ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 198 - 244 | 7e-10 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 979 |
| AatII | GACGTC | 1 cut(s) | 1033 |
| Acc36I | ACCTGC | 1 cut(s) | 979 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 15 |
| AccBSI | CCGCTC | 1 cut(s) | 1506 |
| AccI | GTMKAC | 1 cut(s) | 1235 |
| AccII | CGCG | 2 cut(s) | 181, 965 |
| AccIII | TCCGGA | 1 cut(s) | 874 |
| AciI | CCGC | 7 cut(s) | 164, 181, 703, 733, 791, 1157, 1506 |
| AclWI | GGATC | 1 cut(s) | 464 |
| AcsI | RAATTY | 5 cut(s) | 423, 442, 569, 682, 878 |
| AcuI | CTGAAG | 1 cut(s) | 1091 |
| AcvI | CACGTG | 1 cut(s) | 979 |
| AcyI | GRCGYC | 1 cut(s) | 1030 |
| AdeI | CACNNNGTG | 1 cut(s) | 15 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 15, 543, 1009, 1205, 1342 |
| AflIII | ACRYGT | 1 cut(s) | 963 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1242 |
| AjiI | CACGTC | 1 cut(s) | 176 |
| AjnI | CCWGG | 3 cut(s) | 87, 1426, 1487 |
| AluBI | AGCT | 5 cut(s) | 274, 620, 661, 872, 1559 |
| AluI | AGCT | 5 cut(s) | 274, 620, 661, 872, 1559 |
| Alw21I | GWGCWC | 3 cut(s) | 978, 1102, 1561 |
| Alw26I | GTCTC | 7 cut(s) | 527, 680, 920, 1167, 1180, 1266, 1388 |
| Alw44I | GTGCAC | 1 cut(s) | 1098 |
| AlwI | GGATC | 1 cut(s) | 464 |
| Ama87I | CYCGRG | 2 cut(s) | 1081, 1177 |
| Aor13HI | TCCGGA | 1 cut(s) | 874 |
| AoxI | GGCC | 6 cut(s) | 232, 817, 998, 1319, 1385, 1421 |
| ApaI | GGGCCC | 1 cut(s) | 1389 |
| ApaLI | GTGCAC | 1 cut(s) | 1098 |
| ApoI | RAATTY | 5 cut(s) | 423, 442, 569, 682, 878 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 54, 245 |
| AspA2I | CCTAGG | 1 cut(s) | 1229 |
| AspLEI | GCGC | 1 cut(s) | 181 |
| AsuHPI | GGTGA | 3 cut(s) | 106, 971, 1370 |
| AvaI | CYCGRG | 2 cut(s) | 1081, 1177 |
| AvaII | GGWCC | 7 cut(s) | 85, 410, 776, 935, 1108, 1244, 1583 |
| AvrII | CCTAGG | 1 cut(s) | 1229 |
| BaeGI | GKGCMC | 3 cut(s) | 346, 1102, 1389 |
| BanII | GRGCYC | 3 cut(s) | 1284, 1389, 1561 |
| BbrPI | CACGTG | 1 cut(s) | 979 |
| BbsI | GAAGAC | 3 cut(s) | 140, 891, 1415 |
| Bbv12I | GWGCWC | 3 cut(s) | 978, 1102, 1561 |
| BccI | CCATC | 6 cut(s) | 224, 1180, 1310, 1349, 1573, 1605 |
| BceAI | ACGGC | 1 cut(s) | 210 |
| BciT130I | CCWGG | 3 cut(s) | 89, 1428, 1489 |
| BcoDI | GTCTC | 7 cut(s) | 527, 680, 920, 1167, 1180, 1266, 1388 |
| BfaI | CTAG | 4 cut(s) | 389, 467, 1230, 1539 |
| BfmI | CTRYAG | 1 cut(s) | 611 |
| BfuAI | ACCTGC | 1 cut(s) | 979 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 231, 1429 |
| BisI | GCNGC | 2 cut(s) | 182, 1507 |
| BlnI | CCTAGG | 1 cut(s) | 1229 |
| BlpI | GCTNAGC | 1 cut(s) | 642 |
| BlsI | GCNGC | 2 cut(s) | 183, 1508 |
| Bme1390I | CCNGG | 3 cut(s) | 89, 1428, 1489 |
| Bme18I | GGWCC | 7 cut(s) | 85, 410, 776, 935, 1108, 1244, 1583 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1242 |
| BmeT110I | CYCGRG | 2 cut(s) | 1081, 1177 |
| BmgBI | CACGTC | 1 cut(s) | 176 |
| BmrFI | CCNGG | 3 cut(s) | 89, 1428, 1489 |
| BmrI | ACTGGG | 1 cut(s) | 1294 |
| BmsI | GCATC | 3 cut(s) | 344, 628, 1525 |
| BmuI | ACTGGG | 1 cut(s) | 1294 |
| BpiI | GAAGAC | 3 cut(s) | 140, 891, 1415 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1495, 1527 |
| BpmI | CTGGAG | 2 cut(s) | 1152, 1410 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 642 |
| BpuEI | CTTGAG | 3 cut(s) | 641, 1268, 1333 |
| BsaAI | YACGTR | 1 cut(s) | 979 |
| BsaHI | GRCGYC | 1 cut(s) | 1030 |
| BsaI | GGTCTC | 1 cut(s) | 527 |
| BsaJI | CCNNGG | 9 cut(s) | 324, 359, 814, 1082, 1229, 1322, 1389, 1427, 1488 |
| BsaWI | WCCGGW | 3 cut(s) | 874, 1246, 1585 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 15, 543, 1009, 1205, 1342 |
| Bse118I | RCCGGY | 1 cut(s) | 853 |
| Bse1I | ACTGG | 1 cut(s) | 1300 |
| BseAI | TCCGGA | 1 cut(s) | 874 |
| BseBI | CCWGG | 3 cut(s) | 89, 1428, 1489 |
| BseDI | CCNNGG | 9 cut(s) | 324, 359, 814, 1082, 1229, 1322, 1389, 1427, 1488 |
| BseGI | GGATG | 4 cut(s) | 359, 1191, 1321, 1360 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 15, 543, 1009, 1205, 1342 |
| BseMII | CTCAG | 3 cut(s) | 477, 1178, 1427 |
| BseNI | ACTGG | 1 cut(s) | 1300 |
| BseRI | GAGGAG | 3 cut(s) | 341, 1106, 1561 |
| BseSI | GKGCMC | 3 cut(s) | 346, 1102, 1389 |
| BsgI | GTGCAG | 1 cut(s) | 748 |
| Bsh1236I | CGCG | 2 cut(s) | 181, 965 |
| BshFI | GGCC | 6 cut(s) | 234, 819, 1000, 1321, 1387, 1423 |
| BsiHKAI | GWGCWC | 3 cut(s) | 978, 1102, 1561 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1081, 1177 |
| BsiSI | CCGG | 6 cut(s) | 820, 854, 875, 897, 1247, 1586 |
| BslFI | GGGAC | 3 cut(s) | 423, 948, 1094 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 15, 543, 1009, 1205, 1342 |
| BsmAI | GTCTC | 7 cut(s) | 527, 680, 920, 1167, 1180, 1266, 1388 |
| BsmBI | CGTCTC | 2 cut(s) | 680, 920 |
| BsmFI | GGGAC | 3 cut(s) | 423, 948, 1094 |
| BsnI | GGCC | 6 cut(s) | 234, 819, 1000, 1321, 1387, 1423 |
| Bso31I | GGTCTC | 1 cut(s) | 527 |
| BsoBI | CYCGRG | 2 cut(s) | 1081, 1177 |
| Bsp120I | GGGCCC | 1 cut(s) | 1385 |
| Bsp1286I | GDGCHC | 6 cut(s) | 346, 978, 1102, 1284, 1389, 1561 |
| Bsp13I | TCCGGA | 1 cut(s) | 874 |
| Bsp143I | GATC | 4 cut(s) | 469, 478, 538, 803 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 642 |
| BspACI | CCGC | 7 cut(s) | 164, 181, 703, 733, 791, 1157, 1506 |
| BspANI | GGCC | 6 cut(s) | 234, 819, 1000, 1321, 1387, 1423 |
| BspCNI | CTCAG | 3 cut(s) | 478, 1177, 1426 |
| BspEI | TCCGGA | 1 cut(s) | 874 |
| BspFNI | CGCG | 2 cut(s) | 181, 965 |
| BspMI | ACCTGC | 1 cut(s) | 979 |
| BspPI | GGATC | 1 cut(s) | 464 |
| BspTNI | GGTCTC | 1 cut(s) | 527 |
| BsrBI | CCGCTC | 1 cut(s) | 1506 |
| BsrFI | RCCGGY | 1 cut(s) | 853 |
| BsrI | ACTGG | 1 cut(s) | 1300 |
| BssAI | RCCGGY | 1 cut(s) | 853 |
| BssECI | CCNNGG | 9 cut(s) | 324, 359, 814, 1082, 1229, 1322, 1389, 1427, 1488 |
| BssMI | GATC | 4 cut(s) | 469, 478, 538, 803 |
| BssNI | GRCGYC | 1 cut(s) | 1030 |
| BssT1I | CCWWGG | 3 cut(s) | 359, 814, 1229 |
| Bst2UI | CCWGG | 3 cut(s) | 89, 1428, 1489 |
| Bst4CI | ACNGT | 7 cut(s) | 15, 834, 892, 904, 931, 1277, 1326 |
| Bst6I | CTCTTC | 4 cut(s) | 717, 753, 912, 1158 |
| BstACI | GRCGYC | 1 cut(s) | 1030 |
| BstBAI | YACGTR | 1 cut(s) | 979 |
| BstC8I | GCNNGC | 8 cut(s) | 513, 731, 1050, 1077, 1098, 1128, 1148, 1557 |
| BstDEI | CTNAG | 6 cut(s) | 275, 486, 575, 642, 1164, 1413 |
| BstDSI | CCRYGG | 2 cut(s) | 1322, 1389 |
| BstF5I | GGATG | 4 cut(s) | 359, 1191, 1321, 1360 |
| BstFNI | CGCG | 2 cut(s) | 181, 965 |
| BstHHI | GCGC | 1 cut(s) | 181 |
| BstKTI | GATC | 4 cut(s) | 472, 481, 541, 806 |
| BstMAI | GTCTC | 7 cut(s) | 527, 680, 920, 1167, 1180, 1266, 1388 |
| BstMBI | GATC | 4 cut(s) | 469, 478, 538, 803 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 231, 521, 869, 1058, 1127, 1156, 1429 |
| BstNI | CCWGG | 3 cut(s) | 89, 1428, 1489 |
| BstNSI | RCATGY | 2 cut(s) | 947, 1130 |
| BstSCI | CCNGG | 3 cut(s) | 87, 1426, 1487 |
| BstSFI | CTRYAG | 1 cut(s) | 611 |
| BstSLI | GKGCMC | 3 cut(s) | 346, 1102, 1389 |
| BstUI | CGCG | 2 cut(s) | 181, 965 |
| BstV2I | GAAGAC | 3 cut(s) | 140, 891, 1415 |
| BstX2I | RGATCY | 1 cut(s) | 469 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1307 |
| BstYI | RGATCY | 1 cut(s) | 469 |
| BsuRI | GGCC | 6 cut(s) | 234, 819, 1000, 1321, 1387, 1423 |
| BtgI | CCRYGG | 2 cut(s) | 1322, 1389 |
| BtrI | CACGTC | 1 cut(s) | 176 |
| BtsCI | GGATG | 4 cut(s) | 359, 1191, 1321, 1360 |
| BtsI | GCAGTG | 1 cut(s) | 1555 |
| BtsIMutI | CAGTG | 4 cut(s) | 11, 752, 1282, 1555 |
| BveI | ACCTGC | 1 cut(s) | 979 |
| Cac8I | GCNNGC | 8 cut(s) | 513, 731, 1050, 1077, 1098, 1128, 1148, 1557 |
| CfoI | GCGC | 1 cut(s) | 181 |
| Cfr10I | RCCGGY | 1 cut(s) | 853 |
| CseI | GACGC | 4 cut(s) | 404, 949, 954, 971 |
| CviAII | CATG | 2 cut(s) | 944, 1127 |
| DdeI | CTNAG | 6 cut(s) | 275, 486, 575, 642, 1164, 1413 |
| DpnI | GATC | 4 cut(s) | 471, 480, 540, 805 |
| DpnII | GATC | 4 cut(s) | 469, 478, 538, 803 |
| DraIII | CACNNNGTG | 1 cut(s) | 15 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1242 |
| Eam1104I | CTCTTC | 4 cut(s) | 717, 753, 912, 1158 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1242 |
| EarI | CTCTTC | 4 cut(s) | 717, 753, 912, 1158 |
| EciI | GGCGGA | 2 cut(s) | 748, 806 |
| Ecl136II | GAGCTC | 1 cut(s) | 1559 |
| Eco130I | CCWWGG | 3 cut(s) | 359, 814, 1229 |
| Eco24I | GRGCYC | 3 cut(s) | 1284, 1389, 1561 |
| Eco31I | GGTCTC | 1 cut(s) | 527 |
| Eco47I | GGWCC | 7 cut(s) | 85, 410, 776, 935, 1108, 1244, 1583 |
| Eco53kI | GAGCTC | 1 cut(s) | 1559 |
| Eco57I | CTGAAG | 1 cut(s) | 1091 |
| Eco72I | CACGTG | 1 cut(s) | 979 |
| Eco88I | CYCGRG | 2 cut(s) | 1081, 1177 |
| EcoICRI | GAGCTC | 1 cut(s) | 1559 |
| EcoO109I | RGGNCCY | 5 cut(s) | 85, 410, 999, 1108, 1385 |
| EcoRII | CCWGG | 3 cut(s) | 87, 1426, 1487 |
| EcoT14I | CCWWGG | 3 cut(s) | 359, 814, 1229 |
| EcoT38I | GRGCYC | 3 cut(s) | 1284, 1389, 1561 |
| ErhI | CCWWGG | 3 cut(s) | 359, 814, 1229 |
| Esp3I | CGTCTC | 2 cut(s) | 680, 920 |
| FaeI | CATG | 2 cut(s) | 947, 1130 |
| FaiI | YATR | 9 cut(s) | 462, 528, 603, 649, 669, 945, 1089, 1128, 1241 |
| FaqI | GGGAC | 3 cut(s) | 423, 948, 1094 |
| FatI | CATG | 2 cut(s) | 943, 1126 |
| FauI | CCCGC | 1 cut(s) | 157 |
| FblI | GTMKAC | 1 cut(s) | 1235 |
| Fnu4HI | GCNGC | 2 cut(s) | 182, 1507 |
| FokI | GGATG | 4 cut(s) | 366, 1198, 1328, 1367 |
| FriOI | GRGCYC | 3 cut(s) | 1284, 1389, 1561 |
| Fsp4HI | GCNGC | 2 cut(s) | 182, 1507 |
| FspBI | CTAG | 4 cut(s) | 389, 467, 1230, 1539 |
| GlaI | GCGC | 1 cut(s) | 180 |
| GluI | GCNGC | 2 cut(s) | 182, 1507 |
| GsuI | CTGGAG | 2 cut(s) | 1152, 1410 |
| HaeIII | GGCC | 6 cut(s) | 234, 819, 1000, 1321, 1387, 1423 |
| HapII | CCGG | 6 cut(s) | 820, 854, 875, 897, 1247, 1586 |
| HgaI | GACGC | 4 cut(s) | 404, 949, 954, 971 |
| HhaI | GCGC | 1 cut(s) | 181 |
| Hin1I | GRCGYC | 1 cut(s) | 1030 |
| Hin1II | CATG | 2 cut(s) | 947, 1130 |
| Hin6I | GCGC | 1 cut(s) | 179 |
| HinP1I | GCGC | 1 cut(s) | 179 |
| HincII | GTYRAC | 2 cut(s) | 1236, 1498 |
| HindII | GTYRAC | 2 cut(s) | 1236, 1498 |
| HindIII | AAGCTT | 1 cut(s) | 272 |
| HinfI | GANTC | 6 cut(s) | 279, 500, 579, 1217, 1346, 1411 |
| HpaI | GTTAAC | 1 cut(s) | 1498 |
| HpaII | CCGG | 6 cut(s) | 820, 854, 875, 897, 1247, 1586 |
| HphI | GGTGA | 3 cut(s) | 106, 971, 1370 |
| Hpy166II | GTNNAC | 5 cut(s) | 454, 1100, 1236, 1403, 1498 |
| Hpy188I | TCNGA | 7 cut(s) | 124, 284, 325, 564, 1167, 1416, 1515 |
| Hpy188III | TCNNGA | 8 cut(s) | 259, 473, 593, 784, 875, 1010, 1179, 1252 |
| Hpy8I | GTNNAC | 5 cut(s) | 454, 1100, 1236, 1403, 1498 |
| Hpy99I | CGWCG | 5 cut(s) | 896, 943, 970, 1035, 1057 |
| HpyAV | CCTTC | 8 cut(s) | 545, 781, 1162, 1249, 1348, 1449, 1510, 1517 |
| HpyCH4III | ACNGT | 7 cut(s) | 15, 834, 892, 904, 931, 1277, 1326 |
| HpyCH4IV | ACGT | 6 cut(s) | 61, 175, 673, 978, 1030, 1142 |
| HpyCH4V | TGCA | 3 cut(s) | 212, 729, 1100 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 231, 521, 869, 1058, 1127, 1156, 1429 |
| HpyF3I | CTNAG | 6 cut(s) | 275, 486, 575, 642, 1164, 1413 |
| HpySE526I | ACGT | 6 cut(s) | 61, 175, 673, 978, 1030, 1142 |
| Hsp92I | GRCGYC | 1 cut(s) | 1030 |
| Hsp92II | CATG | 2 cut(s) | 947, 1130 |
| HspAI | GCGC | 1 cut(s) | 179 |
| KflI | GGGWCCC | 2 cut(s) | 410, 1108 |
| Kpn2I | TCCGGA | 1 cut(s) | 874 |
| KspAI | GTTAAC | 1 cut(s) | 1498 |
| Kzo9I | GATC | 4 cut(s) | 469, 478, 538, 803 |
| LmnI | GCTCC | 5 cut(s) | 877, 973, 1093, 1564, 1574 |
| LweI | GCATC | 3 cut(s) | 344, 628, 1525 |
| MaeI | CTAG | 4 cut(s) | 389, 467, 1230, 1539 |
| MaeII | ACGT | 6 cut(s) | 61, 175, 673, 978, 1030, 1142 |
| MaeIII | GTNAC | 2 cut(s) | 959, 1210 |
| MalI | GATC | 4 cut(s) | 471, 480, 540, 805 |
| MbiI | CCGCTC | 1 cut(s) | 1506 |
| MboI | GATC | 4 cut(s) | 469, 478, 538, 803 |
| MflI | RGATCY | 1 cut(s) | 469 |
| MhlI | GDGCHC | 6 cut(s) | 346, 978, 1102, 1284, 1389, 1561 |
| MluI | ACGCGT | 1 cut(s) | 963 |
| MlyI | GAGTC | 4 cut(s) | 288, 1226, 1340, 1405 |
| MmeI | TCCRAC | 2 cut(s) | 175, 262 |
| MroI | TCCGGA | 1 cut(s) | 874 |
| MroXI | GAANNNNTTC | 2 cut(s) | 54, 245 |
| MseI | TTAA | 4 cut(s) | 431, 1328, 1434, 1497 |
| MslI | CAYNNNNRTG | 2 cut(s) | 459, 717 |
| MspI | CCGG | 6 cut(s) | 820, 854, 875, 897, 1247, 1586 |
| MspR9I | CCNGG | 3 cut(s) | 89, 1428, 1489 |
| MvaI | CCWGG | 3 cut(s) | 89, 1428, 1489 |
| MvnI | CGCG | 2 cut(s) | 181, 965 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 231, 521, 869, 1058, 1127, 1156, 1429 |
| NdeII | GATC | 4 cut(s) | 469, 478, 538, 803 |
| NlaIII | CATG | 2 cut(s) | 947, 1130 |
| NmuCI | GTSAC | 1 cut(s) | 959 |
| NspI | RCATGY | 2 cut(s) | 947, 1130 |
| PaeI | GCATGC | 1 cut(s) | 1130 |
| PaqCI | CACCTGC | 1 cut(s) | 979 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 670, 935, 1386 |
| PdmI | GAANNNNTTC | 2 cut(s) | 54, 245 |
| PfeI | GAWTC | 2 cut(s) | 500, 579 |
| PflFI | GACNNNGTC | 1 cut(s) | 890 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 15 |
| PkrI | GCNGC | 2 cut(s) | 183, 1508 |
| PleI | GAGTC | 4 cut(s) | 287, 1225, 1340, 1405 |
| PmaCI | CACGTG | 1 cut(s) | 979 |
| PmlI | CACGTG | 1 cut(s) | 979 |
| PpsI | GAGTC | 4 cut(s) | 287, 1225, 1340, 1405 |
| Ppu21I | YACGTR | 1 cut(s) | 979 |
| PpuMI | RGGWCCY | 3 cut(s) | 85, 410, 1108 |
| Psp124BI | GAGCTC | 1 cut(s) | 1561 |
| Psp5II | RGGWCCY | 3 cut(s) | 85, 410, 1108 |
| Psp6I | CCWGG | 3 cut(s) | 87, 1426, 1487 |
| PspCI | CACGTG | 1 cut(s) | 979 |
| PspGI | CCWGG | 3 cut(s) | 87, 1426, 1487 |
| PspOMI | GGGCCC | 1 cut(s) | 1385 |
| PspPPI | RGGWCCY | 3 cut(s) | 85, 410, 1108 |
| PsuI | RGATCY | 1 cut(s) | 469 |
| PsyI | GACNNNGTC | 1 cut(s) | 890 |
| RseI | CAYNNNNRTG | 2 cut(s) | 459, 717 |
| SacI | GAGCTC | 1 cut(s) | 1561 |
| SalI | GTCGAC | 1 cut(s) | 1234 |
| SaqAI | TTAA | 4 cut(s) | 431, 1328, 1434, 1497 |
| SatI | GCNGC | 2 cut(s) | 182, 1507 |
| Sau3AI | GATC | 4 cut(s) | 469, 478, 538, 803 |
| SchI | GAGTC | 4 cut(s) | 288, 1226, 1340, 1405 |
| ScrFI | CCNGG | 3 cut(s) | 89, 1428, 1489 |
| SduI | GDGCHC | 6 cut(s) | 346, 978, 1102, 1284, 1389, 1561 |
| SfaNI | GCATC | 3 cut(s) | 344, 628, 1525 |
| SfcI | CTRYAG | 1 cut(s) | 611 |
| SinI | GGWCC | 7 cut(s) | 85, 410, 776, 935, 1108, 1244, 1583 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 459, 717 |
| SmlI | CTYRAG | 3 cut(s) | 656, 1283, 1348 |
| SmoI | CTYRAG | 3 cut(s) | 656, 1283, 1348 |
| SphI | GCATGC | 1 cut(s) | 1130 |
| SsiI | CCGC | 7 cut(s) | 164, 181, 703, 733, 791, 1157, 1506 |
| SspMI | CTAG | 4 cut(s) | 389, 467, 1230, 1539 |
| SstI | GAGCTC | 1 cut(s) | 1561 |
| StyD4I | CCNGG | 3 cut(s) | 87, 1426, 1487 |
| StyI | CCWWGG | 3 cut(s) | 359, 814, 1229 |
| TaaI | ACNGT | 7 cut(s) | 15, 834, 892, 904, 931, 1277, 1326 |
| TaiI | ACGT | 6 cut(s) | 64, 178, 676, 981, 1033, 1145 |
| TaqI | TCGA | 4 cut(s) | 708, 1235, 1544, 1592 |
| TaqII | GACCGA | 2 cut(s) | 551, 952 |
| TauI | GCSGC | 2 cut(s) | 184, 1509 |
| TfiI | GAWTC | 2 cut(s) | 500, 579 |
| Tru1I | TTAA | 4 cut(s) | 431, 1328, 1434, 1497 |
| Tru9I | TTAA | 4 cut(s) | 431, 1328, 1434, 1497 |
| TscAI | CASTG | 4 cut(s) | 18, 759, 1282, 1555 |
| TseFI | GTSAC | 1 cut(s) | 959 |
| Tsp45I | GTSAC | 1 cut(s) | 959 |
| TspDTI | ATGAA | 4 cut(s) | 279, 684, 735, 863 |
| TspGWI | ACGGA | 3 cut(s) | 152, 572, 1564 |
| TspRI | CASTG | 4 cut(s) | 18, 759, 1282, 1555 |
| Tth111I | GACNNNGTC | 1 cut(s) | 890 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 15 |
| VneI | GTGCAC | 1 cut(s) | 1098 |
| VpaK11BI | GGWCC | 7 cut(s) | 85, 410, 776, 935, 1108, 1244, 1583 |
| XapI | RAATTY | 5 cut(s) | 423, 442, 569, 682, 878 |
| XceI | RCATGY | 2 cut(s) | 947, 1130 |
| XmaJI | CCTAGG | 1 cut(s) | 1229 |
| XmiI | GTMKAC | 1 cut(s) | 1235 |
| XmnI | GAANNNNTTC | 2 cut(s) | 54, 245 |
| XspI | CTAG | 4 cut(s) | 389, 467, 1230, 1539 |
| ZraI | GACGTC | 1 cut(s) | 1031 |