 303, 1426 |
| BspACI | CCGC | 5 cut(s) | 96, 160, 343, 510, 1143 |
| BspANI | GGCC | 4 cut(s) | 17, 143, 1102, 1125 |
| BspCNI | CTCAG | 1 cut(s) | 37 |
| BspFNI | CGCG | 1 cut(s) | 1071 |
| BspHI | TCATGA | 2 cut(s) | 1201, 1279 |
| BspLI | GGNNCC | 5 cut(s) | 7, 282, 654, 1042, 1267 |
| BspPI | GGATC | 1 cut(s) | 1421 |
| BspT104I | TTCGAA | 1 cut(s) | 1004 |
| BsrDI | GCAATG | 1 cut(s) | 62 |
| BsrI | ACTGG | 1 cut(s) | 580 |
| BssECI | CCNNGG | 5 cut(s) | 170, 328, 723, 988, 1549 |
| BssMI | GATC | 2 cut(s) | 303, 1426 |
| BssNI | GRCGYC | 1 cut(s) | 683 |
| BssSI | CACGAG | 1 cut(s) | 765 |
| BssT1I | CCWWGG | 1 cut(s) | 328 |
| Bst2BI | CACGAG | 1 cut(s) | 765 |
| Bst2UI | CCWGG | 6 cut(s) | 172, 724, 989, 1104, 1167, 1551 |
| Bst4CI | ACNGT | 3 cut(s) | 1225, 1258, 1459 |
| Bst6I | CTCTTC | 1 cut(s) | 132 |
| BstACI | GRCGYC | 1 cut(s) | 683 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1247 |
| BstBI | TTCGAA | 1 cut(s) | 1004 |
| BstC8I | GCNNGC | 2 cut(s) | 1069, 1569 |
| BstDEI | CTNAG | 3 cut(s) | 24, 1178, 1523 |
| BstF5I | GGATG | 7 cut(s) | 47, 112, 367, 435, 817, 1000, 1468 |
| BstFNI | CGCG | 1 cut(s) | 1071 |
| BstH2I | RGCGCY | 1 cut(s) | 841 |
| BstHHI | GCGC | 2 cut(s) | 840, 1073 |
| BstKTI | GATC | 2 cut(s) | 306, 1429 |
| BstMAI | GTCTC | 2 cut(s) | 950, 1345 |
| BstMBI | GATC | 2 cut(s) | 303, 1426 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1247 |
| BstNI | CCWGG | 6 cut(s) | 172, 724, 989, 1104, 1167, 1551 |
| BstSCI | CCNGG | 6 cut(s) | 170, 722, 987, 1102, 1165, 1549 |
| BstSLI | GKGCMC | 1 cut(s) | 952 |
| BstUI | CGCG | 1 cut(s) | 1071 |
| BstV1I | GCAGC | 3 cut(s) | 48, 152, 1273 |
| BstV2I | GAAGAC | 2 cut(s) | 36, 387 |
| BstX2I | RGATCY | 1 cut(s) | 1426 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 69, 1037 |
| BstYI | RGATCY | 1 cut(s) | 1426 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1523 |
| BsuI | GTATCC | 1 cut(s) | 1545 |
| BsuRI | GGCC | 4 cut(s) | 17, 143, 1102, 1125 |
| BtsCI | GGATG | 7 cut(s) | 47, 112, 367, 435, 817, 1000, 1468 |
| Cac8I | GCNNGC | 2 cut(s) | 1069, 1569 |
| CciI | TCATGA | 2 cut(s) | 1201, 1279 |
| CfoI | GCGC | 2 cut(s) | 840, 1073 |
| Cfr13I | GGNCC | 7 cut(s) | 6, 520, 672, 754, 1041, 1100, 1123 |
| CseI | GACGC | 1 cut(s) | 672 |
| CsiI | ACCWGGT | 1 cut(s) | 1165 |
| Csp6I | GTAC | 4 cut(s) | 337, 570, 855, 1422 |
| CviQI | GTAC | 4 cut(s) | 337, 570, 855, 1422 |
| DdeI | CTNAG | 3 cut(s) | 24, 1178, 1523 |
| DpnI | GATC | 2 cut(s) | 305, 1428 |
| DpnII | GATC | 2 cut(s) | 303, 1426 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1048 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1048 |
| Eam1104I | CTCTTC | 1 cut(s) | 132 |
| EarI | CTCTTC | 1 cut(s) | 132 |
| Eco130I | CCWWGG | 1 cut(s) | 328 |
| Eco24I | GRGCYC | 2 cut(s) | 285, 657 |
| Eco32I | GATATC | 1 cut(s) | 1095 |
| Eco47I | GGWCC | 5 cut(s) | 6, 520, 672, 754, 1041 |
| Eco57I | CTGAAG | 4 cut(s) | 156, 607, 810, 909 |
| Eco81I | CCTNAGG | 1 cut(s) | 1523 |
| EcoO109I | RGGNCCY | 1 cut(s) | 6 |
| EcoRII | CCWGG | 6 cut(s) | 170, 722, 987, 1102, 1165, 1549 |
| EcoRV | GATATC | 1 cut(s) | 1095 |
| EcoT14I | CCWWGG | 1 cut(s) | 328 |
| EcoT22I | ATGCAT | 1 cut(s) | 800 |
| EcoT38I | GRGCYC | 2 cut(s) | 285, 657 |
| ErhI | CCWWGG | 1 cut(s) | 328 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1506, 1538 |
| FaqI | GGGAC | 2 cut(s) | 943, 1054 |
| FauI | CCCGC | 2 cut(s) | 153, 1136 |
| Fnu4HI | GCNGC | 3 cut(s) | 37, 166, 1287 |
| FokI | GGATG | 7 cut(s) | 34, 119, 374, 442, 824, 1007, 1475 |
| FriOI | GRGCYC | 2 cut(s) | 285, 657 |
| Fsp4HI | GCNGC | 3 cut(s) | 37, 166, 1287 |
| FspBI | CTAG | 1 cut(s) | 1500 |
| GlaI | GCGC | 2 cut(s) | 839, 1072 |
| GluI | GCNGC | 3 cut(s) | 37, 166, 1287 |
| GsaI | CCCAGC | 1 cut(s) | 927 |
| HaeII | RGCGCY | 1 cut(s) | 841 |
| HaeIII | GGCC | 4 cut(s) | 17, 143, 1102, 1125 |
| HapII | CCGG | 1 cut(s) | 841 |
| HgaI | GACGC | 1 cut(s) | 672 |
| HhaI | GCGC | 2 cut(s) | 840, 1073 |
| Hin1I | GRCGYC | 1 cut(s) | 683 |
| Hin6I | GCGC | 2 cut(s) | 838, 1071 |
| HinP1I | GCGC | 2 cut(s) | 838, 1071 |
| HincII | GTYRAC | 1 cut(s) | 870 |
| HindII | GTYRAC | 1 cut(s) | 870 |
| HinfI | GANTC | 9 cut(s) | 154, 439, 565, 761, 773, 1079, 1217, 1382, 1466 |
| HpaII | CCGG | 1 cut(s) | 841 |
| HphI | GGTGA | 2 cut(s) | 980, 1565 |
| Hpy166II | GTNNAC | 1 cut(s) | 870 |
| Hpy188III | TCNNGA | 4 cut(s) | 436, 595, 1202, 1280 |
| Hpy8I | GTNNAC | 1 cut(s) | 870 |
| Hpy99I | CGWCG | 1 cut(s) | 688 |
| HpyAV | CCTTC | 9 cut(s) | 19, 237, 605, 673, 1016, 1296, 1313, 1440, 1504 |
| HpyCH4III | ACNGT | 3 cut(s) | 1225, 1258, 1459 |
| HpyCH4IV | ACGT | 3 cut(s) | 339, 857, 1362 |
| HpyCH4V | TGCA | 6 cut(s) | 209, 543, 798, 862, 1241, 1488 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1247 |
| HpyF3I | CTNAG | 3 cut(s) | 24, 1178, 1523 |
| HpySE526I | ACGT | 3 cut(s) | 339, 857, 1362 |
| Hsp92I | GRCGYC | 1 cut(s) | 683 |
| HspAI | GCGC | 2 cut(s) | 838, 1071 |
| Kzo9I | GATC | 2 cut(s) | 303, 1426 |
| LmnI | GCTCC | 2 cut(s) | 280, 652 |
| Lsp1109I | GCAGC | 3 cut(s) | 48, 152, 1273 |
| LweI | GCATC | 3 cut(s) | 196, 420, 1228 |
| MabI | ACCWGGT | 1 cut(s) | 1165 |
| MaeI | CTAG | 1 cut(s) | 1500 |
| MaeII | ACGT | 3 cut(s) | 339, 857, 1362 |
| MaeIII | GTNAC | 4 cut(s) | 320, 820, 829, 1225 |
| MalI | GATC | 2 cut(s) | 305, 1428 |
| MboI | GATC | 2 cut(s) | 303, 1426 |
| MflI | RGATCY | 1 cut(s) | 1426 |
| MhlI | GDGCHC | 3 cut(s) | 285, 657, 952 |
| MlyI | GAGTC | 3 cut(s) | 1088, 1211, 1460 |
| MmeI | TCCRAC | 6 cut(s) | 384, 666, 688, 1054, 1194, 1348 |
| Mph1103I | ATGCAT | 1 cut(s) | 800 |
| MseI | TTAA | 2 cut(s) | 447, 1448 |
| MslI | CAYNNNNRTG | 2 cut(s) | 149, 1259 |
| MspI | CCGG | 1 cut(s) | 841 |
| MspR9I | CCNGG | 6 cut(s) | 172, 724, 989, 1104, 1167, 1551 |
| Mva1269I | GAATGC | 1 cut(s) | 1569 |
| MvaI | CCWGG | 6 cut(s) | 172, 724, 989, 1104, 1167, 1551 |
| MvnI | CGCG | 1 cut(s) | 1071 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1247 |
| NdeII | GATC | 2 cut(s) | 303, 1426 |
| NlaIV | GGNNCC | 5 cut(s) | 7, 282, 654, 1042, 1267 |
| NmuCI | GTSAC | 1 cut(s) | 820 |
| NsiI | ATGCAT | 1 cut(s) | 800 |
| NspV | TTCGAA | 1 cut(s) | 1004 |
| PagI | TCATGA | 2 cut(s) | 1201, 1279 |
| PctI | GAATGC | 1 cut(s) | 1569 |
| PfeI | GAWTC | 6 cut(s) | 154, 439, 565, 761, 773, 1382 |
| PflFI | GACNNNGTC | 2 cut(s) | 670, 692 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1059, 1109 |
| PkrI | GCNGC | 3 cut(s) | 38, 167, 1288 |
| PleI | GAGTC | 3 cut(s) | 1087, 1211, 1460 |
| PpsI | GAGTC | 3 cut(s) | 1087, 1211, 1460 |
| PpuMI | RGGWCCY | 1 cut(s) | 6 |
| PshBI | ATTAAT | 1 cut(s) | 447 |
| Psp1406I | AACGTT | 1 cut(s) | 1362 |
| Psp5II | RGGWCCY | 1 cut(s) | 6 |
| Psp6I | CCWGG | 6 cut(s) | 170, 722, 987, 1102, 1165, 1549 |
| PspFI | CCCAGC | 1 cut(s) | 923 |
| PspGI | CCWGG | 6 cut(s) | 170, 722, 987, 1102, 1165, 1549 |
| PspN4I | GGNNCC | 5 cut(s) | 7, 282, 654, 1042, 1267 |
| PspPI | GGNCC | 7 cut(s) | 6, 520, 672, 754, 1041, 1100, 1123 |
| PspPPI | RGGWCCY | 1 cut(s) | 6 |
| PsuI | RGATCY | 1 cut(s) | 1426 |
| PsyI | GACNNNGTC | 2 cut(s) | 670, 692 |
| RsaI | GTAC | 4 cut(s) | 338, 571, 856, 1423 |
| RsaNI | GTAC | 4 cut(s) | 337, 570, 855, 1422 |
| RseI | CAYNNNNRTG | 2 cut(s) | 149, 1259 |
| SaqAI | TTAA | 2 cut(s) | 447, 1448 |
| SatI | GCNGC | 3 cut(s) | 37, 166, 1287 |
| Sau3AI | GATC | 2 cut(s) | 303, 1426 |
| Sau96I | GGNCC | 7 cut(s) | 6, 520, 672, 754, 1041, 1100, 1123 |
| SchI | GAGTC | 3 cut(s) | 1088, 1211, 1460 |
| ScrFI | CCNGG | 6 cut(s) | 172, 724, 989, 1104, 1167, 1551 |
| SduI | GDGCHC | 3 cut(s) | 285, 657, 952 |
| SexAI | ACCWGGT | 1 cut(s) | 1165 |
| SfaNI | GCATC | 3 cut(s) | 196, 420, 1228 |
| SfuI | TTCGAA | 1 cut(s) | 1004 |
| SinI | GGWCC | 5 cut(s) | 6, 520, 672, 754, 1041 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 149, 1259 |
| SmlI | CTYRAG | 3 cut(s) | 385, 434, 595 |
| SmoI | CTYRAG | 3 cut(s) | 385, 434, 595 |
| SsiI | CCGC | 5 cut(s) | 96, 160, 343, 510, 1143 |
| SspMI | CTAG | 1 cut(s) | 1500 |
| StyD4I | CCNGG | 6 cut(s) | 170, 722, 987, 1102, 1165, 1549 |
| StyI | CCWWGG | 1 cut(s) | 328 |
| TaaI | ACNGT | 3 cut(s) | 1225, 1258, 1459 |
| TaiI | ACGT | 3 cut(s) | 342, 860, 1365 |
| TaqI | TCGA | 4 cut(s) | 123, 665, 696, 1004 |
| TfiI | GAWTC | 6 cut(s) | 154, 439, 565, 761, 773, 1382 |
| Tru1I | TTAA | 2 cut(s) | 447, 1448 |
| Tru9I | TTAA | 2 cut(s) | 447, 1448 |
| TseFI | GTSAC | 1 cut(s) | 820 |
| TseI | GCWGC | 3 cut(s) | 36, 165, 1286 |
| Tsp45I | GTSAC | 1 cut(s) | 820 |
| TspDTI | ATGAA | 8 cut(s) | 36, 624, 674, 1190, 1218, 1268, 1296, 1487 |
| TspGWI | ACGGA | 1 cut(s) | 311 |
| Tth111I | GACNNNGTC | 2 cut(s) | 670, 692 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1059, 1109 |
| VpaK11BI | GGWCC | 5 cut(s) | 6, 520, 672, 754, 1041 |
| VspI | ATTAAT | 1 cut(s) | 447 |
| XapI | RAATTY | 4 cut(s) | 182, 253, 366, 493 |
| XspI | CTAG | 1 cut(s) | 1500 |
| Zsp2I | ATGCAT | 1 cut(s) | 800 |