ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 276 |
| Acc65I | GGTACC | 1 cut(s) | 283 |
| AccB1I | GGYRCC | 1 cut(s) | 283 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 755 |
| AciI | CCGC | 2 cut(s) | 320, 361 |
| AclWI | GGATC | 4 cut(s) | 175, 188, 212, 475 |
| AcoI | YGGCCR | 1 cut(s) | 534 |
| AcsI | RAATTY | 1 cut(s) | 457 |
| AcyI | GRCGYC | 2 cut(s) | 273, 381 |
| AfaI | GTAC | 1 cut(s) | 285 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 233, 357, 490, 491, 755 |
| AgeI | ACCGGT | 1 cut(s) | 397 |
| AgsI | TTSAA | 3 cut(s) | 142, 580, 736 |
| AluBI | AGCT | 5 cut(s) | 34, 223, 248, 373, 637 |
| AluI | AGCT | 5 cut(s) | 34, 223, 248, 373, 637 |
| Alw26I | GTCTC | 4 cut(s) | 156, 235, 280, 764 |
| AlwI | GGATC | 4 cut(s) | 175, 188, 212, 475 |
| Ama87I | CYCGRG | 1 cut(s) | 232 |
| AoxI | GGCC | 3 cut(s) | 534, 704, 746 |
| ApoI | RAATTY | 1 cut(s) | 457 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 449, 481 |
| AsiGI | ACCGGT | 1 cut(s) | 397 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 137 |
| Asp718I | GGTACC | 1 cut(s) | 283 |
| AspS9I | GGNCC | 5 cut(s) | 214, 241, 348, 704, 746 |
| AsuC2I | CCSGG | 1 cut(s) | 218 |
| AsuHPI | GGTGA | 2 cut(s) | 94, 597 |
| AvaI | CYCGRG | 1 cut(s) | 232 |
| AvaII | GGWCC | 3 cut(s) | 214, 241, 348 |
| BaeGI | GKGCMC | 1 cut(s) | 663 |
| BamHI | GGATCC | 1 cut(s) | 180 |
| BanI | GGYRCC | 1 cut(s) | 283 |
| BccI | CCATC | 5 cut(s) | 43, 290, 308, 328, 508 |
| BcnI | CCSGG | 1 cut(s) | 218 |
| BcoDI | GTCTC | 4 cut(s) | 156, 235, 280, 764 |
| BfaI | CTAG | 4 cut(s) | 249, 288, 638, 708 |
| Bme1390I | CCNGG | 1 cut(s) | 218 |
| Bme18I | GGWCC | 3 cut(s) | 214, 241, 348 |
| BmeT110I | CYCGRG | 1 cut(s) | 232 |
| BmgT120I | GGNCC | 5 cut(s) | 214, 241, 348, 704, 746 |
| BmiI | GGNNCC | 4 cut(s) | 182, 216, 285, 717 |
| BmrFI | CCNGG | 1 cut(s) | 218 |
| BmrI | ACTGGG | 1 cut(s) | 753 |
| BmsI | GCATC | 2 cut(s) | 394, 487 |
| BmuI | ACTGGG | 1 cut(s) | 753 |
| BpmI | CTGGAG | 1 cut(s) | 587 |
| BpuMI | CCSGG | 1 cut(s) | 218 |
| BsaHI | GRCGYC | 2 cut(s) | 273, 381 |
| BsaI | GGTCTC | 1 cut(s) | 764 |
| BsaJI | CCNNGG | 1 cut(s) | 749 |
| BsaWI | WCCGGW | 1 cut(s) | 397 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 233, 357, 490, 491, 755 |
| Bse118I | RCCGGY | 1 cut(s) | 397 |
| Bse1I | ACTGG | 2 cut(s) | 440, 748 |
| Bse3DI | GCAATG | 1 cut(s) | 104 |
| BseDI | CCNNGG | 1 cut(s) | 749 |
| BseGI | GGATG | 3 cut(s) | 319, 409, 439 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 233, 357, 490, 491, 755 |
| BseMI | GCAATG | 1 cut(s) | 104 |
| BseMII | CTCAG | 1 cut(s) | 681 |
| BseNI | ACTGG | 2 cut(s) | 440, 748 |
| BseSI | GKGCMC | 1 cut(s) | 663 |
| BseX3I | CGGCCG | 1 cut(s) | 534 |
| Bsh1285I | CGRYCG | 1 cut(s) | 537 |
| BshFI | GGCC | 3 cut(s) | 536, 706, 748 |
| BshNI | GGYRCC | 1 cut(s) | 283 |
| BshTI | ACCGGT | 1 cut(s) | 397 |
| BsiEI | CGRYCG | 1 cut(s) | 537 |
| BsiHKCI | CYCGRG | 1 cut(s) | 232 |
| BsiSI | CCGG | 3 cut(s) | 71, 218, 398 |
| BslFI | GGGAC | 3 cut(s) | 31, 186, 200 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 233, 357, 490, 491, 755 |
| BsmAI | GTCTC | 4 cut(s) | 156, 235, 280, 764 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 3 cut(s) | 31, 186, 200 |
| BsmI | GAATGC | 1 cut(s) | 547 |
| BsnI | GGCC | 3 cut(s) | 536, 706, 748 |
| Bso31I | GGTCTC | 1 cut(s) | 764 |
| BsoBI | CYCGRG | 1 cut(s) | 232 |
| Bsp1286I | GDGCHC | 1 cut(s) | 663 |
| Bsp143I | GATC | 3 cut(s) | 180, 204, 480 |
| BspACI | CCGC | 2 cut(s) | 320, 361 |
| BspANI | GGCC | 3 cut(s) | 536, 706, 748 |
| BspCNI | CTCAG | 1 cut(s) | 682 |
| BspHI | TCATGA | 1 cut(s) | 207 |
| BspLI | GGNNCC | 4 cut(s) | 182, 216, 285, 717 |
| BspPI | GGATC | 4 cut(s) | 175, 188, 212, 475 |
| BspT107I | GGYRCC | 1 cut(s) | 283 |
| BspTNI | GGTCTC | 1 cut(s) | 764 |
| BsrDI | GCAATG | 1 cut(s) | 104 |
| BsrFI | RCCGGY | 1 cut(s) | 397 |
| BsrI | ACTGG | 2 cut(s) | 440, 748 |
| BssAI | RCCGGY | 1 cut(s) | 397 |
| BssECI | CCNNGG | 1 cut(s) | 749 |
| BssMI | GATC | 3 cut(s) | 180, 204, 480 |
| BssNI | GRCGYC | 2 cut(s) | 273, 381 |
| Bst4CI | ACNGT | 2 cut(s) | 214, 390 |
| BstACI | GRCGYC | 2 cut(s) | 273, 381 |
| BstC8I | GCNNGC | 1 cut(s) | 36 |
| BstDEI | CTNAG | 2 cut(s) | 690, 780 |
| BstDSI | CCRYGG | 1 cut(s) | 749 |
| BstF5I | GGATG | 3 cut(s) | 319, 409, 439 |
| BstKTI | GATC | 3 cut(s) | 183, 207, 483 |
| BstMAI | GTCTC | 4 cut(s) | 156, 235, 280, 764 |
| BstMBI | GATC | 3 cut(s) | 180, 204, 480 |
| BstMCI | CGRYCG | 1 cut(s) | 537 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 476 |
| BstSCI | CCNGG | 1 cut(s) | 216 |
| BstSLI | GKGCMC | 1 cut(s) | 663 |
| BstX2I | RGATCY | 1 cut(s) | 180 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 460 |
| BstYI | RGATCY | 1 cut(s) | 180 |
| BstZI | CGGCCG | 1 cut(s) | 534 |
| BsuRI | GGCC | 3 cut(s) | 536, 706, 748 |
| BtgI | CCRYGG | 1 cut(s) | 749 |
| BtgZI | GCGATG | 1 cut(s) | 315 |
| BtsCI | GGATG | 3 cut(s) | 319, 409, 439 |
| Cac8I | GCNNGC | 1 cut(s) | 36 |
| CciI | TCATGA | 1 cut(s) | 207 |
| Cfr10I | RCCGGY | 1 cut(s) | 397 |
| Cfr13I | GGNCC | 5 cut(s) | 214, 241, 348, 704, 746 |
| CseI | GACGC | 1 cut(s) | 389 |
| Csp6I | GTAC | 1 cut(s) | 284 |
| CspAI | ACCGGT | 1 cut(s) | 397 |
| CviAII | CATG | 1 cut(s) | 208 |
| CviQI | GTAC | 1 cut(s) | 284 |
| DdeI | CTNAG | 2 cut(s) | 690, 780 |
| DpnI | GATC | 3 cut(s) | 182, 206, 482 |
| DpnII | GATC | 3 cut(s) | 180, 204, 480 |
| EaeI | YGGCCR | 1 cut(s) | 534 |
| EagI | CGGCCG | 1 cut(s) | 534 |
| EciI | GGCGGA | 2 cut(s) | 335, 376 |
| EclXI | CGGCCG | 1 cut(s) | 534 |
| Eco31I | GGTCTC | 1 cut(s) | 764 |
| Eco47I | GGWCC | 3 cut(s) | 214, 241, 348 |
| Eco52I | CGGCCG | 1 cut(s) | 534 |
| Eco88I | CYCGRG | 1 cut(s) | 232 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 1 cut(s) | 211 |
| FaiI | YATR | 2 cut(s) | 209, 410 |
| FaqI | GGGAC | 3 cut(s) | 31, 186, 200 |
| FatI | CATG | 1 cut(s) | 207 |
| FokI | GGATG | 3 cut(s) | 326, 416, 446 |
| FspBI | CTAG | 4 cut(s) | 249, 288, 638, 708 |
| GsuI | CTGGAG | 1 cut(s) | 587 |
| HaeIII | GGCC | 3 cut(s) | 536, 706, 748 |
| HapII | CCGG | 3 cut(s) | 71, 218, 398 |
| HgaI | GACGC | 1 cut(s) | 389 |
| Hin1I | GRCGYC | 2 cut(s) | 273, 381 |
| Hin1II | CATG | 1 cut(s) | 211 |
| HincII | GTYRAC | 1 cut(s) | 528 |
| HindII | GTYRAC | 1 cut(s) | 528 |
| HindIII | AAGCTT | 1 cut(s) | 32 |
| HinfI | GANTC | 6 cut(s) | 149, 174, 323, 596, 641, 692 |
| HpaII | CCGG | 3 cut(s) | 71, 218, 398 |
| HphI | GGTGA | 2 cut(s) | 94, 597 |
| Hpy166II | GTNNAC | 3 cut(s) | 379, 528, 605 |
| Hpy188I | TCNGA | 2 cut(s) | 132, 245 |
| Hpy188III | TCNNGA | 3 cut(s) | 178, 208, 331 |
| Hpy8I | GTNNAC | 3 cut(s) | 379, 528, 605 |
| Hpy99I | CGWCG | 1 cut(s) | 332 |
| HpyAV | CCTTC | 2 cut(s) | 163, 411 |
| HpyCH4III | ACNGT | 2 cut(s) | 214, 390 |
| HpyCH4IV | ACGT | 2 cut(s) | 20, 273 |
| HpyCH4V | TGCA | 2 cut(s) | 523, 547 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 476 |
| HpyF3I | CTNAG | 2 cut(s) | 690, 780 |
| HpySE526I | ACGT | 2 cut(s) | 20, 273 |
| Hsp92I | GRCGYC | 2 cut(s) | 273, 381 |
| Hsp92II | CATG | 1 cut(s) | 211 |
| KpnI | GGTACC | 1 cut(s) | 287 |
| Kzo9I | GATC | 3 cut(s) | 180, 204, 480 |
| LmnI | GCTCC | 2 cut(s) | 220, 370 |
| LweI | GCATC | 2 cut(s) | 394, 487 |
| MaeI | CTAG | 4 cut(s) | 249, 288, 638, 708 |
| MaeII | ACGT | 2 cut(s) | 20, 273 |
| MalI | GATC | 3 cut(s) | 182, 206, 482 |
| MboI | GATC | 3 cut(s) | 180, 204, 480 |
| MboII | GAAGA | 3 cut(s) | 305, 523, 748 |
| MflI | RGATCY | 1 cut(s) | 180 |
| MhlI | GDGCHC | 1 cut(s) | 663 |
| MluCI | AATT | 3 cut(s) | 119, 457, 518 |
| MlyI | GAGTC | 3 cut(s) | 158, 168, 701 |
| MnlI | CCTC | 8 cut(s) | 46, 52, 67, 245, 301, 339, 562, 676 |
| MroXI | GAANNNNTTC | 1 cut(s) | 137 |
| MseI | TTAA | 5 cut(s) | 41, 159, 423, 428, 627 |
| MspI | CCGG | 3 cut(s) | 71, 218, 398 |
| MspR9I | CCNGG | 1 cut(s) | 218 |
| Mva1269I | GAATGC | 1 cut(s) | 547 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 476 |
| NciI | CCSGG | 1 cut(s) | 218 |
| NdeII | GATC | 3 cut(s) | 180, 204, 480 |
| NlaIII | CATG | 1 cut(s) | 211 |
| NlaIV | GGNNCC | 4 cut(s) | 182, 216, 285, 717 |
| NmeAIII | GCCGAG | 1 cut(s) | 562 |
| PagI | TCATGA | 1 cut(s) | 207 |
| PctI | GAATGC | 1 cut(s) | 547 |
| PdmI | GAANNNNTTC | 1 cut(s) | 137 |
| PfeI | GAWTC | 3 cut(s) | 323, 596, 641 |
| PflFI | GACNNNGTC | 1 cut(s) | 691 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 755 |
| PfoI | TCCNGGA | 1 cut(s) | 216 |
| PinAI | ACCGGT | 1 cut(s) | 397 |
| PleI | GAGTC | 3 cut(s) | 157, 168, 700 |
| PpsI | GAGTC | 3 cut(s) | 157, 168, 700 |
| PspN4I | GGNNCC | 4 cut(s) | 182, 216, 285, 717 |
| PspPI | GGNCC | 5 cut(s) | 214, 241, 348, 704, 746 |
| PsuI | RGATCY | 1 cut(s) | 180 |
| PsyI | GACNNNGTC | 1 cut(s) | 691 |
| RsaI | GTAC | 1 cut(s) | 285 |
| RsaNI | GTAC | 1 cut(s) | 284 |
| SaqAI | TTAA | 5 cut(s) | 41, 159, 423, 428, 627 |
| Sau3AI | GATC | 3 cut(s) | 180, 204, 480 |
| Sau96I | GGNCC | 5 cut(s) | 214, 241, 348, 704, 746 |
| SchI | GAGTC | 3 cut(s) | 158, 168, 701 |
| ScrFI | CCNGG | 1 cut(s) | 218 |
| SduI | GDGCHC | 1 cut(s) | 663 |
| SfaNI | GCATC | 2 cut(s) | 394, 487 |
| SgrAI | CRCCGGYG | 1 cut(s) | 397 |
| SinI | GGWCC | 3 cut(s) | 214, 241, 348 |
| Sse9I | AATT | 3 cut(s) | 119, 457, 518 |
| SsiI | CCGC | 2 cut(s) | 320, 361 |
| SspMI | CTAG | 4 cut(s) | 249, 288, 638, 708 |
| StyD4I | CCNGG | 1 cut(s) | 216 |
| TaaI | ACNGT | 2 cut(s) | 214, 390 |
| TaiI | ACGT | 2 cut(s) | 23, 276 |
| TaqI | TCGA | 2 cut(s) | 28, 330 |
| TasI | AATT | 3 cut(s) | 119, 457, 518 |
| TfiI | GAWTC | 3 cut(s) | 323, 596, 641 |
| Tru1I | TTAA | 5 cut(s) | 41, 159, 423, 428, 627 |
| Tru9I | TTAA | 5 cut(s) | 41, 159, 423, 428, 627 |
| TspDTI | ATGAA | 2 cut(s) | 97, 182 |
| TspGWI | ACGGA | 3 cut(s) | 316, 358, 766 |
| Tth111I | GACNNNGTC | 1 cut(s) | 691 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 755 |
| VpaK11BI | GGWCC | 3 cut(s) | 214, 241, 348 |
| XapI | RAATTY | 1 cut(s) | 457 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 193 |
| XmnI | GAANNNNTTC | 1 cut(s) | 137 |
| XspI | CTAG | 4 cut(s) | 249, 288, 638, 708 |
| ZraI | GACGTC | 1 cut(s) | 274 |