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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 751 |
| AccB1I | GGYRCC | 1 cut(s) | 100 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 23, 383 |
| AciI | CCGC | 2 cut(s) | 50, 329 |
| AclI | AACGTT | 1 cut(s) | 763 |
| AclWI | GGATC | 1 cut(s) | 248 |
| AcoI | YGGCCR | 1 cut(s) | 82 |
| AcuI | CTGAAG | 1 cut(s) | 234 |
| AfaI | GTAC | 2 cut(s) | 684, 912 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 23, 110, 383, 807 |
| AgsI | TTSAA | 4 cut(s) | 186, 235, 760, 890 |
| AjiI | CACGTC | 2 cut(s) | 466, 538 |
| AjnI | CCWGG | 4 cut(s) | 238, 278, 376, 850 |
| AluBI | AGCT | 5 cut(s) | 264, 271, 512, 571, 604 |
| AluI | AGCT | 5 cut(s) | 264, 271, 512, 571, 604 |
| Alw26I | GTCTC | 1 cut(s) | 777 |
| AlwI | GGATC | 1 cut(s) | 248 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 257 |
| AoxI | GGCC | 5 cut(s) | 13, 82, 92, 281, 881 |
| ApaI | GGGCCC | 1 cut(s) | 885 |
| ApeKI | GCWGC | 2 cut(s) | 268, 601 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 381, 413 |
| AspS9I | GGNCC | 5 cut(s) | 14, 92, 389, 881, 882 |
| AsuC2I | CCSGG | 1 cut(s) | 155 |
| AsuHPI | GGTGA | 6 cut(s) | 128, 449, 485, 641, 828, 881 |
| AvaII | GGWCC | 1 cut(s) | 389 |
| BaeGI | GKGCMC | 1 cut(s) | 885 |
| BanI | GGYRCC | 1 cut(s) | 100 |
| BanII | GRGCYC | 1 cut(s) | 885 |
| BbvI | GCAGC | 2 cut(s) | 280, 613 |
| BccI | CCATC | 4 cut(s) | 5, 71, 113, 353 |
| BciT130I | CCWGG | 4 cut(s) | 240, 280, 378, 852 |
| BcnI | CCSGG | 1 cut(s) | 155 |
| BcoDI | GTCTC | 1 cut(s) | 777 |
| BfaI | CTAG | 1 cut(s) | 747 |
| BfmI | CTRYAG | 2 cut(s) | 69, 216 |
| BisI | GCNGC | 3 cut(s) | 51, 269, 602 |
| BlsI | GCNGC | 3 cut(s) | 52, 270, 603 |
| Bme1390I | CCNGG | 5 cut(s) | 155, 240, 280, 378, 852 |
| Bme18I | GGWCC | 1 cut(s) | 389 |
| BmgBI | CACGTC | 2 cut(s) | 466, 538 |
| BmgT120I | GGNCC | 5 cut(s) | 14, 92, 389, 881, 882 |
| BmiI | GGNNCC | 2 cut(s) | 102, 883 |
| BmrFI | CCNGG | 5 cut(s) | 155, 240, 280, 378, 852 |
| BmrI | ACTGGG | 1 cut(s) | 816 |
| BmuI | ACTGGG | 1 cut(s) | 816 |
| BoxI | GACNNNNGTC | 1 cut(s) | 453 |
| BpmI | CTGGAG | 1 cut(s) | 360 |
| Bpu10I | CCTNAGC | 1 cut(s) | 777 |
| BpuMI | CCSGG | 1 cut(s) | 155 |
| BsaI | GGTCTC | 1 cut(s) | 777 |
| BsaJI | CCNNGG | 2 cut(s) | 239, 865 |
| BsaWI | WCCGGW | 1 cut(s) | 97 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 23, 110, 383, 807 |
| Bse1I | ACTGG | 2 cut(s) | 537, 811 |
| BseBI | CCWGG | 4 cut(s) | 240, 280, 378, 852 |
| BseDI | CCNNGG | 2 cut(s) | 239, 865 |
| BseGI | GGATG | 3 cut(s) | 46, 139, 661 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 23, 110, 383, 807 |
| BseNI | ACTGG | 2 cut(s) | 537, 811 |
| BseSI | GKGCMC | 1 cut(s) | 885 |
| BseXI | GCAGC | 2 cut(s) | 280, 613 |
| BshFI | GGCC | 5 cut(s) | 15, 84, 94, 283, 883 |
| BshNI | GGYRCC | 1 cut(s) | 100 |
| BsiSI | CCGG | 4 cut(s) | 85, 98, 104, 155 |
| BslFI | GGGAC | 2 cut(s) | 43, 692 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 23, 110, 383, 807 |
| BsmAI | GTCTC | 1 cut(s) | 777 |
| BsmFI | GGGAC | 2 cut(s) | 43, 692 |
| BsmI | GAATGC | 2 cut(s) | 181, 331 |
| BsnI | GGCC | 5 cut(s) | 15, 84, 94, 283, 883 |
| Bso31I | GGTCTC | 1 cut(s) | 777 |
| Bsp120I | GGGCCC | 1 cut(s) | 881 |
| Bsp1286I | GDGCHC | 1 cut(s) | 885 |
| Bsp1407I | TGTACA | 1 cut(s) | 910 |
| Bsp143I | GATC | 2 cut(s) | 108, 253 |
| BspACI | CCGC | 2 cut(s) | 50, 329 |
| BspANI | GGCC | 5 cut(s) | 15, 84, 94, 283, 883 |
| BspLI | GGNNCC | 2 cut(s) | 102, 883 |
| BspMAI | CTGCAG | 1 cut(s) | 73 |
| BspPI | GGATC | 1 cut(s) | 248 |
| BspT107I | GGYRCC | 1 cut(s) | 100 |
| BspTNI | GGTCTC | 1 cut(s) | 777 |
| BsrGI | TGTACA | 1 cut(s) | 910 |
| BsrI | ACTGG | 2 cut(s) | 537, 811 |
| BssECI | CCNNGG | 2 cut(s) | 239, 865 |
| BssMI | GATC | 2 cut(s) | 108, 253 |
| BssT1I | CCWWGG | 1 cut(s) | 865 |
| Bst2UI | CCWGG | 4 cut(s) | 240, 280, 378, 852 |
| Bst4CI | ACNGT | 3 cut(s) | 34, 220, 832 |
| Bst6I | CTCTTC | 1 cut(s) | 839 |
| BstAUI | TGTACA | 1 cut(s) | 910 |
| BstC8I | GCNNGC | 2 cut(s) | 266, 560 |
| BstDEI | CTNAG | 3 cut(s) | 572, 777, 840 |
| BstF5I | GGATG | 3 cut(s) | 46, 139, 661 |
| BstKTI | GATC | 2 cut(s) | 111, 256 |
| BstMAI | GTCTC | 1 cut(s) | 777 |
| BstMBI | GATC | 2 cut(s) | 108, 253 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 100, 289, 568, 610 |
| BstNI | CCWGG | 4 cut(s) | 240, 280, 378, 852 |
| BstNSI | RCATGY | 2 cut(s) | 613, 641 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 453 |
| BstSCI | CCNGG | 5 cut(s) | 153, 238, 278, 376, 850 |
| BstSFI | CTRYAG | 2 cut(s) | 69, 216 |
| BstSLI | GKGCMC | 1 cut(s) | 885 |
| BstV1I | GCAGC | 2 cut(s) | 280, 613 |
| BstX2I | RGATCY | 1 cut(s) | 253 |
| BstYI | RGATCY | 1 cut(s) | 253 |
| BsuRI | GGCC | 5 cut(s) | 15, 84, 94, 283, 883 |
| BtrI | CACGTC | 2 cut(s) | 466, 538 |
| BtsCI | GGATG | 3 cut(s) | 46, 139, 661 |
| Cac8I | GCNNGC | 2 cut(s) | 266, 560 |
| CaiI | CAGNNNCTG | 1 cut(s) | 257 |
| Cfr13I | GGNCC | 5 cut(s) | 14, 92, 389, 881, 882 |
| CseI | GACGC | 1 cut(s) | 153 |
| Csp6I | GTAC | 2 cut(s) | 683, 911 |
| CviQI | GTAC | 2 cut(s) | 683, 911 |
| DdeI | CTNAG | 3 cut(s) | 572, 777, 840 |
| DpnI | GATC | 2 cut(s) | 110, 255 |
| DpnII | GATC | 2 cut(s) | 108, 253 |
| DraI | TTTAAA | 1 cut(s) | 429 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 751 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 751 |
| EaeI | YGGCCR | 1 cut(s) | 82 |
| Eam1104I | CTCTTC | 1 cut(s) | 839 |
| EarI | CTCTTC | 1 cut(s) | 839 |
| Eco130I | CCWWGG | 1 cut(s) | 865 |
| Eco147I | AGGCCT | 1 cut(s) | 283 |
| Eco24I | GRGCYC | 1 cut(s) | 885 |
| Eco31I | GGTCTC | 1 cut(s) | 777 |
| Eco47I | GGWCC | 1 cut(s) | 389 |
| Eco57I | CTGAAG | 1 cut(s) | 234 |
| EcoO109I | RGGNCCY | 2 cut(s) | 92, 881 |
| EcoRII | CCWGG | 4 cut(s) | 238, 278, 376, 850 |
| EcoT14I | CCWWGG | 1 cut(s) | 865 |
| EcoT22I | ATGCAT | 2 cut(s) | 615, 639 |
| EcoT38I | GRGCYC | 1 cut(s) | 885 |
| ErhI | CCWWGG | 1 cut(s) | 865 |
| FaqI | GGGAC | 2 cut(s) | 43, 692 |
| Fnu4HI | GCNGC | 3 cut(s) | 51, 269, 602 |
| FokI | GGATG | 3 cut(s) | 53, 146, 668 |
| FriOI | GRGCYC | 1 cut(s) | 885 |
| Fsp4HI | GCNGC | 3 cut(s) | 51, 269, 602 |
| FspBI | CTAG | 1 cut(s) | 747 |
| GluI | GCNGC | 3 cut(s) | 51, 269, 602 |
| GsuI | CTGGAG | 1 cut(s) | 360 |
| HaeIII | GGCC | 5 cut(s) | 15, 84, 94, 283, 883 |
| HapII | CCGG | 4 cut(s) | 85, 98, 104, 155 |
| HgaI | GACGC | 1 cut(s) | 153 |
| HincII | GTYRAC | 1 cut(s) | 339 |
| HindII | GTYRAC | 1 cut(s) | 339 |
| HindIII | AAGCTT | 1 cut(s) | 569 |
| HinfI | GANTC | 2 cut(s) | 752, 847 |
| HpaII | CCGG | 4 cut(s) | 85, 98, 104, 155 |
| HphI | GGTGA | 6 cut(s) | 128, 449, 485, 641, 828, 881 |
| Hpy166II | GTNNAC | 4 cut(s) | 304, 339, 389, 463 |
| Hpy188I | TCNGA | 1 cut(s) | 253 |
| Hpy188III | TCNNGA | 1 cut(s) | 257 |
| Hpy8I | GTNNAC | 4 cut(s) | 304, 339, 389, 463 |
| Hpy99I | CGWCG | 1 cut(s) | 169 |
| HpyCH4III | ACNGT | 3 cut(s) | 34, 220, 832 |
| HpyCH4IV | ACGT | 6 cut(s) | 417, 465, 537, 681, 699, 763 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 100, 289, 568, 610 |
| HpyF3I | CTNAG | 3 cut(s) | 572, 777, 840 |
| HpySE526I | ACGT | 6 cut(s) | 417, 465, 537, 681, 699, 763 |
| Kzo9I | GATC | 2 cut(s) | 108, 253 |
| LmnI | GCTCC | 3 cut(s) | 379, 509, 854 |
| Lsp1109I | GCAGC | 2 cut(s) | 280, 613 |
| MaeI | CTAG | 1 cut(s) | 747 |
| MaeII | ACGT | 6 cut(s) | 417, 465, 537, 681, 699, 763 |
| MaeIII | GTNAC | 1 cut(s) | 826 |
| MalI | GATC | 2 cut(s) | 110, 255 |
| MboI | GATC | 2 cut(s) | 108, 253 |
| MboII | GAAGA | 4 cut(s) | 72, 240, 334, 856 |
| MflI | RGATCY | 1 cut(s) | 253 |
| MhlI | GDGCHC | 1 cut(s) | 885 |
| MluCI | AATT | 1 cut(s) | 396 |
| MlyI | GAGTC | 2 cut(s) | 761, 856 |
| MnlI | CCTC | 8 cut(s) | 105, 183, 205, 433, 469, 475, 547, 573 |
| Mph1103I | ATGCAT | 2 cut(s) | 615, 639 |
| MseI | TTAA | 8 cut(s) | 128, 174, 225, 287, 351, 428, 620, 876 |
| MslI | CAYNNNNRTG | 2 cut(s) | 297, 654 |
| MspA1I | CMGCKG | 1 cut(s) | 271 |
| MspI | CCGG | 4 cut(s) | 85, 98, 104, 155 |
| MspR9I | CCNGG | 5 cut(s) | 155, 240, 280, 378, 852 |
| Mva1269I | GAATGC | 2 cut(s) | 181, 331 |
| MvaI | CCWGG | 4 cut(s) | 240, 280, 378, 852 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 100, 289, 568, 610 |
| NciI | CCSGG | 1 cut(s) | 155 |
| NdeII | GATC | 2 cut(s) | 108, 253 |
| NlaIV | GGNNCC | 2 cut(s) | 102, 883 |
| NsiI | ATGCAT | 2 cut(s) | 615, 639 |
| NspI | RCATGY | 2 cut(s) | 613, 641 |
| PceI | AGGCCT | 1 cut(s) | 283 |
| PctI | GAATGC | 2 cut(s) | 181, 331 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 23, 383 |
| PfoI | TCCNGGA | 2 cut(s) | 376, 850 |
| PkrI | GCNGC | 3 cut(s) | 52, 270, 603 |
| PleI | GAGTC | 2 cut(s) | 760, 855 |
| PpsI | GAGTC | 2 cut(s) | 760, 855 |
| PshAI | GACNNNNGTC | 1 cut(s) | 453 |
| Psp1406I | AACGTT | 1 cut(s) | 763 |
| Psp6I | CCWGG | 4 cut(s) | 238, 278, 376, 850 |
| PspGI | CCWGG | 4 cut(s) | 238, 278, 376, 850 |
| PspN4I | GGNNCC | 2 cut(s) | 102, 883 |
| PspOMI | GGGCCC | 1 cut(s) | 881 |
| PspPI | GGNCC | 5 cut(s) | 14, 92, 389, 881, 882 |
| PstI | CTGCAG | 1 cut(s) | 73 |
| PstNI | CAGNNNCTG | 1 cut(s) | 257 |
| PsuI | RGATCY | 1 cut(s) | 253 |
| PvuII | CAGCTG | 1 cut(s) | 271 |
| RsaI | GTAC | 2 cut(s) | 684, 912 |
| RsaNI | GTAC | 2 cut(s) | 683, 911 |
| RseI | CAYNNNNRTG | 2 cut(s) | 297, 654 |
| SaqAI | TTAA | 8 cut(s) | 128, 174, 225, 287, 351, 428, 620, 876 |
| SatI | GCNGC | 3 cut(s) | 51, 269, 602 |
| Sau3AI | GATC | 2 cut(s) | 108, 253 |
| Sau96I | GGNCC | 5 cut(s) | 14, 92, 389, 881, 882 |
| SchI | GAGTC | 2 cut(s) | 761, 856 |
| ScrFI | CCNGG | 5 cut(s) | 155, 240, 280, 378, 852 |
| SduI | GDGCHC | 1 cut(s) | 885 |
| SfcI | CTRYAG | 2 cut(s) | 69, 216 |
| SinI | GGWCC | 1 cut(s) | 389 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 297, 654 |
| Sse9I | AATT | 1 cut(s) | 396 |
| SseBI | AGGCCT | 1 cut(s) | 283 |
| SsiI | CCGC | 2 cut(s) | 50, 329 |
| SspMI | CTAG | 1 cut(s) | 747 |
| StuI | AGGCCT | 1 cut(s) | 283 |
| StyD4I | CCNGG | 5 cut(s) | 153, 238, 278, 376, 850 |
| StyI | CCWWGG | 1 cut(s) | 865 |
| TaaI | ACNGT | 3 cut(s) | 34, 220, 832 |
| TaiI | ACGT | 6 cut(s) | 420, 468, 540, 684, 702, 766 |
| TaqI | TCGA | 1 cut(s) | 447 |
| TasI | AATT | 1 cut(s) | 396 |
| TatI | WGTACW | 1 cut(s) | 910 |
| TauI | GCSGC | 1 cut(s) | 53 |
| Tru1I | TTAA | 8 cut(s) | 128, 174, 225, 287, 351, 428, 620, 876 |
| Tru9I | TTAA | 8 cut(s) | 128, 174, 225, 287, 351, 428, 620, 876 |
| TseI | GCWGC | 2 cut(s) | 268, 601 |
| TspDTI | ATGAA | 2 cut(s) | 57, 579 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 23, 383 |
| VpaK11BI | GGWCC | 1 cut(s) | 389 |
| XceI | RCATGY | 2 cut(s) | 613, 641 |
| XspI | CTAG | 1 cut(s) | 747 |
| Zsp2I | ATGCAT | 2 cut(s) | 615, 639 |