ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 314, 1500 |
| AccB1I | GGYRCC | 2 cut(s) | 1052, 1099 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1442 |
| AccII | CGCG | 1 cut(s) | 1656 |
| AccIII | TCCGGA | 3 cut(s) | 136, 553, 1684 |
| AciI | CCGC | 6 cut(s) | 625, 992, 1075, 1094, 1386, 1475 |
| AclWI | GGATC | 8 cut(s) | 55, 545, 564, 583, 819, 1236, 1319, 1351 |
| AcsI | RAATTY | 4 cut(s) | 167, 1263, 1574, 1639 |
| AcuI | CTGAAG | 2 cut(s) | 1068, 1682 |
| AcyI | GRCGYC | 2 cut(s) | 1053, 1100 |
| AfaI | GTAC | 1 cut(s) | 658 |
| AfeI | AGCGCT | 1 cut(s) | 240 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 510, 560, 947, 1279, 1374, 1442 |
| AgsI | TTSAA | 9 cut(s) | 379, 442, 586, 898, 1291, 1459, 1483, 1549, 1671 |
| AhlI | ACTAGT | 1 cut(s) | 17 |
| AjiI | CACGTC | 1 cut(s) | 1496 |
| AjnI | CCWGG | 2 cut(s) | 646, 1055 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1541, 1573 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1283, 1315 |
| AluBI | AGCT | 4 cut(s) | 97, 287, 386, 748 |
| AluI | AGCT | 4 cut(s) | 97, 287, 386, 748 |
| Alw21I | GWGCWC | 1 cut(s) | 931 |
| Alw26I | GTCTC | 4 cut(s) | 494, 1076, 1236, 1338 |
| Alw44I | GTGCAC | 1 cut(s) | 927 |
| AlwI | GGATC | 8 cut(s) | 55, 545, 564, 583, 819, 1236, 1319, 1351 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 820 |
| Aor13HI | TCCGGA | 3 cut(s) | 136, 553, 1684 |
| Aor51HI | AGCGCT | 1 cut(s) | 240 |
| AoxI | GGCC | 5 cut(s) | 1028, 1418, 1512, 1521, 1538 |
| ApaLI | GTGCAC | 1 cut(s) | 927 |
| ApoI | RAATTY | 4 cut(s) | 167, 1263, 1574, 1639 |
| AspLEI | GCGC | 5 cut(s) | 241, 293, 1055, 1102, 1658 |
| AspS9I | GGNCC | 6 cut(s) | 143, 1028, 1418, 1472, 1522, 1682 |
| AsuC2I | CCSGG | 3 cut(s) | 311, 505, 1516 |
| AsuHPI | GGTGA | 1 cut(s) | 1016 |
| AvaII | GGWCC | 3 cut(s) | 143, 1472, 1682 |
| AxyI | CCTNAGG | 1 cut(s) | 1422 |
| BaeGI | GKGCMC | 1 cut(s) | 931 |
| BanI | GGYRCC | 2 cut(s) | 1052, 1099 |
| BauI | CACGAG | 1 cut(s) | 1700 |
| BbsI | GAAGAC | 2 cut(s) | 310, 1607 |
| Bbv12I | GWGCWC | 1 cut(s) | 931 |
| BceAI | ACGGC | 4 cut(s) | 601, 638, 1087, 1107 |
| BciT130I | CCWGG | 2 cut(s) | 648, 1057 |
| BcnI | CCSGG | 3 cut(s) | 311, 505, 1516 |
| BcoDI | GTCTC | 4 cut(s) | 494, 1076, 1236, 1338 |
| BcuI | ACTAGT | 1 cut(s) | 17 |
| BfaI | CTAG | 5 cut(s) | 18, 98, 276, 510, 1542 |
| BfmI | CTRYAG | 1 cut(s) | 1347 |
| BfoI | RGCGCY | 3 cut(s) | 242, 1056, 1103 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 622, 1520 |
| Bme1390I | CCNGG | 5 cut(s) | 311, 505, 648, 1057, 1516 |
| Bme18I | GGWCC | 3 cut(s) | 143, 1472, 1682 |
| BmgBI | CACGTC | 1 cut(s) | 1496 |
| BmgT120I | GGNCC | 6 cut(s) | 143, 1028, 1418, 1472, 1522, 1682 |
| BmiI | GGNNCC | 5 cut(s) | 1054, 1101, 1524, 1563, 1683 |
| BmrFI | CCNGG | 5 cut(s) | 311, 505, 648, 1057, 1516 |
| BmsI | GCATC | 3 cut(s) | 708, 912, 1175 |
| BpiI | GAAGAC | 2 cut(s) | 310, 1607 |
| BpuEI | CTTGAG | 2 cut(s) | 317, 413 |
| BpuMI | CCSGG | 3 cut(s) | 311, 505, 1516 |
| BsaBI | GATNNNNATC | 2 cut(s) | 345, 555 |
| BsaHI | GRCGYC | 2 cut(s) | 1053, 1100 |
| BsaI | GGTCTC | 1 cut(s) | 494 |
| BsaJI | CCNNGG | 5 cut(s) | 368, 1000, 1031, 1056, 1436 |
| BsaWI | WCCGGW | 3 cut(s) | 136, 553, 1684 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 59, 89, 839, 869, 1088, 1118 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 510, 560, 947, 1279, 1374, 1442 |
| Bse1I | ACTGG | 2 cut(s) | 1245, 1417 |
| Bse21I | CCTNAGG | 1 cut(s) | 1422 |
| Bse8I | GATNNNNATC | 2 cut(s) | 345, 555 |
| BseAI | TCCGGA | 3 cut(s) | 136, 553, 1684 |
| BseBI | CCWGG | 2 cut(s) | 648, 1057 |
| BseDI | CCNNGG | 5 cut(s) | 368, 1000, 1031, 1056, 1436 |
| BseGI | GGATG | 8 cut(s) | 34, 145, 695, 723, 1017, 1117, 1135, 1189 |
| BseJI | GATNNNNATC | 2 cut(s) | 345, 555 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 510, 560, 947, 1279, 1374, 1442 |
| BseMII | CTCAG | 3 cut(s) | 65, 1247, 1413 |
| BseNI | ACTGG | 2 cut(s) | 1245, 1417 |
| BseRI | GAGGAG | 7 cut(s) | 83, 86, 992, 995, 998, 1241, 1295 |
| BseSI | GKGCMC | 1 cut(s) | 931 |
| BsgI | GTGCAG | 1 cut(s) | 819 |
| Bsh1236I | CGCG | 1 cut(s) | 1656 |
| Bsh1285I | CGRYCG | 1 cut(s) | 532 |
| BshFI | GGCC | 5 cut(s) | 1030, 1420, 1514, 1523, 1540 |
| BshNI | GGYRCC | 2 cut(s) | 1052, 1099 |
| BsiEI | CGRYCG | 1 cut(s) | 532 |
| BsiHKAI | GWGCWC | 1 cut(s) | 931 |
| BsiSI | CCGG | 7 cut(s) | 137, 310, 504, 554, 948, 1515, 1685 |
| BslFI | GGGAC | 5 cut(s) | 520, 1256, 1285, 1604, 1665 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 510, 560, 947, 1279, 1374, 1442 |
| BsmAI | GTCTC | 4 cut(s) | 494, 1076, 1236, 1338 |
| BsmBI | CGTCTC | 1 cut(s) | 1076 |
| BsmFI | GGGAC | 5 cut(s) | 520, 1256, 1285, 1604, 1665 |
| BsnI | GGCC | 5 cut(s) | 1030, 1420, 1514, 1523, 1540 |
| Bso31I | GGTCTC | 1 cut(s) | 494 |
| Bsp1286I | GDGCHC | 1 cut(s) | 931 |
| Bsp13I | TCCGGA | 3 cut(s) | 136, 553, 1684 |
| BspACI | CCGC | 6 cut(s) | 625, 992, 1075, 1094, 1386, 1475 |
| BspANI | GGCC | 5 cut(s) | 1030, 1420, 1514, 1523, 1540 |
| BspCNI | CTCAG | 3 cut(s) | 64, 1246, 1414 |
| BspEI | TCCGGA | 3 cut(s) | 136, 553, 1684 |
| BspFNI | CGCG | 1 cut(s) | 1656 |
| BspLI | GGNNCC | 5 cut(s) | 1054, 1101, 1524, 1563, 1683 |
| BspPI | GGATC | 8 cut(s) | 55, 545, 564, 583, 819, 1236, 1319, 1351 |
| BspT107I | GGYRCC | 2 cut(s) | 1052, 1099 |
| BspTNI | GGTCTC | 1 cut(s) | 494 |
| BsrI | ACTGG | 2 cut(s) | 1245, 1417 |
| BssECI | CCNNGG | 5 cut(s) | 368, 1000, 1031, 1056, 1436 |
| BssNI | GRCGYC | 2 cut(s) | 1053, 1100 |
| BssSI | CACGAG | 1 cut(s) | 1700 |
| BssT1I | CCWWGG | 1 cut(s) | 1000 |
| Bst2BI | CACGAG | 1 cut(s) | 1700 |
| Bst2UI | CCWGG | 2 cut(s) | 648, 1057 |
| Bst4CI | ACNGT | 8 cut(s) | 438, 563, 894, 1025, 1087, 1351, 1606, 1675 |
| Bst6I | CTCTTC | 2 cut(s) | 108, 492 |
| BstACI | GRCGYC | 2 cut(s) | 1053, 1100 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1172 |
| BstC8I | GCNNGC | 3 cut(s) | 289, 927, 1521 |
| BstDEI | CTNAG | 4 cut(s) | 51, 1233, 1422, 1535 |
| BstDSI | CCRYGG | 2 cut(s) | 368, 1436 |
| BstF5I | GGATG | 8 cut(s) | 34, 145, 695, 723, 1017, 1117, 1135, 1189 |
| BstFNI | CGCG | 1 cut(s) | 1656 |
| BstH2I | RGCGCY | 3 cut(s) | 242, 1056, 1103 |
| BstHHI | GCGC | 5 cut(s) | 241, 293, 1055, 1102, 1658 |
| BstMAI | GTCTC | 4 cut(s) | 494, 1076, 1236, 1338 |
| BstMCI | CGRYCG | 1 cut(s) | 532 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 392, 401, 622, 1052, 1061, 1172, 1520 |
| BstNI | CCWGG | 2 cut(s) | 648, 1057 |
| BstNSI | RCATGY | 1 cut(s) | 1469 |
| BstSCI | CCNGG | 5 cut(s) | 309, 503, 646, 1055, 1514 |
| BstSFI | CTRYAG | 1 cut(s) | 1347 |
| BstSLI | GKGCMC | 1 cut(s) | 931 |
| BstUI | CGCG | 1 cut(s) | 1656 |
| BstV2I | GAAGAC | 2 cut(s) | 310, 1607 |
| BstX2I | RGATCY | 2 cut(s) | 47, 1343 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 153 |
| BstYI | RGATCY | 2 cut(s) | 47, 1343 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1422 |
| BsuRI | GGCC | 5 cut(s) | 1030, 1420, 1514, 1523, 1540 |
| BtgI | CCRYGG | 2 cut(s) | 368, 1436 |
| BtrI | CACGTC | 1 cut(s) | 1496 |
| BtsCI | GGATG | 8 cut(s) | 34, 145, 695, 723, 1017, 1117, 1135, 1189 |
| BtsIMutI | CAGTG | 1 cut(s) | 821 |
| Cac8I | GCNNGC | 3 cut(s) | 289, 927, 1521 |
| CaiI | CAGNNNCTG | 1 cut(s) | 820 |
| CfoI | GCGC | 5 cut(s) | 241, 293, 1055, 1102, 1658 |
| Cfr13I | GGNCC | 6 cut(s) | 143, 1028, 1418, 1472, 1522, 1682 |
| CseI | GACGC | 4 cut(s) | 1149, 1211, 1258, 1662 |
| Csp6I | GTAC | 1 cut(s) | 657 |
| CviAII | CATG | 7 cut(s) | 490, 685, 728, 952, 1316, 1369, 1466 |
| CviQI | GTAC | 1 cut(s) | 657 |
| DdeI | CTNAG | 4 cut(s) | 51, 1233, 1422, 1535 |
| DinI | GGCGCC | 2 cut(s) | 1054, 1101 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 314, 1500 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 314, 1500 |
| Eam1104I | CTCTTC | 2 cut(s) | 108, 492 |
| EarI | CTCTTC | 2 cut(s) | 108, 492 |
| EciI | GGCGGA | 4 cut(s) | 1007, 1090, 1109, 1401 |
| Eco130I | CCWWGG | 1 cut(s) | 1000 |
| Eco147I | AGGCCT | 1 cut(s) | 1540 |
| Eco31I | GGTCTC | 1 cut(s) | 494 |
| Eco47I | GGWCC | 3 cut(s) | 143, 1472, 1682 |
| Eco47III | AGCGCT | 1 cut(s) | 240 |
| Eco57I | CTGAAG | 2 cut(s) | 1068, 1682 |
| Eco81I | CCTNAGG | 1 cut(s) | 1422 |
| EcoRII | CCWGG | 2 cut(s) | 646, 1055 |
| EcoT14I | CCWWGG | 1 cut(s) | 1000 |
| EgeI | GGCGCC | 2 cut(s) | 1054, 1101 |
| EheI | GGCGCC | 2 cut(s) | 1054, 1101 |
| ErhI | CCWWGG | 1 cut(s) | 1000 |
| Esp3I | CGTCTC | 1 cut(s) | 1076 |
| FaeI | CATG | 7 cut(s) | 493, 688, 731, 955, 1319, 1372, 1469 |
| FaqI | GGGAC | 5 cut(s) | 520, 1256, 1285, 1604, 1665 |
| FatI | CATG | 7 cut(s) | 489, 684, 727, 951, 1315, 1368, 1465 |
| FauI | CCCGC | 1 cut(s) | 618 |
| FokI | GGATG | 8 cut(s) | 41, 152, 682, 730, 1024, 1124, 1142, 1196 |
| FspBI | CTAG | 5 cut(s) | 18, 98, 276, 510, 1542 |
| GlaI | GCGC | 5 cut(s) | 240, 292, 1054, 1101, 1657 |
| HaeII | RGCGCY | 3 cut(s) | 242, 1056, 1103 |
| HaeIII | GGCC | 5 cut(s) | 1030, 1420, 1514, 1523, 1540 |
| HapII | CCGG | 7 cut(s) | 137, 310, 504, 554, 948, 1515, 1685 |
| HgaI | GACGC | 4 cut(s) | 1149, 1211, 1258, 1662 |
| HhaI | GCGC | 5 cut(s) | 241, 293, 1055, 1102, 1658 |
| Hin1I | GRCGYC | 2 cut(s) | 1053, 1100 |
| Hin1II | CATG | 7 cut(s) | 493, 688, 731, 955, 1319, 1372, 1469 |
| Hin6I | GCGC | 5 cut(s) | 239, 291, 1053, 1100, 1656 |
| HinP1I | GCGC | 5 cut(s) | 239, 291, 1053, 1100, 1656 |
| HincII | GTYRAC | 1 cut(s) | 15 |
| HindII | GTYRAC | 1 cut(s) | 15 |
| HindIII | AAGCTT | 1 cut(s) | 384 |
| HinfI | GANTC | 7 cut(s) | 215, 247, 346, 731, 835, 1229, 1645 |
| HpaII | CCGG | 7 cut(s) | 137, 310, 504, 554, 948, 1515, 1685 |
| HphI | GGTGA | 1 cut(s) | 1016 |
| Hpy166II | GTNNAC | 4 cut(s) | 15, 929, 1021, 1201 |
| Hpy8I | GTNNAC | 4 cut(s) | 15, 929, 1021, 1201 |
| Hpy99I | CGWCG | 1 cut(s) | 1165 |
| HpyCH4III | ACNGT | 8 cut(s) | 438, 563, 894, 1025, 1087, 1351, 1606, 1675 |
| HpyCH4IV | ACGT | 1 cut(s) | 1495 |
| HpyCH4V | TGCA | 7 cut(s) | 60, 404, 800, 929, 1372, 1380, 1465 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 392, 401, 622, 1052, 1061, 1172, 1520 |
| HpyF3I | CTNAG | 4 cut(s) | 51, 1233, 1422, 1535 |
| HpySE526I | ACGT | 1 cut(s) | 1495 |
| Hsp92I | GRCGYC | 2 cut(s) | 1053, 1100 |
| Hsp92II | CATG | 7 cut(s) | 493, 688, 731, 955, 1319, 1372, 1469 |
| HspAI | GCGC | 5 cut(s) | 239, 291, 1053, 1100, 1656 |
| KasI | GGCGCC | 2 cut(s) | 1052, 1099 |
| Kpn2I | TCCGGA | 3 cut(s) | 136, 553, 1684 |
| LmnI | GCTCC | 2 cut(s) | 772, 1213 |
| LweI | GCATC | 3 cut(s) | 708, 912, 1175 |
| MaeI | CTAG | 5 cut(s) | 18, 98, 276, 510, 1542 |
| MaeII | ACGT | 1 cut(s) | 1495 |
| MaeIII | GTNAC | 6 cut(s) | 280, 305, 618, 690, 1087, 1506 |
| MboII | GAAGA | 7 cut(s) | 125, 125, 310, 509, 598, 1561, 1612 |
| MfeI | CAATTG | 1 cut(s) | 1170 |
| MflI | RGATCY | 2 cut(s) | 47, 1343 |
| MhlI | GDGCHC | 1 cut(s) | 931 |
| Mly113I | GGCGCC | 2 cut(s) | 1053, 1100 |
| MlyI | GAGTC | 4 cut(s) | 224, 241, 1238, 1654 |
| MmeI | TCCRAC | 5 cut(s) | 25, 837, 1017, 1333, 1450 |
| MroI | TCCGGA | 3 cut(s) | 136, 553, 1684 |
| MseI | TTAA | 2 cut(s) | 824, 1295 |
| MspI | CCGG | 7 cut(s) | 137, 310, 504, 554, 948, 1515, 1685 |
| MspR9I | CCNGG | 5 cut(s) | 311, 505, 648, 1057, 1516 |
| MunI | CAATTG | 1 cut(s) | 1170 |
| MvaI | CCWGG | 2 cut(s) | 648, 1057 |
| MvnI | CGCG | 1 cut(s) | 1656 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 392, 401, 622, 1052, 1061, 1172, 1520 |
| NarI | GGCGCC | 2 cut(s) | 1053, 1100 |
| NciI | CCSGG | 3 cut(s) | 311, 505, 1516 |
| NlaIII | CATG | 7 cut(s) | 493, 688, 731, 955, 1319, 1372, 1469 |
| NlaIV | GGNNCC | 5 cut(s) | 1054, 1101, 1524, 1563, 1683 |
| NmeAIII | GCCGAG | 1 cut(s) | 1056 |
| NmuCI | GTSAC | 2 cut(s) | 305, 1506 |
| NspI | RCATGY | 1 cut(s) | 1469 |
| PceI | AGGCCT | 1 cut(s) | 1540 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 614 |
| PfeI | GAWTC | 3 cut(s) | 346, 731, 835 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1442 |
| PfoI | TCCNGGA | 1 cut(s) | 646 |
| PleI | GAGTC | 4 cut(s) | 223, 241, 1237, 1653 |
| PluTI | GGCGCC | 2 cut(s) | 1056, 1103 |
| PpsI | GAGTC | 4 cut(s) | 223, 241, 1237, 1653 |
| Psp6I | CCWGG | 2 cut(s) | 646, 1055 |
| PspGI | CCWGG | 2 cut(s) | 646, 1055 |
| PspN4I | GGNNCC | 5 cut(s) | 1054, 1101, 1524, 1563, 1683 |
| PspPI | GGNCC | 6 cut(s) | 143, 1028, 1418, 1472, 1522, 1682 |
| PstNI | CAGNNNCTG | 1 cut(s) | 820 |
| PsuI | RGATCY | 2 cut(s) | 47, 1343 |
| RsaI | GTAC | 1 cut(s) | 658 |
| RsaNI | GTAC | 1 cut(s) | 657 |
| SaqAI | TTAA | 2 cut(s) | 824, 1295 |
| Sau96I | GGNCC | 6 cut(s) | 143, 1028, 1418, 1472, 1522, 1682 |
| SchI | GAGTC | 4 cut(s) | 224, 241, 1238, 1654 |
| ScrFI | CCNGG | 5 cut(s) | 311, 505, 648, 1057, 1516 |
| SduI | GDGCHC | 1 cut(s) | 931 |
| SfaNI | GCATC | 3 cut(s) | 708, 912, 1175 |
| SfcI | CTRYAG | 1 cut(s) | 1347 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1520 |
| SfoI | GGCGCC | 2 cut(s) | 1054, 1101 |
| SinI | GGWCC | 3 cut(s) | 143, 1472, 1682 |
| SmlI | CTYRAG | 2 cut(s) | 296, 428 |
| SmoI | CTYRAG | 2 cut(s) | 296, 428 |
| SpeI | ACTAGT | 1 cut(s) | 17 |
| SseBI | AGGCCT | 1 cut(s) | 1540 |
| SsiI | CCGC | 6 cut(s) | 625, 992, 1075, 1094, 1386, 1475 |
| SspDI | GGCGCC | 2 cut(s) | 1052, 1099 |
| SspMI | CTAG | 5 cut(s) | 18, 98, 276, 510, 1542 |
| StuI | AGGCCT | 1 cut(s) | 1540 |
| StyD4I | CCNGG | 5 cut(s) | 309, 503, 646, 1055, 1514 |
| StyI | CCWWGG | 1 cut(s) | 1000 |
| TaaI | ACNGT | 8 cut(s) | 438, 563, 894, 1025, 1087, 1351, 1606, 1675 |
| TaiI | ACGT | 1 cut(s) | 1498 |
| TaqI | TCGA | 3 cut(s) | 329, 783, 1240 |
| TaqII | GACCGA | 1 cut(s) | 518 |
| TfiI | GAWTC | 3 cut(s) | 346, 731, 835 |
| Tru1I | TTAA | 2 cut(s) | 824, 1295 |
| Tru9I | TTAA | 2 cut(s) | 824, 1295 |
| TscAI | CASTG | 1 cut(s) | 821 |
| TseFI | GTSAC | 2 cut(s) | 305, 1506 |
| Tsp45I | GTSAC | 2 cut(s) | 305, 1506 |
| TspDTI | ATGAA | 2 cut(s) | 701, 1200 |
| TspGWI | ACGGA | 4 cut(s) | 122, 623, 1094, 1453 |
| TspRI | CASTG | 1 cut(s) | 821 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1442 |
| VneI | GTGCAC | 1 cut(s) | 927 |
| VpaK11BI | GGWCC | 3 cut(s) | 143, 1472, 1682 |
| XapI | RAATTY | 4 cut(s) | 167, 1263, 1574, 1639 |
| XceI | RCATGY | 1 cut(s) | 1469 |
| XspI | CTAG | 5 cut(s) | 18, 98, 276, 510, 1542 |