Rw7G034460

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000022
Physical Location & Seq
Forward (+)
51128026 .. 51133700
5675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G034460.1

Sequence Viewer

Length: 2754 bp
ATGAGTACGTTCTGGGCACTAGTAAACGAAGTATCCAAAGGAGTTGTGGTTTGTTGGGAGAAGATGGATGAGGTGGTGAATGGGCTGTCTGCCAAACTAGTAATTTCAGAGGCGGAGGACCTTAAGGTGATTAAGATCGACGATGTGGAGGATCTGTCTCTCAAGAAGTTCTGGCTTGTGGGCAGACTTCTGACTTCGAAACCTTTCAACAAGGACTCACTTCAGAGTACGATGAAGCGAATATGGCATATTAAAGGTGACGTTTCAATTTTTGAATGGGAGAACTCTGGCAGGTTTGTCTTTTCCTTTCAGTCTGATGCGGACAGGAGGAAAATCCTAAGGGGCAGCCCATGGACGTTTGATAACACCTTATTGTTGCTCTCGGCTATGGATGGGAAATCTGATCCCCTGAAAGTTCCATTGAAGATTCAGAATTTTTGGATTCGGGTCAGGGGTCTTGCACCGGAACTTCTGACCCAAAAAATGGGAAGGCGAGTTGGGAACATTTTAGGAACACTAGTGGGTGTTAATCCTGGGGTGAATGGTGACTGCACTGGGAGTTTTCTCCGAATTCGAGTGGGTTTGGATGTTTCGGTGCCTCTAAGAAGATGGATTAGGATCCAACTTGAGAATTCGAGCGAGGAAGTCAAACTCTTACTGGAGTATGAAGACCTTCCTCACTTTTGTTTCTTTTGCGGGCGTTTGGACCATGTAAGCGCTGGGTGTGAACTGAAAAAGGCCGGGAAGATTCAGGAAGTGCAGTACGGCAGATGGAAGACCCTTTCCAAAAATGTGTTTAACATTGACCCTCAGGGTCAGTTACAAGGTGTCAGATTTGGCCTTCACGGTCCTAAGCCTGGCTGGAGTATGCAGAAACCTTCTTCGTCACTATCTGGGACGATCCGACCAAGAGAGGAGGTTCAAGGAGGCGGTAGCGGTCTGGAATGTGAAATGGTGGAGAATGGTGAACTGACAGAGGATCACTTTGAGGCACCAGAGGCAAAGCGGCGGTGGACAGCGGTCCCTACGAACGCGAATCCGGTAGACGTGTCTGATAATATGGAGGCGAGTTTGGAAGATCCTCATATCCTAAATCGACACTCAAGATCAGACATCCTCTTAGGTCCGACTCTTGAAGTTTTGAAGATTGGCGGGAACTCAGGAGGCGAGAGATTAGGAGCTGTTCCAAACTCGAAGGCGGGGGTTGGCATTGAGTCTGCTGAGCTGGCAAGCCCTCCAGTAAAACAACAAGAATTTGGGCCCATTTTGAAGACAGTTGGGGTCAATAGGAGTCACACAGTGGAGCAGGACTCGCAGGTCGTGGAGCAAAGTGGGGATGTGGTGATGTATAAGAGAACTGGGAAGAAAAAGGGAGAGAAGGAAGAAGCGTTGGGAAAGCAGGTAGCGTCAAAGGGAGAGAATGGAGGTCGACCTGGGTTCTTCATGGGAGGTAGTGGTGGGAAAGAAGGTAAGAGCGGGGGGCTTGCGTTTGGTTGGTCAAATAAGGTGAATGTCAAGGTGATGGGATCTTCCCCAGCCCACATTGATATTTTGTTGATCTCCACTTCGAGGCCAATTCGGCTTATTGGTTTCTATGGTAATCCAACTACCTCCTTGCGTACCTTTTCCTGGGAGTTAATGAGACGACTTTGTAACTCAATCAGTGGCCCTTGTTTCATTTTCGGTGATTTCAATGAATTACTGAATTCTGGAGAAAAGATCAGGGGGGCCATAAGACCAGAAGCCCAAATGAAACGTTTTCAAGAGGCAGTGAGCGACTGTGGTTTGGTTGAAATCCCAATTTCTGGTCCAGTGATTACTTGGTCTAATGGGAATACTCTAGAAAGATTGGATCGAGGCTTCCTTAATGCGCAAGGGTTGACTGTGTGGCCTAACCTACATGAGTTCCATGTTGACGCCGGAGCTTCAGACCATCTGGCTTTACTGTTCAATACTGACGGTGATAGGTTGGCTACCATTTCTTCCAGGAGACGGAGATTCCAATTCGAACCTTTATGGGCTAAAGAAGCATCTTGTGAGGAGGTGATCCTCGATAATTGGACAGCGATGAGGAGGGGCAGGCCTATAATGGACAGTTTACTTGGGATTGGGAAGAATGCTTGCAAACACGGTGAAGCTAGTGATGTGGGTGAACAGGTTATGTTTAAAGCCAAAGATTGGCTATGCAGTTTCAGGGATGCTAATGTCGTTAGTAAGGAGTTGCCTCCGAGCCAAGGCAGGAGCTTGGAAACCAACCCGACCCCTAGATGGAGTCCGCCTAATCGACAATGCCTGAAGTTGAACGTCGGCGCAGCATGCGACCCCAAAAATCGTAAAGCAGGTATAGGAGCGGTGGTGCCGAACTCGGAAGGTACTCTGGTTTGTGCTATGGTGCTTCCTATTGCGGGGACACCCTCTGTTTTCGCTACAGAGGCCTTAGCCGTCCTTCATGGGCTCAGATTGTGTAAACAGGAAGGCTTTCAAAGGGTTATGGTTGAAAGTAATGCAATTAATGTGATTCATGCGCTGAATAAGGAGGGAGCAGACTCTAGTATGGAAGGCCAGATTTTTGAGGAAGCTAGGAAGCTGAGAACGGAGATTGAGGCTGTCTCCTGGGAGAAGGTACATCGCAATTGTAATAGAGTAGCCCATGCATTAGCTAGAGAGGCACTTTCATTTGTTAGCATTAAGTTCTGGAAAGAGAGTGGGCCCCCTTGGCTCCAAACTCTTCTCCTAGATGACTTGAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

917

Amino Acids

101.25

Weight (kDa)

8.42

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 56 - 136 3.9e-12 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 195 - 243 3.3e-08 Zinc knuckle
RVT_3 PF13456 769 - 890 3.8e-20 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1316
Acc16I TGCGCA 1 cut(s) 1872
Acc36I ACCTGC 4 cut(s) 282, 1306, 1390, 2330
AccB1I GGYRCC 3 cut(s) 595, 991, 2356
AccB7I CCANNNNNTGG 3 cut(s) 484, 1805, 2178
AccBSI CCGCTC 2 cut(s) 1476, 2351
AccI GTMKAC 2 cut(s) 1044, 1429
AccII CGCG 1 cut(s) 1034
AclI AACGTT 1 cut(s) 1756
AcsI RAATTY 5 cut(s) 433, 570, 631, 1253, 1705
AcuI CTGAAG 3 cut(s) 206, 1911, 2315
AcyI GRCGYC 1 cut(s) 1917
AdeI CACNNNGTG 1 cut(s) 1300
AfaI GTAC 6 cut(s) 7, 229, 764, 1621, 2374, 2625
AfeI AGCGCT 1 cut(s) 718
AflII CTTAAG 1 cut(s) 122
AflIII ACRYGT 1 cut(s) 1047
AhlI ACTAGT 3 cut(s) 19, 97, 517
AjiI CACGTC 1 cut(s) 1048
AjnI CCWGG 6 cut(s) 532, 856, 1432, 1628, 1985, 2612
AluBI AGCT 8 cut(s) 1181, 1225, 1925, 2138, 2244, 2579, 2587, 2660
AluI AGCT 8 cut(s) 1181, 1225, 1925, 2138, 2244, 2579, 2587, 2660
Alw26I GTCTC 4 cut(s) 162, 1636, 1984, 2614
Aor51HI AGCGCT 1 cut(s) 718
ApaI GGGCCC 2 cut(s) 1263, 2712
ApeKI GCWGC 2 cut(s) 345, 2312
ApoI RAATTY 5 cut(s) 433, 570, 631, 1253, 1705
AseI ATTAAT 1 cut(s) 2511
Asp700I GAANNNNTTC 3 cut(s) 203, 672, 2478
AspLEI GCGC 4 cut(s) 719, 1873, 2312, 2527
AsuC2I CCSGG 1 cut(s) 742
AsuII TTCGAA 2 cut(s) 197, 2007
AvaII GGWCC 6 cut(s) 118, 706, 848, 1021, 1124, 1808
AxyI CCTNAGG 2 cut(s) 338, 810
BaeGI GKGCMC 3 cut(s) 19, 1263, 2712
BaeI ACNNNNGTAYC 2 cut(s) 2364, 2397
BamHI GGATCC 1 cut(s) 618
BanI GGYRCC 3 cut(s) 595, 991, 2356
BanII GRGCYC 3 cut(s) 1263, 2457, 2712
BbsI GAAGAC 3 cut(s) 675, 782, 1277
BbvI GCAGC 2 cut(s) 357, 2324
BccI CCATC 7 cut(s) 58, 386, 603, 765, 1516, 1941, 2262
BceAI ACGGC 2 cut(s) 781, 2426
BciT130I CCWGG 6 cut(s) 534, 858, 1434, 1630, 1987, 2614
BciVI GTATCC 1 cut(s) 43
BcnI CCSGG 1 cut(s) 742
BcoDI GTCTC 4 cut(s) 162, 1636, 1984, 2614
BcuI ACTAGT 3 cut(s) 19, 97, 517
BfmI CTRYAG 1 cut(s) 2427
BfoI RGCGCY 1 cut(s) 720
BfrI CTTAAG 1 cut(s) 122
BfuAI ACCTGC 4 cut(s) 282, 1306, 1390, 2330
BfuI GTATCC 1 cut(s) 43
BglI GCCNNNNNGGC 2 cut(s) 1579, 2716
BisI GCNGC 3 cut(s) 346, 1007, 2313
BlpI GCTNAGC 1 cut(s) 1221
BlsI GCNGC 3 cut(s) 347, 1008, 2314
Bme1390I CCNGG 7 cut(s) 534, 742, 858, 1434, 1630, 1987, 2614
Bme18I GGWCC 6 cut(s) 118, 706, 848, 1021, 1124, 1808
BmgBI CACGTC 1 cut(s) 1048
BmrFI CCNGG 7 cut(s) 534, 742, 858, 1434, 1630, 1987, 2614
BmrI ACTGGG 2 cut(s) 564, 1368
BmsI GCATC 3 cut(s) 307, 2039, 2188
BmuI ACTGGG 2 cut(s) 564, 1368
BoxI GACNNNNGTC 1 cut(s) 1019
BpiI GAAGAC 3 cut(s) 675, 782, 1277
BplI GAGNNNNNCTC 4 cut(s) 1295, 1327, 2594, 2626
BpmI CTGGAG 4 cut(s) 680, 883, 1221, 1731
Bpu10I CCTNAGC 2 cut(s) 852, 2437
Bpu1102I GCTNAGC 1 cut(s) 1221
Bpu14I TTCGAA 2 cut(s) 197, 2007
BpuEI CTTGAG 3 cut(s) 146, 647, 1087
BpuMI CCSGG 1 cut(s) 742
BsaBI GATNNNNATC 2 cut(s) 134, 617
BsaHI GRCGYC 1 cut(s) 1917
BsaJI CCNNGG 7 cut(s) 350, 533, 1433, 1629, 2233, 2613, 2714
BsaWI WCCGGW 2 cut(s) 463, 1039
BsaXI ACNNNNNCTCC 6 cut(s) 33, 63, 140, 170, 2340, 2370
Bse1I ACTGG 5 cut(s) 559, 663, 1238, 1363, 1811
Bse21I CCTNAGG 2 cut(s) 338, 810
Bse8I GATNNNNATC 2 cut(s) 134, 617
BseBI CCWGG 6 cut(s) 534, 858, 1434, 1630, 1987, 2614
BseDI CCNNGG 7 cut(s) 350, 533, 1433, 1629, 2233, 2613, 2714
BseGI GGATG 6 cut(s) 73, 397, 592, 1113, 1342, 2203
BseJI GATNNNNATC 2 cut(s) 134, 617
BseMII CTCAG 5 cut(s) 824, 1173, 1212, 2470, 2579
BseNI ACTGG 5 cut(s) 559, 663, 1238, 1363, 1811
BseRI GAGGAG 3 cut(s) 929, 2054, 2086
BseSI GKGCMC 3 cut(s) 19, 1263, 2712
BseXI GCAGC 2 cut(s) 357, 2324
BseYI CCCAGC 2 cut(s) 719, 1534
BsgI GTGCAG 2 cut(s) 535, 779
Bsh1236I CGCG 1 cut(s) 1034
BshNI GGYRCC 3 cut(s) 595, 991, 2356
BsiSI CCGG 4 cut(s) 464, 741, 1040, 1920
BslFI GGGAC 3 cut(s) 910, 1007, 2422
BsmAI GTCTC 4 cut(s) 162, 1636, 1984, 2614
BsmBI CGTCTC 2 cut(s) 1636, 1984
BsmFI GGGAC 3 cut(s) 910, 1007, 2422
BsmI GAATGC 1 cut(s) 2122
Bsp119I TTCGAA 2 cut(s) 197, 2007
Bsp120I GGGCCC 2 cut(s) 1259, 2708
Bsp1286I GDGCHC 4 cut(s) 19, 1263, 2457, 2712
Bsp1720I GCTNAGC 1 cut(s) 1221
Bsp19I CCATGG 1 cut(s) 350
BspCNI CTCAG 5 cut(s) 823, 1172, 1213, 2469, 2580
BspFNI CGCG 1 cut(s) 1034
BspMI ACCTGC 4 cut(s) 282, 1306, 1390, 2330
BspT104I TTCGAA 2 cut(s) 197, 2007
BspT107I GGYRCC 3 cut(s) 595, 991, 2356
BspTI CTTAAG 1 cut(s) 122
BsrBI CCGCTC 2 cut(s) 1476, 2351
BsrI ACTGG 5 cut(s) 559, 663, 1238, 1363, 1811
BssECI CCNNGG 7 cut(s) 350, 533, 1433, 1629, 2233, 2613, 2714
BssNI GRCGYC 1 cut(s) 1917
BssT1I CCWWGG 3 cut(s) 350, 2233, 2714
Bst2UI CCWGG 6 cut(s) 534, 858, 1434, 1630, 1987, 2614
Bst4CI ACNGT 9 cut(s) 848, 1276, 1300, 1781, 1885, 1947, 1961, 2096, 2132
Bst6I CTCTTC 1 cut(s) 2733
BstACI GRCGYC 1 cut(s) 1917
BstAFI CTTAAG 1 cut(s) 122
BstBI TTCGAA 2 cut(s) 197, 2007
BstC8I GCNNGC 7 cut(s) 698, 1227, 1231, 1485, 2081, 2122, 2317
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 6 cut(s) 73, 397, 592, 1113, 1342, 2203
BstFNI CGCG 1 cut(s) 1034
BstH2I RGCGCY 1 cut(s) 720
BstHHI GCGC 4 cut(s) 719, 1873, 2312, 2527
BstMAI GTCTC 4 cut(s) 162, 1636, 1984, 2614
BstNI CCWGG 6 cut(s) 534, 858, 1434, 1630, 1987, 2614
BstNSI RCATGY 1 cut(s) 2319
BstPAI GACNNNNGTC 1 cut(s) 1019
BstSCI CCNGG 7 cut(s) 532, 740, 856, 1432, 1628, 1985, 2612
BstSFI CTRYAG 1 cut(s) 2427
BstSLI GKGCMC 3 cut(s) 19, 1263, 2712
BstUI CGCG 1 cut(s) 1034
BstV1I GCAGC 2 cut(s) 357, 2324
BstV2I GAAGAC 3 cut(s) 675, 782, 1277
BstX2I RGATCY 4 cut(s) 151, 618, 1078, 1526
BstYI RGATCY 4 cut(s) 151, 618, 1078, 1526
Bsu36I CCTNAGG 2 cut(s) 338, 810
BsuI GTATCC 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 350
BtgZI GCGATG 2 cut(s) 2081, 2612
BtrI CACGTC 1 cut(s) 1048
BtsCI GGATG 6 cut(s) 73, 397, 592, 1113, 1342, 2203
BtsI GCAGTG 1 cut(s) 1776
BtsIMutI CAGTG 5 cut(s) 552, 1305, 1669, 1776, 1818
BveI ACCTGC 4 cut(s) 282, 1306, 1390, 2330
Cac8I GCNNGC 7 cut(s) 698, 1227, 1231, 1485, 2081, 2122, 2317
CfoI GCGC 4 cut(s) 719, 1873, 2312, 2527
CseI GACGC 2 cut(s) 1395, 1925
Csp6I GTAC 6 cut(s) 6, 228, 763, 1620, 2373, 2624
CviAII CATG 9 cut(s) 351, 710, 1444, 1901, 1910, 2316, 2450, 2522, 2651
CviQI GTAC 6 cut(s) 6, 228, 763, 1620, 2373, 2624
DraI TTTAAA 1 cut(s) 2167
DraIII CACNNNGTG 1 cut(s) 1300
DrdI GACNNNNNNGTC 1 cut(s) 1316
DseDI GACNNNNNNGTC 1 cut(s) 1316
Eam1104I CTCTTC 1 cut(s) 2733
EarI CTCTTC 1 cut(s) 2733
EciI GGCGGA 2 cut(s) 128, 2265
Eco130I CCWWGG 3 cut(s) 350, 2233, 2714
Eco147I AGGCCT 2 cut(s) 2083, 2435
Eco24I GRGCYC 3 cut(s) 1263, 2457, 2712
Eco47I GGWCC 6 cut(s) 118, 706, 848, 1021, 1124, 1808
Eco47III AGCGCT 1 cut(s) 718
Eco57I CTGAAG 3 cut(s) 206, 1911, 2315
Eco81I CCTNAGG 2 cut(s) 338, 810
EcoO109I RGGNCCY 2 cut(s) 118, 2709
EcoRI GAATTC 3 cut(s) 570, 631, 1705
EcoRII CCWGG 6 cut(s) 532, 856, 1432, 1628, 1985, 2612
EcoT14I CCWWGG 3 cut(s) 350, 2233, 2714
EcoT22I ATGCAT 1 cut(s) 2656
EcoT38I GRGCYC 3 cut(s) 1263, 2457, 2712
ErhI CCWWGG 3 cut(s) 350, 2233, 2714
Esp3I CGTCTC 2 cut(s) 1636, 1984
FaeI CATG 9 cut(s) 354, 713, 1447, 1904, 1913, 2319, 2453, 2525, 2654
FaqI GGGAC 3 cut(s) 910, 1007, 2422
FatI CATG 9 cut(s) 350, 709, 1443, 1900, 1909, 2315, 2449, 2521, 2650
FauI CCCGC 5 cut(s) 689, 1145, 1192, 1469, 2398
FblI GTMKAC 2 cut(s) 1044, 1429
Fnu4HI GCNGC 3 cut(s) 346, 1007, 2313
FokI GGATG 6 cut(s) 80, 404, 599, 1100, 1349, 2210
FriOI GRGCYC 3 cut(s) 1263, 2457, 2712
Fsp4HI GCNGC 3 cut(s) 346, 1007, 2313
FspI TGCGCA 1 cut(s) 1872
GlaI GCGC 4 cut(s) 718, 1872, 2311, 2526
GluI GCNGC 3 cut(s) 346, 1007, 2313
GsaI CCCAGC 2 cut(s) 723, 1538
GsuI CTGGAG 4 cut(s) 680, 883, 1221, 1731
HaeII RGCGCY 1 cut(s) 720
HapII CCGG 4 cut(s) 464, 741, 1040, 1920
HgaI GACGC 2 cut(s) 1395, 1925
HhaI GCGC 4 cut(s) 719, 1873, 2312, 2527
Hin1I GRCGYC 1 cut(s) 1917
Hin1II CATG 9 cut(s) 354, 713, 1447, 1904, 1913, 2319, 2453, 2525, 2654
Hin6I GCGC 4 cut(s) 717, 1871, 2310, 2525
HinP1I GCGC 4 cut(s) 717, 1871, 2310, 2525
HincII GTYRAC 3 cut(s) 1430, 1881, 1915
HindII GTYRAC 3 cut(s) 1430, 1881, 1915
HpaII CCGG 4 cut(s) 464, 741, 1040, 1920
Hpy99I CGWCG 2 cut(s) 143, 2309
HpyCH4III ACNGT 9 cut(s) 848, 1276, 1300, 1781, 1885, 1947, 1961, 2096, 2132
HpyCH4IV ACGT 6 cut(s) 8, 261, 356, 1047, 1756, 2304
HpyCH4V TGCA 8 cut(s) 461, 552, 760, 871, 2124, 2187, 2507, 2654
HpySE526I ACGT 6 cut(s) 8, 261, 356, 1047, 1756, 2304
Hsp92I GRCGYC 1 cut(s) 1917
Hsp92II CATG 9 cut(s) 354, 713, 1447, 1904, 1913, 2319, 2453, 2525, 2654
HspAI GCGC 4 cut(s) 717, 1871, 2310, 2525
LmnI GCTCC 8 cut(s) 1178, 1303, 1324, 1922, 2241, 2348, 2540, 2724
Lsp1109I GCAGC 2 cut(s) 357, 2324
LweI GCATC 3 cut(s) 307, 2039, 2188
MaeII ACGT 6 cut(s) 8, 261, 356, 1047, 1756, 2304
MaeIII GTNAC 6 cut(s) 257, 545, 819, 885, 1292, 1652
MbiI CCGCTC 2 cut(s) 1476, 2351
MfeI CAATTG 2 cut(s) 2632, 2749
MflI RGATCY 4 cut(s) 151, 618, 1078, 1526
MhlI GDGCHC 4 cut(s) 19, 1263, 2457, 2712
MlyI GAGTC 7 cut(s) 209, 1123, 1223, 1300, 1304, 2281, 2540
MmeI TCCRAC 4 cut(s) 646, 928, 1151, 1628
Mph1103I ATGCAT 1 cut(s) 2656
MroXI GAANNNNTTC 3 cut(s) 203, 672, 2478
MspA1I CMGCKG 1 cut(s) 1019
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 4 cut(s) 464, 741, 1040, 1920
MspR9I CCNGG 7 cut(s) 534, 742, 858, 1434, 1630, 1987, 2614
MunI CAATTG 2 cut(s) 2632, 2749
Mva1269I GAATGC 1 cut(s) 2122
MvaI CCWGG 6 cut(s) 534, 858, 1434, 1630, 1987, 2614
MvnI CGCG 1 cut(s) 1034
NciI CCSGG 1 cut(s) 742
NcoI CCATGG 1 cut(s) 350
NlaIII CATG 9 cut(s) 354, 713, 1447, 1904, 1913, 2319, 2453, 2525, 2654
NmeAIII GCCGAG 1 cut(s) 362
NmuCI GTSAC 4 cut(s) 257, 545, 885, 1292
NsbI TGCGCA 1 cut(s) 1872
NsiI ATGCAT 1 cut(s) 2656
NspI RCATGY 1 cut(s) 2319
NspV TTCGAA 2 cut(s) 197, 2007
PaeI GCATGC 1 cut(s) 2319
PceI AGGCCT 2 cut(s) 2083, 2435
PctI GAATGC 1 cut(s) 2122
PdmI GAANNNNTTC 3 cut(s) 203, 672, 2478
PfeI GAWTC 6 cut(s) 427, 442, 748, 1036, 1998, 2518
PflMI CCANNNNNTGG 3 cut(s) 484, 1805, 2178
PfoI TCCNGGA 1 cut(s) 1985
PkrI GCNGC 3 cut(s) 347, 1008, 2314
PleI GAGTC 7 cut(s) 209, 1123, 1222, 1299, 1304, 2280, 2540
PpsI GAGTC 7 cut(s) 209, 1123, 1222, 1299, 1304, 2280, 2540
PpuMI RGGWCCY 1 cut(s) 118
PshAI GACNNNNGTC 1 cut(s) 1019
PshBI ATTAAT 1 cut(s) 2511
Psp1406I AACGTT 1 cut(s) 1756
Psp5II RGGWCCY 1 cut(s) 118
Psp6I CCWGG 6 cut(s) 532, 856, 1432, 1628, 1985, 2612
PspFI CCCAGC 2 cut(s) 719, 1534
PspGI CCWGG 6 cut(s) 532, 856, 1432, 1628, 1985, 2612
PspOMI GGGCCC 2 cut(s) 1259, 2708
PspPPI RGGWCCY 1 cut(s) 118
PsuI RGATCY 4 cut(s) 151, 618, 1078, 1526
RsaI GTAC 6 cut(s) 7, 229, 764, 1621, 2374, 2625
RsaNI GTAC 6 cut(s) 6, 228, 763, 1620, 2373, 2624
SalI GTCGAC 1 cut(s) 1428
SatI GCNGC 3 cut(s) 346, 1007, 2313
SchI GAGTC 7 cut(s) 209, 1123, 1223, 1300, 1304, 2281, 2540
ScrFI CCNGG 7 cut(s) 534, 742, 858, 1434, 1630, 1987, 2614
SduI GDGCHC 4 cut(s) 19, 1263, 2457, 2712
SfaNI GCATC 3 cut(s) 307, 2039, 2188
SfcI CTRYAG 1 cut(s) 2427
SfuI TTCGAA 2 cut(s) 197, 2007
SinI GGWCC 6 cut(s) 118, 706, 848, 1021, 1124, 1808
SmlI CTYRAG 4 cut(s) 122, 161, 626, 1102
SmoI CTYRAG 4 cut(s) 122, 161, 626, 1102
SpeI ACTAGT 3 cut(s) 19, 97, 517
SphI GCATGC 1 cut(s) 2319
SseBI AGGCCT 2 cut(s) 2083, 2435
StuI AGGCCT 2 cut(s) 2083, 2435
StyD4I CCNGG 7 cut(s) 532, 740, 856, 1432, 1628, 1985, 2612
StyI CCWWGG 3 cut(s) 350, 2233, 2714
TaaI ACNGT 9 cut(s) 848, 1276, 1300, 1781, 1885, 1947, 1961, 2096, 2132
TaiI ACGT 6 cut(s) 11, 264, 359, 1050, 1759, 2307
TauI GCSGC 1 cut(s) 1009
TfiI GAWTC 6 cut(s) 427, 442, 748, 1036, 1998, 2518
TscAI CASTG 5 cut(s) 559, 1305, 1669, 1776, 1818
TseFI GTSAC 4 cut(s) 257, 545, 885, 1292
TseI GCWGC 2 cut(s) 345, 2312
Tsp45I GTSAC 4 cut(s) 257, 545, 885, 1292
TspDTI ATGAA 9 cut(s) 248, 681, 1432, 1666, 1710, 1766, 2438, 2510, 2664
TspGWI ACGGA 2 cut(s) 2008, 2609
TspRI CASTG 5 cut(s) 559, 1305, 1669, 1776, 1818
Van91I CCANNNNNTGG 3 cut(s) 484, 1805, 2178
Vha464I CTTAAG 1 cut(s) 122
VpaK11BI GGWCC 6 cut(s) 118, 706, 848, 1021, 1124, 1808
VspI ATTAAT 1 cut(s) 2511
XapI RAATTY 5 cut(s) 433, 570, 631, 1253, 1705
XbaI TCTAGA 1 cut(s) 1840
XceI RCATGY 1 cut(s) 2319
XcmI CCANNNNNNNNNTGG 3 cut(s) 43, 716, 1818
XmiI GTMKAC 2 cut(s) 1044, 1429
XmnI GAANNNNTTC 3 cut(s) 203, 672, 2478
Zsp2I ATGCAT 1 cut(s) 2656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.