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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 559 |
| AclWI | GGATC | 2 cut(s) | 418, 454 |
| AcoI | YGGCCR | 3 cut(s) | 374, 436, 483 |
| AcsI | RAATTY | 1 cut(s) | 124 |
| AfaI | GTAC | 2 cut(s) | 183, 477 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 117, 137, 138, 154, 306, 332 |
| AgeI | ACCGGT | 1 cut(s) | 299 |
| AjnI | CCWGG | 2 cut(s) | 59, 293 |
| Alw21I | GWGCWC | 3 cut(s) | 59, 208, 275 |
| Alw26I | GTCTC | 1 cut(s) | 22 |
| Alw44I | GTGCAC | 1 cut(s) | 204 |
| AlwI | GGATC | 2 cut(s) | 418, 454 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 263 |
| AoxI | GGCC | 7 cut(s) | 119, 266, 374, 436, 483, 567, 593 |
| ApaLI | GTGCAC | 1 cut(s) | 204 |
| ApoI | RAATTY | 1 cut(s) | 124 |
| AsiGI | ACCGGT | 1 cut(s) | 299 |
| AspLEI | GCGC | 3 cut(s) | 99, 235, 505 |
| AspS9I | GGNCC | 6 cut(s) | 108, 119, 145, 266, 297, 317 |
| AsuC2I | CCSGG | 1 cut(s) | 50 |
| AsuHPI | GGTGA | 1 cut(s) | 43 |
| AvaII | GGWCC | 4 cut(s) | 108, 145, 297, 317 |
| BaeGI | GKGCMC | 2 cut(s) | 208, 312 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 173, 206 |
| BalI | TGGCCA | 2 cut(s) | 376, 438 |
| BanII | GRGCYC | 1 cut(s) | 50 |
| Bbv12I | GWGCWC | 3 cut(s) | 59, 208, 275 |
| BccI | CCATC | 4 cut(s) | 212, 232, 322, 335 |
| BceAI | ACGGC | 2 cut(s) | 498, 516 |
| BciT130I | CCWGG | 2 cut(s) | 61, 295 |
| BcnI | CCSGG | 1 cut(s) | 50 |
| BcoDI | GTCTC | 1 cut(s) | 22 |
| BfaI | CTAG | 1 cut(s) | 153 |
| Bme1390I | CCNGG | 3 cut(s) | 50, 61, 295 |
| Bme18I | GGWCC | 4 cut(s) | 108, 145, 297, 317 |
| BmgT120I | GGNCC | 6 cut(s) | 108, 119, 145, 266, 297, 317 |
| BmiI | GGNNCC | 1 cut(s) | 120 |
| BmrFI | CCNGG | 3 cut(s) | 50, 61, 295 |
| BpmI | CTGGAG | 2 cut(s) | 206, 354 |
| BpuMI | CCSGG | 1 cut(s) | 50 |
| BsaJI | CCNNGG | 2 cut(s) | 111, 386 |
| BsaWI | WCCGGW | 1 cut(s) | 299 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 85, 115, 165, 195 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 117, 137, 138, 154, 306, 332 |
| Bse118I | RCCGGY | 1 cut(s) | 299 |
| Bse1I | ACTGG | 3 cut(s) | 70, 148, 189 |
| BseBI | CCWGG | 2 cut(s) | 61, 295 |
| BseDI | CCNNGG | 2 cut(s) | 111, 386 |
| BseGI | GGATG | 4 cut(s) | 217, 223, 232, 346 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 117, 137, 138, 154, 306, 332 |
| BseMII | CTCAG | 2 cut(s) | 435, 588 |
| BseNI | ACTGG | 3 cut(s) | 70, 148, 189 |
| BseRI | GAGGAG | 2 cut(s) | 20, 257 |
| BseSI | GKGCMC | 2 cut(s) | 208, 312 |
| BseYI | CCCAGC | 1 cut(s) | 263 |
| BshFI | GGCC | 7 cut(s) | 121, 268, 376, 438, 485, 569, 595 |
| BshTI | ACCGGT | 1 cut(s) | 299 |
| BsiHKAI | GWGCWC | 3 cut(s) | 59, 208, 275 |
| BsiSI | CCGG | 2 cut(s) | 50, 300 |
| BslFI | GGGAC | 1 cut(s) | 529 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 117, 137, 138, 154, 306, 332 |
| BsmAI | GTCTC | 1 cut(s) | 22 |
| BsmFI | GGGAC | 1 cut(s) | 529 |
| BsnI | GGCC | 7 cut(s) | 121, 268, 376, 438, 485, 569, 595 |
| Bsp1286I | GDGCHC | 5 cut(s) | 50, 59, 208, 275, 312 |
| Bsp143I | GATC | 3 cut(s) | 199, 410, 446 |
| Bsp19I | CCATGG | 1 cut(s) | 111 |
| BspACI | CCGC | 1 cut(s) | 559 |
| BspANI | GGCC | 7 cut(s) | 121, 268, 376, 438, 485, 569, 595 |
| BspCNI | CTCAG | 2 cut(s) | 434, 589 |
| BspLI | GGNNCC | 1 cut(s) | 120 |
| BspPI | GGATC | 2 cut(s) | 418, 454 |
| BsrFI | RCCGGY | 1 cut(s) | 299 |
| BsrI | ACTGG | 3 cut(s) | 70, 148, 189 |
| BssAI | RCCGGY | 1 cut(s) | 299 |
| BssECI | CCNNGG | 2 cut(s) | 111, 386 |
| BssMI | GATC | 3 cut(s) | 199, 410, 446 |
| BssT1I | CCWWGG | 1 cut(s) | 111 |
| Bst2UI | CCWGG | 2 cut(s) | 61, 295 |
| Bst4CI | ACNGT | 2 cut(s) | 285, 314 |
| BstC8I | GCNNGC | 1 cut(s) | 567 |
| BstDEI | CTNAG | 2 cut(s) | 421, 597 |
| BstDSI | CCRYGG | 2 cut(s) | 111, 386 |
| BstF5I | GGATG | 4 cut(s) | 217, 223, 232, 346 |
| BstHHI | GCGC | 3 cut(s) | 99, 235, 505 |
| BstKTI | GATC | 3 cut(s) | 202, 413, 449 |
| BstMAI | GTCTC | 1 cut(s) | 22 |
| BstMBI | GATC | 3 cut(s) | 199, 410, 446 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 54 |
| BstNI | CCWGG | 2 cut(s) | 61, 295 |
| BstSCI | CCNGG | 3 cut(s) | 48, 59, 293 |
| BstSLI | GKGCMC | 2 cut(s) | 208, 312 |
| BstX2I | RGATCY | 1 cut(s) | 446 |
| BstYI | RGATCY | 1 cut(s) | 446 |
| BsuRI | GGCC | 7 cut(s) | 121, 268, 376, 438, 485, 569, 595 |
| BtgI | CCRYGG | 2 cut(s) | 111, 386 |
| BtsCI | GGATG | 4 cut(s) | 217, 223, 232, 346 |
| BtsI | GCAGTG | 1 cut(s) | 106 |
| BtsIMutI | CAGTG | 3 cut(s) | 106, 290, 489 |
| Cac8I | GCNNGC | 1 cut(s) | 567 |
| CaiI | CAGNNNCTG | 1 cut(s) | 263 |
| CfoI | GCGC | 3 cut(s) | 99, 235, 505 |
| Cfr10I | RCCGGY | 1 cut(s) | 299 |
| Cfr13I | GGNCC | 6 cut(s) | 108, 119, 145, 266, 297, 317 |
| Csp6I | GTAC | 2 cut(s) | 182, 476 |
| CspAI | ACCGGT | 1 cut(s) | 299 |
| CviAII | CATG | 4 cut(s) | 112, 223, 353, 530 |
| CviQI | GTAC | 2 cut(s) | 182, 476 |
| DdeI | CTNAG | 2 cut(s) | 421, 597 |
| DpnI | GATC | 3 cut(s) | 201, 412, 448 |
| DpnII | GATC | 3 cut(s) | 199, 410, 446 |
| EaeI | YGGCCR | 3 cut(s) | 374, 436, 483 |
| Eco130I | CCWWGG | 1 cut(s) | 111 |
| Eco147I | AGGCCT | 1 cut(s) | 595 |
| Eco24I | GRGCYC | 1 cut(s) | 50 |
| Eco47I | GGWCC | 4 cut(s) | 108, 145, 297, 317 |
| EcoRII | CCWGG | 2 cut(s) | 59, 293 |
| EcoT14I | CCWWGG | 1 cut(s) | 111 |
| EcoT38I | GRGCYC | 1 cut(s) | 50 |
| ErhI | CCWWGG | 1 cut(s) | 111 |
| FaeI | CATG | 4 cut(s) | 115, 226, 356, 533 |
| FaiI | YATR | 5 cut(s) | 113, 224, 354, 531, 647 |
| FaqI | GGGAC | 1 cut(s) | 529 |
| FatI | CATG | 4 cut(s) | 111, 222, 352, 529 |
| FauI | CCCGC | 1 cut(s) | 552 |
| FokI | GGATG | 4 cut(s) | 224, 230, 239, 353 |
| FriOI | GRGCYC | 1 cut(s) | 50 |
| FspBI | CTAG | 1 cut(s) | 153 |
| GlaI | GCGC | 3 cut(s) | 98, 234, 504 |
| GsaI | CCCAGC | 1 cut(s) | 267 |
| GsuI | CTGGAG | 2 cut(s) | 206, 354 |
| HaeIII | GGCC | 7 cut(s) | 121, 268, 376, 438, 485, 569, 595 |
| HapII | CCGG | 2 cut(s) | 50, 300 |
| HhaI | GCGC | 3 cut(s) | 99, 235, 505 |
| Hin1II | CATG | 4 cut(s) | 115, 226, 356, 533 |
| Hin6I | GCGC | 3 cut(s) | 97, 233, 503 |
| HinP1I | GCGC | 3 cut(s) | 97, 233, 503 |
| HinfI | GANTC | 3 cut(s) | 188, 254, 572 |
| HpaII | CCGG | 2 cut(s) | 50, 300 |
| HphI | GGTGA | 1 cut(s) | 43 |
| Hpy166II | GTNNAC | 3 cut(s) | 108, 206, 579 |
| Hpy188III | TCNNGA | 2 cut(s) | 368, 408 |
| Hpy8I | GTNNAC | 3 cut(s) | 108, 206, 579 |
| HpyAV | CCTTC | 3 cut(s) | 66, 161, 598 |
| HpyCH4III | ACNGT | 2 cut(s) | 285, 314 |
| HpyCH4V | TGCA | 2 cut(s) | 206, 529 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 54 |
| HpyF3I | CTNAG | 2 cut(s) | 421, 597 |
| Hsp92II | CATG | 4 cut(s) | 115, 226, 356, 533 |
| HspAI | GCGC | 3 cut(s) | 97, 233, 503 |
| Kzo9I | GATC | 3 cut(s) | 199, 410, 446 |
| MaeI | CTAG | 1 cut(s) | 153 |
| MalI | GATC | 3 cut(s) | 201, 412, 448 |
| MboI | GATC | 3 cut(s) | 199, 410, 446 |
| MboII | GAAGA | 3 cut(s) | 260, 613, 646 |
| MflI | RGATCY | 1 cut(s) | 446 |
| MhlI | GDGCHC | 5 cut(s) | 50, 59, 208, 275, 312 |
| MlsI | TGGCCA | 2 cut(s) | 376, 438 |
| MluCI | AATT | 5 cut(s) | 124, 392, 440, 454, 521 |
| MluNI | TGGCCA | 2 cut(s) | 376, 438 |
| MlyI | GAGTC | 2 cut(s) | 197, 581 |
| MmeI | TCCRAC | 2 cut(s) | 344, 532 |
| MnlI | CCTC | 9 cut(s) | 21, 27, 87, 151, 208, 235, 238, 349, 548 |
| Mox20I | TGGCCA | 2 cut(s) | 376, 438 |
| MscI | TGGCCA | 2 cut(s) | 376, 438 |
| MseI | TTAA | 2 cut(s) | 38, 666 |
| Msp20I | TGGCCA | 2 cut(s) | 376, 438 |
| MspI | CCGG | 2 cut(s) | 50, 300 |
| MspR9I | CCNGG | 3 cut(s) | 50, 61, 295 |
| MvaI | CCWGG | 2 cut(s) | 61, 295 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 54 |
| NciI | CCSGG | 1 cut(s) | 50 |
| NcoI | CCATGG | 1 cut(s) | 111 |
| NdeII | GATC | 3 cut(s) | 199, 410, 446 |
| NlaIII | CATG | 4 cut(s) | 115, 226, 356, 533 |
| NlaIV | GGNNCC | 1 cut(s) | 120 |
| NmeAIII | GCCGAG | 2 cut(s) | 294, 595 |
| PceI | AGGCCT | 1 cut(s) | 595 |
| PfeI | GAWTC | 1 cut(s) | 254 |
| PinAI | ACCGGT | 1 cut(s) | 299 |
| PleI | GAGTC | 2 cut(s) | 196, 580 |
| PpsI | GAGTC | 2 cut(s) | 196, 580 |
| Psp6I | CCWGG | 2 cut(s) | 59, 293 |
| PspFI | CCCAGC | 1 cut(s) | 263 |
| PspGI | CCWGG | 2 cut(s) | 59, 293 |
| PspN4I | GGNNCC | 1 cut(s) | 120 |
| PspPI | GGNCC | 6 cut(s) | 108, 119, 145, 266, 297, 317 |
| PstNI | CAGNNNCTG | 1 cut(s) | 263 |
| PsuI | RGATCY | 1 cut(s) | 446 |
| RsaI | GTAC | 2 cut(s) | 183, 477 |
| RsaNI | GTAC | 2 cut(s) | 182, 476 |
| SaqAI | TTAA | 2 cut(s) | 38, 666 |
| Sau3AI | GATC | 3 cut(s) | 199, 410, 446 |
| Sau96I | GGNCC | 6 cut(s) | 108, 119, 145, 266, 297, 317 |
| SchI | GAGTC | 2 cut(s) | 197, 581 |
| ScrFI | CCNGG | 3 cut(s) | 50, 61, 295 |
| SduI | GDGCHC | 5 cut(s) | 50, 59, 208, 275, 312 |
| SetI | ASST | 9 cut(s) | 38, 62, 77, 172, 296, 360, 427, 552, 609 |
| SinI | GGWCC | 4 cut(s) | 108, 145, 297, 317 |
| Sse9I | AATT | 5 cut(s) | 124, 392, 440, 454, 521 |
| SseBI | AGGCCT | 1 cut(s) | 595 |
| SsiI | CCGC | 1 cut(s) | 559 |
| SspMI | CTAG | 1 cut(s) | 153 |
| StuI | AGGCCT | 1 cut(s) | 595 |
| StyD4I | CCNGG | 3 cut(s) | 48, 59, 293 |
| StyI | CCWWGG | 1 cut(s) | 111 |
| TaaI | ACNGT | 2 cut(s) | 285, 314 |
| TasI | AATT | 5 cut(s) | 124, 392, 440, 454, 521 |
| TfiI | GAWTC | 1 cut(s) | 254 |
| Tru1I | TTAA | 2 cut(s) | 38, 666 |
| Tru9I | TTAA | 2 cut(s) | 38, 666 |
| TscAI | CASTG | 3 cut(s) | 106, 290, 496 |
| TspDTI | ATGAA | 1 cut(s) | 640 |
| TspGWI | ACGGA | 1 cut(s) | 375 |
| TspRI | CASTG | 3 cut(s) | 106, 290, 496 |
| VneI | GTGCAC | 1 cut(s) | 204 |
| VpaK11BI | GGWCC | 4 cut(s) | 108, 145, 297, 317 |
| XapI | RAATTY | 1 cut(s) | 124 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 139, 384 |
| XspI | CTAG | 1 cut(s) | 153 |