FvH4_3g22921

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000022
Physical Location & Seq
Reverse (-)
16057311 .. 16060621
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22921.t1

Sequence Viewer

Length: 2874 bp
ATGCGGTGGTTGCTGAGTGTGGGGGAGTGGTTTTGCTTTCTGGTAACCTGGTACTTAGTGAAGATGGACGACATCATCTTAGGAATTTCCAAGAATCTTGCAATTGTGGATGAGGAAGAATTGAACATCGTCCAAGTCGAAGATCCGAAGGAGATTGCCTCAGGGAGATATTGGCTTGTCAGCAAACTTTTAACCAATAAGTCTTATTGCTTTGAGGCCCTCCGAAATACTCTGAAACGTATCTGGTTGGTGAAGGGAGAGGTGATAGTTTTCAAGTGGGAAGACTCGGATCGGATCTTGTTCTCTTTCGAATCTGATGAGGATAGAGGGAGGGTGTTGAGAGGAAGCCCTTGGACTTTTGACAACGCTCTAGTATTACTCGCTGCTTTTGATGGAGCAAGTAATCCCAATTCAGTTCCATTGGAGACTCAAGCGTTTTGGATTAGGGTTCGAGGTATTGAGCCTGAGTTTATAACACCAAAGCTTGCAGAGAGAATTGGTAGACAACTGGGCATCTTCTATCCCATTGGAGGTGGTTTTAGTGAAGATGGCAGTGGAAGATTCCTCCGAATAAGAGTAGGTTTGTCTGTCACAAAGCCACTTCAACGATGGTTGAAGCTCTCAATTGCTGGACGTTCTTTAACAGAGAAACTACAGCTGGAATATGAACATTTGCCTTATCTATGCTTTTTTTGTGGGAGATTAGACCATGTTAGCTCTGGCTGTGTACTCCATAAGGAGGGTGTGATCCCAGATGAGCGGTTTGGTAGATGGAAAACGCTGGCTAAGAATGTTTTTTCCATAGACCCAGTTTGTCAGGAACAGGGAAGGCGTTTTGGTTTACTTCCCAAACCAAAAGGATGGTCAATCAGCGTGTCGGAAAATGAGTTGTTTGATAGGGTCCGAACGCGAGAAGATTTTGAGAACGCTCATAGAGGTCCGGGAACGGAGATGGAAGTGGATAAACCGGCAGAGGATGCTCAGGTGGAGCCATTGGCCAAGCGCCGCCGTGCGGGACAGACAATGGTGATGGAGGTTGATCCGGGAAAATCTCAACTGAGCGATTCTCGGGATCTAATTGAGATTGATGTGCGAAAGTTGAGGGATAGATTTTCTGGAGTTAAGGGATTTGCTGTCGGTCAATCTCAACTGGGCGGGGTTCAAAAGAAGTCAAAAGAGAGTAATTCAAATTTAATAATAAATGAGGAGGGGAATGGGTTGACCGATGGAAGGACTTTTGTTGGCCCAATTAATCCTGGGGCCCAAGTCTCCAAGGTGTATCCTCAAATAGAAAAGGGCACAACCCTCTCTCATGCCCGAGACCAGTTTCTAAAGCGTGTTATAGGAGACGCAGCATTGGCACAGGCAGAGACGTCAATCCCTAACTCTAATTTGGGAAATCCAGATTCAAACTCTCCTGCTAATGTTGTAGGCAAGAATTCTGAGAAAGGTTTGTCTAGAGAAATGGGGTCTGCCAGCGATGTCAGGAAGAAAGAAAGAGGGAGTGGGAAGGGAGGAGGGGCGCAAACAGGATGCAGAGGCCATGGTCAGGTGTCCTCGATGCTGGATAAGGGGAAGGCAATTTCGACTGCAGAAGAGAAGGAGATGGCGAAAGGGACTGAGGTAGGGAAGGGAGATAAAGCTAGGAGAGGCCGCAAGGGCTTTGTTGTGGGTGGAAGGAGCCGCAGCAAGGCTACAAAATCATCCTCCTCTGCTAAATCGGTCTCGACAAAGAAGTCGAAGGCAGAAATGACCAATATTTGCTATGATTTAGGATTTGGTGGTTGTTGTGTAGTGGGTAAGGTAGGTAGAAGTAGTGGAGGTTTGGCTATGTTTTGGAGGAAGGGTTTAGCGGTGCGACCTCTGGGATCTTTAATGGGACATATAGATGTGGAAGTACAACTTGACTCAGGACTAGTTCGTATTTCAGGGTTCTATGGTAATCCAGAGACTAGTAACAGATGGGCTTCATGGGAATTGCTACGCAGGATTGCAGCTTCGGATGTGGAGGTCTCAGGTCCTTTGTTTACATGGAGAAGGGGAGATTTATTGGAATGTCTTGACAGGAGTTTGATTAACCAAGAAGCTGCTGAGATGTTTCCTCGCATTCATGAGCTGCATATTGATGTAGGAGCGTCAGACCACATACCCATTCTCATTTATTCTGATGGCTTGCCGGCTAAGAAATGCGACAAGAGGCAGGAGCATAGGAGGGACACTATTGGTAATATTCCGAGGCAAATTAACAGGATGAATAGTGAATTGCAATCTCTGCCTTTTGATAGTACAAATAGTGAGGTGGTGGAGAGAAGAATTTCAGTAGTTGCTGAGCTACAAAAATTAATGGAGTATGAAGAACAGATGTGGAGGCAGAAATCTCGGATTGATTGGCTCAGTGAAAGGGATCAAAATACTAAGTTCTTCCACGGTTATGCAAAAGCGAGAGGTCGAAGGAATAGAGTTGGAAGAATTATGAATGCTGCCGGGGAATGGCAAGAGACATCTAAGGGTATTAAAGAGGCTTTTATTAGTTATTTCCAGAATATTTTTGCTTCAGAAGGGTGTAACCATATGGAGTTGGTTCTGGATGCTATTCCTCAGAAGATATCAGATGCTATGAACAATCGTTTATGTCAACCGTATGAAAGAGGTGAGATTGAGCAGGCTTTAAAGCAGATGGCTCTAGATAAAGCTCCAGGAGAGGATGGGTTCTCTGCGAGATTTTTCCAAGAGTACTGGTCGGTGGTGGGAGATGATGTCAGTGACTTGTGCTTGAGAGTGTTGAATGAAGGAGCTGAGTTGACTGGTATTAATCATACTTTAATCGCTTTAATCCCAAAGGTTGAAAATCAGCAACAAGTCCCTTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

958

Amino Acids

107.06

Weight (kDa)

8.72

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 57 - 135 7.7e-09 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 196 - 242 2.6e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
AasI GACNNNNNNGTC 1 cut(s) 1735
AatII GACGTC 1 cut(s) 1376
AccBSI CCGCTC 1 cut(s) 760
AccI GTMKAC 1 cut(s) 502
AccII CGCG 1 cut(s) 910
AciI CCGC 8 cut(s) 4, 760, 1006, 1013, 1155, 1654, 1684, 1853
AclWI GGATC 8 cut(s) 137, 297, 302, 742, 1034, 1080, 1876, 2412
AcoI YGGCCR 1 cut(s) 996
AcsI RAATTY 4 cut(s) 84, 1189, 1438, 2313
AcuI CTGAAG 1 cut(s) 2538
AcyI GRCGYC 1 cut(s) 1373
AfaI GTAC 5 cut(s) 53, 729, 1899, 2287, 2735
AfiI CCNNNNNNNGG 7 cut(s) 530, 739, 1012, 1230, 1549, 1690, 2490
AgsI TTSAA 9 cut(s) 124, 274, 605, 616, 1163, 1188, 1410, 2785, 2846
AhlI ACTAGT 2 cut(s) 1915, 1952
AjnI CCWGG 3 cut(s) 47, 1255, 2695
Alw26I GTCTC 9 cut(s) 419, 1273, 1314, 1341, 1364, 1729, 1943, 2017, 2492
AlwI GGATC 8 cut(s) 137, 297, 302, 742, 1034, 1080, 1876, 2412
Ama87I CYCGRG 2 cut(s) 1068, 1317
AoxI GGCC 6 cut(s) 216, 996, 1243, 1260, 1540, 1651
ApaI GGGCCC 1 cut(s) 1264
ApeKI GCWGC 7 cut(s) 383, 1352, 1686, 1994, 2087, 2116, 2480
ApoI RAATTY 4 cut(s) 84, 1189, 1438, 2313
ArsI GACNNNNNNTTYG 2 cut(s) 848, 880
AseI ATTAAT 3 cut(s) 1251, 2342, 2811
Asp700I GAANNNNTTC 1 cut(s) 2314
AspLEI GCGC 2 cut(s) 1005, 1525
AspS9I GGNCC 7 cut(s) 217, 901, 938, 1244, 1260, 1261, 2018
AsuC2I CCSGG 3 cut(s) 942, 1044, 2485
AsuHPI GGTGA 4 cut(s) 262, 274, 1039, 2663
AsuII TTCGAA 1 cut(s) 309
AvaI CYCGRG 2 cut(s) 1068, 1317
AvaII GGWCC 3 cut(s) 901, 938, 2018
AxyI CCTNAGG 1 cut(s) 160
BaeGI GKGCMC 2 cut(s) 1264, 1301
BalI TGGCCA 1 cut(s) 998
BanII GRGCYC 1 cut(s) 1264
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 7 cut(s) 370, 1364, 1698, 2006, 2074, 2103, 2467
BceAI ACGGC 1 cut(s) 993
BcgI CGANNNNNNTGC 2 cut(s) 2360, 2394
BciT130I CCWGG 3 cut(s) 49, 1257, 2697
BciVI GTATCC 1 cut(s) 1290
BcnI CCSGG 3 cut(s) 942, 1044, 2485
BcoDI GTCTC 9 cut(s) 419, 1273, 1314, 1341, 1364, 1729, 1943, 2017, 2492
BcuI ACTAGT 2 cut(s) 1915, 1952
BfaI CTAG 6 cut(s) 371, 1458, 1644, 1916, 1953, 2684
BfmI CTRYAG 2 cut(s) 653, 1590
BfoI RGCGCY 1 cut(s) 1006
BfuI GTATCC 1 cut(s) 1290
BglI GCCNNNNNGGC 1 cut(s) 1659
BlpI GCTNAGC 1 cut(s) 2328
BmcAI AGTACT 1 cut(s) 2735
Bme1390I CCNGG 6 cut(s) 49, 942, 1044, 1257, 2485, 2697
Bme18I GGWCC 3 cut(s) 901, 938, 2018
BmeT110I CYCGRG 2 cut(s) 1068, 1317
BmgT120I GGNCC 7 cut(s) 217, 901, 938, 1244, 1260, 1261, 2018
BmiI GGNNCC 5 cut(s) 902, 990, 1261, 1262, 1682
BmrFI CCNGG 6 cut(s) 49, 942, 1044, 1257, 2485, 2697
BmrI ACTGGG 3 cut(s) 518, 803, 1160
BmsI GCATC 6 cut(s) 522, 967, 1523, 1551, 2578, 2602
BmuI ACTGGG 3 cut(s) 518, 803, 1160
BpiI GAAGAC 1 cut(s) 288
BplI GAGNNNNNCTC 4 cut(s) 143, 175, 1051, 1083
BpmI CTGGAG 2 cut(s) 1137, 2679
Bpu10I CCTNAGC 1 cut(s) 981
Bpu1102I GCTNAGC 1 cut(s) 2328
Bpu14I TTCGAA 1 cut(s) 309
BpuEI CTTGAG 2 cut(s) 414, 2794
BpuMI CCSGG 3 cut(s) 942, 1044, 2485
BsaHI GRCGYC 1 cut(s) 1373
BsaI GGTCTC 3 cut(s) 1314, 1729, 2017
BsaJI CCNNGG 7 cut(s) 350, 1256, 1272, 1543, 2234, 2425, 2484
BsaXI ACNNNNNCTCC 4 cut(s) 1831, 1861, 2742, 2772
Bsc4I CCNNNNNNNGG 7 cut(s) 530, 739, 1012, 1230, 1549, 1690, 2490
Bse118I RCCGGY 2 cut(s) 967, 2176
Bse1I ACTGG 6 cut(s) 513, 809, 1155, 1324, 2741, 2809
Bse21I CCTNAGG 1 cut(s) 160
BseBI CCWGG 3 cut(s) 49, 1257, 2697
BseDI CCNNGG 7 cut(s) 350, 1256, 1272, 1543, 2234, 2425, 2484
BseGI GGATG 9 cut(s) 115, 866, 982, 1538, 1703, 2008, 2256, 2593, 2710
BseLI CCNNNNNNNGG 7 cut(s) 530, 739, 1012, 1230, 1549, 1690, 2490
BseNI ACTGG 6 cut(s) 513, 809, 1155, 1324, 2741, 2809
BseRI GAGGAG 3 cut(s) 1220, 1530, 1699
BseSI GKGCMC 2 cut(s) 1264, 1301
BseXI GCAGC 7 cut(s) 370, 1364, 1698, 2006, 2074, 2103, 2467
Bsh1236I CGCG 1 cut(s) 910
BshFI GGCC 6 cut(s) 218, 998, 1245, 1262, 1542, 1653
BsiHKCI CYCGRG 2 cut(s) 1068, 1317
BsiSI CCGG 5 cut(s) 941, 968, 1043, 2177, 2484
BslFI GGGAC 5 cut(s) 1029, 1630, 1893, 2228, 2846
BslI CCNNNNNNNGG 7 cut(s) 530, 739, 1012, 1230, 1549, 1690, 2490
BsmAI GTCTC 9 cut(s) 419, 1273, 1314, 1341, 1364, 1729, 1943, 2017, 2492
BsmBI CGTCTC 2 cut(s) 1341, 1364
BsmFI GGGAC 5 cut(s) 1029, 1630, 1893, 2228, 2846
BsmI GAATGC 2 cut(s) 2106, 2482
BsnI GGCC 6 cut(s) 218, 998, 1245, 1262, 1542, 1653
Bso31I GGTCTC 3 cut(s) 1314, 1729, 2017
BsoBI CYCGRG 2 cut(s) 1068, 1317
Bsp119I TTCGAA 1 cut(s) 309
Bsp120I GGGCCC 1 cut(s) 1260
Bsp1286I GDGCHC 2 cut(s) 1264, 1301
Bsp143I GATC 8 cut(s) 142, 289, 294, 747, 1039, 1072, 1868, 2404
Bsp1720I GCTNAGC 1 cut(s) 2328
Bsp19I CCATGG 1 cut(s) 1543
BspACI CCGC 8 cut(s) 4, 760, 1006, 1013, 1155, 1654, 1684, 1853
BspANI GGCC 6 cut(s) 218, 998, 1245, 1262, 1542, 1653
BspFNI CGCG 1 cut(s) 910
BspHI TCATGA 1 cut(s) 2110
BspLI GGNNCC 5 cut(s) 902, 990, 1261, 1262, 1682
BspMAI CTGCAG 1 cut(s) 1594
BspPI GGATC 8 cut(s) 137, 297, 302, 742, 1034, 1080, 1876, 2412
BspT104I TTCGAA 1 cut(s) 309
BspTNI GGTCTC 3 cut(s) 1314, 1729, 2017
BsrBI CCGCTC 1 cut(s) 760
BsrFI RCCGGY 2 cut(s) 967, 2176
BsrI ACTGG 6 cut(s) 513, 809, 1155, 1324, 2741, 2809
BssAI RCCGGY 2 cut(s) 967, 2176
BssECI CCNNGG 7 cut(s) 350, 1256, 1272, 1543, 2234, 2425, 2484
BssMI GATC 8 cut(s) 142, 289, 294, 747, 1039, 1072, 1868, 2404
BssNI GRCGYC 1 cut(s) 1373
BssT1I CCWWGG 3 cut(s) 350, 1272, 1543
Bst2UI CCWGG 3 cut(s) 49, 1257, 2697
Bst4CI ACNGT 2 cut(s) 2429, 2640
Bst6I CTCTTC 1 cut(s) 1590
BstACI GRCGYC 1 cut(s) 1373
BstAPI GCANNNNNTGC 2 cut(s) 977, 2272
BstBI TTCGAA 1 cut(s) 309
BstC8I GCNNGC 6 cut(s) 486, 783, 1477, 2174, 2178, 2664
BstDSI CCRYGG 2 cut(s) 1543, 2425
BstEII GGTNACC 1 cut(s) 43
BstF5I GGATG 9 cut(s) 115, 866, 982, 1538, 1703, 2008, 2256, 2593, 2710
BstFNI CGCG 1 cut(s) 910
BstH2I RGCGCY 1 cut(s) 1006
BstHHI GCGC 2 cut(s) 1005, 1525
BstKTI GATC 8 cut(s) 145, 292, 297, 750, 1042, 1075, 1871, 2407
BstMAI GTCTC 9 cut(s) 419, 1273, 1314, 1341, 1364, 1729, 1943, 2017, 2492
BstMBI GATC 8 cut(s) 142, 289, 294, 747, 1039, 1072, 1868, 2404
BstMWI GCNNNNNNNGC 5 cut(s) 10, 977, 1358, 1659, 2272
BstNI CCWGG 3 cut(s) 49, 1257, 2697
BstPI GGTNACC 1 cut(s) 43
BstSCI CCNGG 6 cut(s) 47, 940, 1042, 1255, 2483, 2695
BstSFI CTRYAG 2 cut(s) 653, 1590
BstSLI GKGCMC 2 cut(s) 1264, 1301
BstUI CGCG 1 cut(s) 910
BstV1I GCAGC 7 cut(s) 370, 1364, 1698, 2006, 2074, 2103, 2467
BstV2I GAAGAC 1 cut(s) 288
BstX2I RGATCY 4 cut(s) 142, 294, 1072, 1868
BstXI CCANNNNNNTGG 1 cut(s) 861
BstYI RGATCY 4 cut(s) 142, 294, 1072, 1868
Bsu36I CCTNAGG 1 cut(s) 160
BsuI GTATCC 1 cut(s) 1290
BsuRI GGCC 6 cut(s) 218, 998, 1245, 1262, 1542, 1653
BtgI CCRYGG 2 cut(s) 1543, 2425
BtgZI GCGATG 1 cut(s) 1494
BtsCI GGATG 9 cut(s) 115, 866, 982, 1538, 1703, 2008, 2256, 2593, 2710
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 3 cut(s) 559, 2401, 2767
Cac8I GCNNGC 6 cut(s) 486, 783, 1477, 2174, 2178, 2664
CciI TCATGA 1 cut(s) 2110
CfoI GCGC 2 cut(s) 1005, 1525
Cfr10I RCCGGY 2 cut(s) 967, 2176
Cfr13I GGNCC 7 cut(s) 217, 901, 938, 1244, 1260, 1261, 2018
CseI GACGC 2 cut(s) 1358, 2124
CsiI ACCWGGT 1 cut(s) 47
Csp6I GTAC 5 cut(s) 52, 728, 1898, 2286, 2734
CviAII CATG 6 cut(s) 710, 1313, 1544, 1971, 2031, 2111
CviQI GTAC 5 cut(s) 52, 728, 1898, 2286, 2734
DpnI GATC 8 cut(s) 144, 291, 296, 749, 1041, 1074, 1870, 2406
DpnII GATC 8 cut(s) 142, 289, 294, 747, 1039, 1072, 1868, 2404
DraI TTTAAA 1 cut(s) 2670
DrdI GACNNNNNNGTC 1 cut(s) 1735
DseDI GACNNNNNNGTC 1 cut(s) 1735
EaeI YGGCCR 1 cut(s) 996
Eam1104I CTCTTC 1 cut(s) 1590
EarI CTCTTC 1 cut(s) 1590
Eco130I CCWWGG 3 cut(s) 350, 1272, 1543
Eco24I GRGCYC 1 cut(s) 1264
Eco31I GGTCTC 3 cut(s) 1314, 1729, 2017
Eco32I GATATC 1 cut(s) 2607
Eco47I GGWCC 3 cut(s) 901, 938, 2018
Eco57I CTGAAG 1 cut(s) 2538
Eco81I CCTNAGG 1 cut(s) 160
Eco88I CYCGRG 2 cut(s) 1068, 1317
Eco91I GGTNACC 1 cut(s) 43
EcoO109I RGGNCCY 3 cut(s) 217, 1260, 2018
EcoO65I GGTNACC 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 1438
EcoRII CCWGG 3 cut(s) 47, 1255, 2695
EcoRV GATATC 1 cut(s) 2607
EcoT14I CCWWGG 3 cut(s) 350, 1272, 1543
EcoT38I GRGCYC 1 cut(s) 1264
ErhI CCWWGG 3 cut(s) 350, 1272, 1543
Esp3I CGTCTC 2 cut(s) 1341, 1364
FaeI CATG 6 cut(s) 713, 1316, 1547, 1974, 2034, 2114
FalI AAGNNNNNCTT 2 cut(s) 1887, 1919
FaqI GGGAC 5 cut(s) 1029, 1630, 1893, 2228, 2846
FatI CATG 6 cut(s) 709, 1312, 1543, 1970, 2030, 2110
FauI CCCGC 2 cut(s) 1006, 1148
FauNDI CATATG 1 cut(s) 2571
FblI GTMKAC 1 cut(s) 502
FokI GGATG 9 cut(s) 122, 873, 989, 1545, 1690, 2015, 2263, 2600, 2717
FriOI GRGCYC 1 cut(s) 1264
FspBI CTAG 6 cut(s) 371, 1458, 1644, 1916, 1953, 2684
GlaI GCGC 2 cut(s) 1004, 1524
GsuI CTGGAG 2 cut(s) 1137, 2679
HaeII RGCGCY 1 cut(s) 1006
HaeIII GGCC 6 cut(s) 218, 998, 1245, 1262, 1542, 1653
HapII CCGG 5 cut(s) 941, 968, 1043, 2177, 2484
HgaI GACGC 2 cut(s) 1358, 2124
HhaI GCGC 2 cut(s) 1005, 1525
Hin1I GRCGYC 1 cut(s) 1373
Hin1II CATG 6 cut(s) 713, 1316, 1547, 1974, 2034, 2114
Hin6I GCGC 2 cut(s) 1003, 1523
HinP1I GCGC 2 cut(s) 1003, 1523
HincII GTYRAC 3 cut(s) 1221, 2636, 2802
HindII GTYRAC 3 cut(s) 1221, 2636, 2802
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 8 cut(s) 94, 284, 311, 427, 561, 1064, 1406, 1907
HpaII CCGG 5 cut(s) 941, 968, 1043, 2177, 2484
HphI GGTGA 4 cut(s) 262, 274, 1039, 2663
Hpy166II GTNNAC 7 cut(s) 503, 728, 842, 1221, 2028, 2636, 2802
Hpy8I GTNNAC 7 cut(s) 503, 728, 842, 1221, 2028, 2636, 2802
HpyCH4III ACNGT 2 cut(s) 2429, 2640
HpyCH4IV ACGT 3 cut(s) 238, 634, 1373
HpyCH4V TGCA 8 cut(s) 101, 488, 1536, 1592, 1994, 2119, 2266, 2435
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 977, 1358, 1659, 2272
HpySE526I ACGT 3 cut(s) 238, 634, 1373
Hsp92I GRCGYC 1 cut(s) 1373
Hsp92II CATG 6 cut(s) 713, 1316, 1547, 1974, 2034, 2114
HspAI GCGC 2 cut(s) 1003, 1523
KroI GCCGGC 1 cut(s) 2176
KroNI GCCGGC 1 cut(s) 2178
Kzo9I GATC 8 cut(s) 142, 289, 294, 747, 1039, 1072, 1868, 2404
LmnI GCTCC 7 cut(s) 395, 988, 1680, 2132, 2203, 2698, 2792
Lsp1109I GCAGC 7 cut(s) 370, 1364, 1698, 2006, 2074, 2103, 2467
LweI GCATC 6 cut(s) 522, 967, 1523, 1551, 2578, 2602
MabI ACCWGGT 1 cut(s) 47
MaeI CTAG 6 cut(s) 371, 1458, 1644, 1916, 1953, 2684
MaeII ACGT 3 cut(s) 238, 634, 1373
MaeIII GTNAC 5 cut(s) 43, 589, 1955, 2564, 2762
MalI GATC 8 cut(s) 144, 291, 296, 749, 1041, 1074, 1870, 2406
MbiI CCGCTC 1 cut(s) 760
MboI GATC 8 cut(s) 142, 289, 294, 747, 1039, 1072, 1868, 2404
MfeI CAATTG 2 cut(s) 102, 624
MflI RGATCY 4 cut(s) 142, 294, 1072, 1868
MhlI GDGCHC 2 cut(s) 1264, 1301
MlsI TGGCCA 1 cut(s) 998
MluNI TGGCCA 1 cut(s) 998
MlyI GAGTC 3 cut(s) 278, 421, 1901
MmeI TCCRAC 2 cut(s) 858, 2443
Mox20I TGGCCA 1 cut(s) 998
MroNI GCCGGC 1 cut(s) 2176
MroXI GAANNNNTTC 1 cut(s) 2314
MscI TGGCCA 1 cut(s) 998
MslI CAYNNNNRTG 3 cut(s) 1887, 2124, 2430
Msp20I TGGCCA 1 cut(s) 998
MspA1I CMGCKG 1 cut(s) 658
MspI CCGG 5 cut(s) 941, 968, 1043, 2177, 2484
MspR9I CCNGG 6 cut(s) 49, 942, 1044, 1257, 2485, 2697
MunI CAATTG 2 cut(s) 102, 624
Mva1269I GAATGC 2 cut(s) 2106, 2482
MvaI CCWGG 3 cut(s) 49, 1257, 2697
MvnI CGCG 1 cut(s) 910
MwoI GCNNNNNNNGC 5 cut(s) 10, 977, 1358, 1659, 2272
NaeI GCCGGC 1 cut(s) 2178
NciI CCSGG 3 cut(s) 942, 1044, 2485
NcoI CCATGG 1 cut(s) 1543
NdeI CATATG 1 cut(s) 2571
NdeII GATC 8 cut(s) 142, 289, 294, 747, 1039, 1072, 1868, 2404
NgoMIV GCCGGC 1 cut(s) 2176
NlaIII CATG 6 cut(s) 713, 1316, 1547, 1974, 2034, 2114
NlaIV GGNNCC 5 cut(s) 902, 990, 1261, 1262, 1682
NmuCI GTSAC 2 cut(s) 589, 2762
NspV TTCGAA 1 cut(s) 309
PagI TCATGA 1 cut(s) 2110
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 2 cut(s) 2106, 2482
PdiI GCCGGC 1 cut(s) 2178
PdmI GAANNNNTTC 1 cut(s) 2314
PfeI GAWTC 5 cut(s) 94, 311, 561, 1064, 1406
PfoI TCCNGGA 3 cut(s) 940, 1042, 2695
PleI GAGTC 3 cut(s) 278, 421, 1901
PpsI GAGTC 3 cut(s) 278, 421, 1901
PpuMI RGGWCCY 1 cut(s) 2018
PshBI ATTAAT 3 cut(s) 1251, 2342, 2811
PsiI TTATAA 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 2018
Psp6I CCWGG 3 cut(s) 47, 1255, 2695
PspEI GGTNACC 1 cut(s) 43
PspGI CCWGG 3 cut(s) 47, 1255, 2695
PspN4I GGNNCC 5 cut(s) 902, 990, 1261, 1262, 1682
PspOMI GGGCCC 1 cut(s) 1260
PspPI GGNCC 7 cut(s) 217, 901, 938, 1244, 1260, 1261, 2018
PspPPI RGGWCCY 1 cut(s) 2018
PstI CTGCAG 1 cut(s) 1594
PsuI RGATCY 4 cut(s) 142, 294, 1072, 1868
PvuII CAGCTG 1 cut(s) 658
RsaI GTAC 5 cut(s) 53, 729, 1899, 2287, 2735
RsaNI GTAC 5 cut(s) 52, 728, 1898, 2286, 2734
RseI CAYNNNNRTG 3 cut(s) 1887, 2124, 2430
Sau3AI GATC 8 cut(s) 142, 289, 294, 747, 1039, 1072, 1868, 2404
Sau96I GGNCC 7 cut(s) 217, 901, 938, 1244, 1260, 1261, 2018
ScaI AGTACT 1 cut(s) 2735
SchI GAGTC 3 cut(s) 278, 421, 1901
ScrFI CCNGG 6 cut(s) 49, 942, 1044, 1257, 2485, 2697
SduI GDGCHC 2 cut(s) 1264, 1301
SexAI ACCWGGT 1 cut(s) 47
SfaNI GCATC 6 cut(s) 522, 967, 1523, 1551, 2578, 2602
SfcI CTRYAG 2 cut(s) 653, 1590
SfuI TTCGAA 1 cut(s) 309
SinI GGWCC 3 cut(s) 901, 938, 2018
SmiMI CAYNNNNRTG 3 cut(s) 1887, 2124, 2430
SmlI CTYRAG 2 cut(s) 429, 2773
SmoI CTYRAG 2 cut(s) 429, 2773
SpeI ACTAGT 2 cut(s) 1915, 1952
SsiI CCGC 8 cut(s) 4, 760, 1006, 1013, 1155, 1654, 1684, 1853
SspI AATATT 3 cut(s) 1759, 2230, 2545
SspMI CTAG 6 cut(s) 371, 1458, 1644, 1916, 1953, 2684
StyD4I CCNGG 6 cut(s) 47, 940, 1042, 1255, 2483, 2695
StyI CCWWGG 3 cut(s) 350, 1272, 1543
TaaI ACNGT 2 cut(s) 2429, 2640
TaiI ACGT 3 cut(s) 241, 637, 1376
TaqI TCGA 8 cut(s) 138, 309, 451, 1559, 1586, 1727, 1739, 2449
TaqII GACCGA 3 cut(s) 1127, 1238, 1711
TatI WGTACW 4 cut(s) 727, 1897, 2285, 2733
TauI GCSGC 3 cut(s) 1008, 1656, 1686
TfiI GAWTC 5 cut(s) 94, 311, 561, 1064, 1406
TscAI CASTG 3 cut(s) 559, 2401, 2767
TseFI GTSAC 2 cut(s) 589, 2762
TseI GCWGC 7 cut(s) 383, 1352, 1686, 1994, 2087, 2116, 2480
Tsp45I GTSAC 2 cut(s) 589, 2762
TspDTI ATGAA 9 cut(s) 681, 1959, 2099, 2267, 2367, 2489, 2633, 2658, 2802
TspGWI ACGGA 1 cut(s) 962
TspRI CASTG 3 cut(s) 559, 2401, 2767
VpaK11BI GGWCC 3 cut(s) 901, 938, 2018
VspI ATTAAT 3 cut(s) 1251, 2342, 2811
XapI RAATTY 4 cut(s) 84, 1189, 1438, 2313
XbaI TCTAGA 2 cut(s) 1457, 2683
XcmI CCANNNNNNNNNTGG 2 cut(s) 606, 716
XmiI GTMKAC 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 2314
XspI CTAG 6 cut(s) 371, 1458, 1644, 1916, 1953, 2684
ZraI GACGTC 1 cut(s) 1374
ZrmI AGTACT 1 cut(s) 2735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.