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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 235 |
| AciI | CCGC | 6 cut(s) | 105, 131, 201, 211, 397, 468 |
| AclWI | GGATC | 2 cut(s) | 329, 766 |
| AcsI | RAATTY | 1 cut(s) | 316 |
| AfaI | GTAC | 1 cut(s) | 219 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 11, 104 |
| AflIII | ACRYGT | 1 cut(s) | 549 |
| AgsI | TTSAA | 1 cut(s) | 316 |
| AjiI | CACGTC | 2 cut(s) | 526, 670 |
| AjnI | CCWGG | 1 cut(s) | 26 |
| AluBI | AGCT | 2 cut(s) | 68, 352 |
| AluI | AGCT | 2 cut(s) | 68, 352 |
| Alw26I | GTCTC | 1 cut(s) | 684 |
| AlwI | GGATC | 2 cut(s) | 329, 766 |
| Aor13HI | TCCGGA | 1 cut(s) | 235 |
| AoxI | GGCC | 2 cut(s) | 94, 443 |
| ApeKI | GCWGC | 1 cut(s) | 349 |
| ApoI | RAATTY | 1 cut(s) | 316 |
| AseI | ATTAAT | 1 cut(s) | 254 |
| AspS9I | GGNCC | 4 cut(s) | 24, 95, 443, 471 |
| AsuHPI | GGTGA | 2 cut(s) | 533, 653 |
| AsuII | TTCGAA | 1 cut(s) | 297 |
| AvaII | GGWCC | 2 cut(s) | 24, 471 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 133, 165 |
| BbvI | GCAGC | 1 cut(s) | 361 |
| BccI | CCATC | 1 cut(s) | 76 |
| BciT130I | CCWGG | 1 cut(s) | 28 |
| BcoDI | GTCTC | 1 cut(s) | 684 |
| BfmI | CTRYAG | 2 cut(s) | 150, 695 |
| BisI | GCNGC | 2 cut(s) | 132, 350 |
| BlsI | GCNGC | 2 cut(s) | 133, 351 |
| Bme1390I | CCNGG | 1 cut(s) | 28 |
| Bme18I | GGWCC | 2 cut(s) | 24, 471 |
| BmgBI | CACGTC | 2 cut(s) | 526, 670 |
| BmgT120I | GGNCC | 4 cut(s) | 24, 95, 443, 471 |
| BmiI | GGNNCC | 2 cut(s) | 177, 472 |
| BmrFI | CCNGG | 1 cut(s) | 28 |
| BmsI | GCATC | 1 cut(s) | 370 |
| Bpu14I | TTCGAA | 1 cut(s) | 297 |
| BsaI | GGTCTC | 1 cut(s) | 684 |
| BsaJI | CCNNGG | 1 cut(s) | 27 |
| BsaWI | WCCGGW | 2 cut(s) | 178, 235 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 230, 260, 463, 493 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 11, 104 |
| Bse3DI | GCAATG | 2 cut(s) | 390, 422 |
| BseAI | TCCGGA | 1 cut(s) | 235 |
| BseBI | CCWGG | 1 cut(s) | 28 |
| BseDI | CCNNGG | 1 cut(s) | 27 |
| BseGI | GGATG | 2 cut(s) | 721, 789 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 11, 104 |
| BseMI | GCAATG | 2 cut(s) | 390, 422 |
| BseMII | CTCAG | 1 cut(s) | 776 |
| BseXI | GCAGC | 1 cut(s) | 361 |
| BshFI | GGCC | 2 cut(s) | 96, 445 |
| BsiSI | CCGG | 2 cut(s) | 179, 236 |
| BslFI | GGGAC | 3 cut(s) | 227, 484, 680 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 11, 104 |
| BsmAI | GTCTC | 1 cut(s) | 684 |
| BsmFI | GGGAC | 3 cut(s) | 227, 484, 680 |
| BsmI | GAATGC | 2 cut(s) | 262, 293 |
| BsnI | GGCC | 2 cut(s) | 96, 445 |
| Bso31I | GGTCTC | 1 cut(s) | 684 |
| Bsp119I | TTCGAA | 1 cut(s) | 297 |
| Bsp13I | TCCGGA | 1 cut(s) | 235 |
| Bsp143I | GATC | 2 cut(s) | 334, 758 |
| BspACI | CCGC | 6 cut(s) | 105, 131, 201, 211, 397, 468 |
| BspANI | GGCC | 2 cut(s) | 96, 445 |
| BspCNI | CTCAG | 1 cut(s) | 775 |
| BspEI | TCCGGA | 1 cut(s) | 235 |
| BspLI | GGNNCC | 2 cut(s) | 177, 472 |
| BspPI | GGATC | 2 cut(s) | 329, 766 |
| BspT104I | TTCGAA | 1 cut(s) | 297 |
| BspTNI | GGTCTC | 1 cut(s) | 684 |
| BsrDI | GCAATG | 2 cut(s) | 390, 422 |
| BssECI | CCNNGG | 1 cut(s) | 27 |
| BssMI | GATC | 2 cut(s) | 334, 758 |
| Bst2UI | CCWGG | 1 cut(s) | 28 |
| Bst4CI | ACNGT | 2 cut(s) | 154, 454 |
| BstBI | TTCGAA | 1 cut(s) | 297 |
| BstC8I | GCNNGC | 1 cut(s) | 347 |
| BstDEI | CTNAG | 2 cut(s) | 735, 762 |
| BstF5I | GGATG | 2 cut(s) | 721, 789 |
| BstKTI | GATC | 2 cut(s) | 337, 761 |
| BstMAI | GTCTC | 1 cut(s) | 684 |
| BstMBI | GATC | 2 cut(s) | 334, 758 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 102 |
| BstNI | CCWGG | 1 cut(s) | 28 |
| BstNSI | RCATGY | 1 cut(s) | 625 |
| BstSCI | CCNGG | 1 cut(s) | 26 |
| BstSFI | CTRYAG | 2 cut(s) | 150, 695 |
| BstV1I | GCAGC | 1 cut(s) | 361 |
| BstX2I | RGATCY | 2 cut(s) | 334, 758 |
| BstYI | RGATCY | 2 cut(s) | 334, 758 |
| BsuRI | GGCC | 2 cut(s) | 96, 445 |
| BtrI | CACGTC | 2 cut(s) | 526, 670 |
| BtsCI | GGATG | 2 cut(s) | 721, 789 |
| BtsIMutI | CAGTG | 1 cut(s) | 459 |
| Cac8I | GCNNGC | 1 cut(s) | 347 |
| Cfr13I | GGNCC | 4 cut(s) | 24, 95, 443, 471 |
| CseI | GACGC | 1 cut(s) | 234 |
| Csp6I | GTAC | 1 cut(s) | 218 |
| CviAII | CATG | 9 cut(s) | 502, 530, 575, 602, 622, 662, 674, 686, 722 |
| CviJI | RGCY | 6 cut(s) | 16, 68, 96, 352, 445, 654 |
| CviKI_1 | RGCY | 6 cut(s) | 16, 68, 96, 352, 445, 654 |
| CviQI | GTAC | 1 cut(s) | 218 |
| DdeI | CTNAG | 2 cut(s) | 735, 762 |
| DpnI | GATC | 2 cut(s) | 336, 760 |
| DpnII | GATC | 2 cut(s) | 334, 758 |
| DraI | TTTAAA | 1 cut(s) | 648 |
| Eco31I | GGTCTC | 1 cut(s) | 684 |
| Eco47I | GGWCC | 2 cut(s) | 24, 471 |
| EcoRI | GAATTC | 1 cut(s) | 316 |
| EcoRII | CCWGG | 1 cut(s) | 26 |
| FaeI | CATG | 9 cut(s) | 505, 533, 578, 605, 625, 665, 677, 689, 725 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 728, 760 |
| FaqI | GGGAC | 3 cut(s) | 227, 484, 680 |
| FatI | CATG | 9 cut(s) | 501, 529, 574, 601, 621, 661, 673, 685, 721 |
| FauI | CCCGC | 3 cut(s) | 204, 390, 461 |
| Fnu4HI | GCNGC | 2 cut(s) | 132, 350 |
| FokI | GGATG | 2 cut(s) | 728, 796 |
| Fsp4HI | GCNGC | 2 cut(s) | 132, 350 |
| GluI | GCNGC | 2 cut(s) | 132, 350 |
| HaeIII | GGCC | 2 cut(s) | 96, 445 |
| HapII | CCGG | 2 cut(s) | 179, 236 |
| HgaI | GACGC | 1 cut(s) | 234 |
| Hin1II | CATG | 9 cut(s) | 505, 533, 578, 605, 625, 665, 677, 689, 725 |
| HincII | GTYRAC | 1 cut(s) | 417 |
| HindII | GTYRAC | 1 cut(s) | 417 |
| HpaII | CCGG | 2 cut(s) | 179, 236 |
| HphI | GGTGA | 2 cut(s) | 533, 653 |
| Hpy166II | GTNNAC | 2 cut(s) | 417, 619 |
| Hpy188I | TCNGA | 3 cut(s) | 168, 499, 765 |
| Hpy188III | TCNNGA | 2 cut(s) | 236, 707 |
| Hpy8I | GTNNAC | 2 cut(s) | 417, 619 |
| Hpy99I | CGWCG | 1 cut(s) | 250 |
| HpyAV | CCTTC | 9 cut(s) | 56, 86, 116, 120, 135, 184, 293, 607, 628 |
| HpyCH4III | ACNGT | 2 cut(s) | 154, 454 |
| HpyCH4IV | ACGT | 4 cut(s) | 216, 525, 549, 669 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 102 |
| HpyF3I | CTNAG | 2 cut(s) | 735, 762 |
| HpySE526I | ACGT | 4 cut(s) | 216, 525, 549, 669 |
| Hsp92II | CATG | 9 cut(s) | 505, 533, 578, 605, 625, 665, 677, 689, 725 |
| Kpn2I | TCCGGA | 1 cut(s) | 235 |
| Kzo9I | GATC | 2 cut(s) | 334, 758 |
| LmnI | GCTCC | 1 cut(s) | 65 |
| Lsp1109I | GCAGC | 1 cut(s) | 361 |
| LweI | GCATC | 1 cut(s) | 370 |
| MaeII | ACGT | 4 cut(s) | 216, 525, 549, 669 |
| MaeIII | GTNAC | 2 cut(s) | 287, 521 |
| MalI | GATC | 2 cut(s) | 336, 760 |
| MboI | GATC | 2 cut(s) | 334, 758 |
| MboII | GAAGA | 4 cut(s) | 415, 591, 622, 778 |
| MflI | RGATCY | 2 cut(s) | 334, 758 |
| MluCI | AATT | 6 cut(s) | 255, 310, 316, 365, 463, 489 |
| MmeI | TCCRAC | 1 cut(s) | 146 |
| MnlI | CCTC | 5 cut(s) | 25, 43, 79, 264, 499 |
| MroI | TCCGGA | 1 cut(s) | 235 |
| MseI | TTAA | 5 cut(s) | 254, 368, 492, 647, 799 |
| MspA1I | CMGCKG | 2 cut(s) | 105, 352 |
| MspI | CCGG | 2 cut(s) | 179, 236 |
| MspR9I | CCNGG | 1 cut(s) | 28 |
| Mva1269I | GAATGC | 2 cut(s) | 262, 293 |
| MvaI | CCWGG | 1 cut(s) | 28 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 102 |
| NdeII | GATC | 2 cut(s) | 334, 758 |
| NlaIII | CATG | 9 cut(s) | 505, 533, 578, 605, 625, 665, 677, 689, 725 |
| NlaIV | GGNNCC | 2 cut(s) | 177, 472 |
| NmeAIII | GCCGAG | 1 cut(s) | 340 |
| NmuCI | GTSAC | 1 cut(s) | 521 |
| NspI | RCATGY | 1 cut(s) | 625 |
| NspV | TTCGAA | 1 cut(s) | 297 |
| PctI | GAATGC | 2 cut(s) | 262, 293 |
| PkrI | GCNGC | 2 cut(s) | 133, 351 |
| PshBI | ATTAAT | 1 cut(s) | 254 |
| Psp6I | CCWGG | 1 cut(s) | 26 |
| PspGI | CCWGG | 1 cut(s) | 26 |
| PspN4I | GGNNCC | 2 cut(s) | 177, 472 |
| PspPI | GGNCC | 4 cut(s) | 24, 95, 443, 471 |
| PsuI | RGATCY | 2 cut(s) | 334, 758 |
| PvuII | CAGCTG | 1 cut(s) | 352 |
| RsaI | GTAC | 1 cut(s) | 219 |
| RsaNI | GTAC | 1 cut(s) | 218 |
| SaqAI | TTAA | 5 cut(s) | 254, 368, 492, 647, 799 |
| SatI | GCNGC | 2 cut(s) | 132, 350 |
| Sau3AI | GATC | 2 cut(s) | 334, 758 |
| Sau96I | GGNCC | 4 cut(s) | 24, 95, 443, 471 |
| ScrFI | CCNGG | 1 cut(s) | 28 |
| SfaNI | GCATC | 1 cut(s) | 370 |
| SfcI | CTRYAG | 2 cut(s) | 150, 695 |
| SfuI | TTCGAA | 1 cut(s) | 297 |
| SinI | GGWCC | 2 cut(s) | 24, 471 |
| SmiI | ATTTAAAT | 1 cut(s) | 648 |
| Sse9I | AATT | 6 cut(s) | 255, 310, 316, 365, 463, 489 |
| SsiI | CCGC | 6 cut(s) | 105, 131, 201, 211, 397, 468 |
| StyD4I | CCNGG | 1 cut(s) | 26 |
| SwaI | ATTTAAAT | 1 cut(s) | 648 |
| TaaI | ACNGT | 2 cut(s) | 154, 454 |
| TaiI | ACGT | 4 cut(s) | 219, 528, 552, 672 |
| TaqI | TCGA | 1 cut(s) | 297 |
| TasI | AATT | 6 cut(s) | 255, 310, 316, 365, 463, 489 |
| TauI | GCSGC | 1 cut(s) | 134 |
| Tru1I | TTAA | 5 cut(s) | 254, 368, 492, 647, 799 |
| Tru9I | TTAA | 5 cut(s) | 254, 368, 492, 647, 799 |
| TscAI | CASTG | 1 cut(s) | 459 |
| TseFI | GTSAC | 1 cut(s) | 521 |
| TseI | GCWGC | 1 cut(s) | 349 |
| Tsp45I | GTSAC | 1 cut(s) | 521 |
| TspDTI | ATGAA | 2 cut(s) | 57, 618 |
| TspRI | CASTG | 1 cut(s) | 459 |
| VpaK11BI | GGWCC | 2 cut(s) | 24, 471 |
| VspI | ATTAAT | 1 cut(s) | 254 |
| XapI | RAATTY | 1 cut(s) | 316 |
| XceI | RCATGY | 1 cut(s) | 625 |