Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 492 |
| AclI | AACGTT | 1 cut(s) | 1100 |
| AclWI | GGATC | 5 cut(s) | 74, 335, 461, 560, 573 |
| AcoI | YGGCCR | 1 cut(s) | 754 |
| AcuI | CTGAAG | 1 cut(s) | 906 |
| AcvI | CACGTG | 1 cut(s) | 1187 |
| AfaI | GTAC | 3 cut(s) | 66, 843, 1290 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 329, 793, 824, 1118, 1310 |
| AflIII | ACRYGT | 2 cut(s) | 1070, 1184 |
| AgsI | TTSAA | 7 cut(s) | 152, 726, 917, 967, 1013, 1054, 1098 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 1331 |
| AluBI | AGCT | 7 cut(s) | 498, 520, 583, 659, 884, 905, 1164 |
| AluI | AGCT | 7 cut(s) | 498, 520, 583, 659, 884, 905, 1164 |
| AlwI | GGATC | 5 cut(s) | 74, 335, 461, 560, 573 |
| AoxI | GGCC | 2 cut(s) | 754, 1005 |
| ApeKI | GCWGC | 2 cut(s) | 495, 958 |
| AseI | ATTAAT | 1 cut(s) | 1227 |
| AspS9I | GGNCC | 6 cut(s) | 319, 532, 646, 1005, 1105, 1323 |
| AsuC2I | CCSGG | 2 cut(s) | 345, 788 |
| AsuHPI | GGTGA | 6 cut(s) | 29, 196, 359, 397, 1094, 1142 |
| AvaII | GGWCC | 5 cut(s) | 319, 532, 646, 1105, 1323 |
| BalI | TGGCCA | 1 cut(s) | 756 |
| BamHI | GGATCC | 1 cut(s) | 565 |
| BbrPI | CACGTG | 1 cut(s) | 1187 |
| BbvCI | CCTCAGC | 1 cut(s) | 521 |
| BbvI | GCAGC | 2 cut(s) | 507, 970 |
| BccI | CCATC | 4 cut(s) | 479, 565, 705, 1127 |
| BceAI | ACGGC | 1 cut(s) | 245 |
| BciVI | GTATCC | 1 cut(s) | 568 |
| BcnI | CCSGG | 2 cut(s) | 345, 788 |
| BfaI | CTAG | 1 cut(s) | 999 |
| BfuI | GTATCC | 1 cut(s) | 568 |
| BisI | GCNGC | 3 cut(s) | 493, 496, 959 |
| BlpI | GCTNAGC | 1 cut(s) | 99 |
| BlsI | GCNGC | 3 cut(s) | 494, 497, 960 |
| Bme1390I | CCNGG | 2 cut(s) | 345, 788 |
| Bme18I | GGWCC | 5 cut(s) | 319, 532, 646, 1105, 1323 |
| BmgT120I | GGNCC | 6 cut(s) | 319, 532, 646, 1005, 1105, 1323 |
| BmiI | GGNNCC | 6 cut(s) | 321, 534, 567, 816, 1006, 1107 |
| BmrFI | CCNGG | 2 cut(s) | 345, 788 |
| BmsI | GCATC | 2 cut(s) | 174, 546 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1153, 1185 |
| Bpu10I | CCTNAGC | 1 cut(s) | 521 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 99 |
| BpuEI | CTTGAG | 1 cut(s) | 351 |
| BpuMI | CCSGG | 2 cut(s) | 345, 788 |
| BsaAI | YACGTR | 2 cut(s) | 269, 1187 |
| BsaJI | CCNNGG | 2 cut(s) | 287, 787 |
| BsaWI | WCCGGW | 1 cut(s) | 1320 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 1331 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 329, 793, 824, 1118, 1310 |
| Bse1I | ACTGG | 5 cut(s) | 321, 648, 681, 757, 1112 |
| Bse3DI | GCAATG | 1 cut(s) | 1349 |
| BseDI | CCNNGG | 2 cut(s) | 287, 787 |
| BseGI | GGATG | 1 cut(s) | 561 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 329, 793, 824, 1118, 1310 |
| BseMI | GCAATG | 1 cut(s) | 1349 |
| BseMII | CTCAG | 5 cut(s) | 90, 243, 512, 517, 575 |
| BseNI | ACTGG | 5 cut(s) | 321, 648, 681, 757, 1112 |
| BseRI | GAGGAG | 1 cut(s) | 869 |
| BseXI | GCAGC | 2 cut(s) | 507, 970 |
| BshFI | GGCC | 2 cut(s) | 756, 1007 |
| BsiSI | CCGG | 3 cut(s) | 344, 787, 1321 |
| BslFI | GGGAC | 4 cut(s) | 305, 338, 1091, 1150 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 329, 793, 824, 1118, 1310 |
| BsmFI | GGGAC | 4 cut(s) | 305, 338, 1091, 1150 |
| BsnI | GGCC | 2 cut(s) | 756, 1007 |
| Bsp143I | GATC | 5 cut(s) | 79, 263, 340, 466, 565 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 99 |
| Bsp19I | CCATGG | 1 cut(s) | 287 |
| BspACI | CCGC | 1 cut(s) | 492 |
| BspANI | GGCC | 2 cut(s) | 756, 1007 |
| BspCNI | CTCAG | 5 cut(s) | 91, 244, 513, 516, 576 |
| BspHI | TCATGA | 2 cut(s) | 459, 1355 |
| BspLI | GGNNCC | 6 cut(s) | 321, 534, 567, 816, 1006, 1107 |
| BspPI | GGATC | 5 cut(s) | 74, 335, 461, 560, 573 |
| BsrDI | GCAATG | 1 cut(s) | 1349 |
| BsrI | ACTGG | 5 cut(s) | 321, 648, 681, 757, 1112 |
| BssECI | CCNNGG | 2 cut(s) | 287, 787 |
| BssMI | GATC | 5 cut(s) | 79, 263, 340, 466, 565 |
| BssT1I | CCWWGG | 1 cut(s) | 287 |
| Bst4CI | ACNGT | 3 cut(s) | 73, 133, 771 |
| Bst6I | CTCTTC | 4 cut(s) | 1055, 1187, 1196, 1261 |
| BstBAI | YACGTR | 2 cut(s) | 269, 1187 |
| BstDEI | CTNAG | 7 cut(s) | 99, 252, 503, 521, 539, 584, 1021 |
| BstDSI | CCRYGG | 1 cut(s) | 287 |
| BstF5I | GGATG | 1 cut(s) | 561 |
| BstKTI | GATC | 5 cut(s) | 82, 266, 343, 469, 568 |
| BstMBI | GATC | 5 cut(s) | 79, 263, 340, 466, 565 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 109, 1275 |
| BstNSI | RCATGY | 1 cut(s) | 1074 |
| BstSCI | CCNGG | 2 cut(s) | 343, 786 |
| BstV1I | GCAGC | 2 cut(s) | 507, 970 |
| BstX2I | RGATCY | 1 cut(s) | 565 |
| BstYI | RGATCY | 1 cut(s) | 565 |
| BsuI | GTATCC | 1 cut(s) | 568 |
| BsuRI | GGCC | 2 cut(s) | 756, 1007 |
| BtgI | CCRYGG | 1 cut(s) | 287 |
| BtsCI | GGATG | 1 cut(s) | 561 |
| BtsIMutI | CAGTG | 2 cut(s) | 314, 1119 |
| CciI | TCATGA | 2 cut(s) | 459, 1355 |
| Cfr13I | GGNCC | 6 cut(s) | 319, 532, 646, 1005, 1105, 1323 |
| CseI | GACGC | 1 cut(s) | 171 |
| Csp6I | GTAC | 3 cut(s) | 65, 842, 1289 |
| CviAII | CATG | 7 cut(s) | 288, 460, 650, 949, 1071, 1336, 1356 |
| CviQI | GTAC | 3 cut(s) | 65, 842, 1289 |
| DdeI | CTNAG | 7 cut(s) | 99, 252, 503, 521, 539, 584, 1021 |
| DpnI | GATC | 5 cut(s) | 81, 265, 342, 468, 567 |
| DpnII | GATC | 5 cut(s) | 79, 263, 340, 466, 565 |
| EaeI | YGGCCR | 1 cut(s) | 754 |
| Eam1104I | CTCTTC | 4 cut(s) | 1055, 1187, 1196, 1261 |
| EarI | CTCTTC | 4 cut(s) | 1055, 1187, 1196, 1261 |
| Eco130I | CCWWGG | 1 cut(s) | 287 |
| Eco47I | GGWCC | 5 cut(s) | 319, 532, 646, 1105, 1323 |
| Eco57I | CTGAAG | 1 cut(s) | 906 |
| Eco72I | CACGTG | 1 cut(s) | 1187 |
| EcoT14I | CCWWGG | 1 cut(s) | 287 |
| ErhI | CCWWGG | 1 cut(s) | 287 |
| FaeI | CATG | 7 cut(s) | 291, 463, 653, 952, 1074, 1339, 1359 |
| FaqI | GGGAC | 4 cut(s) | 305, 338, 1091, 1150 |
| FatI | CATG | 7 cut(s) | 287, 459, 649, 948, 1070, 1335, 1355 |
| Fnu4HI | GCNGC | 3 cut(s) | 493, 496, 959 |
| FokI | GGATG | 1 cut(s) | 568 |
| Fsp4HI | GCNGC | 3 cut(s) | 493, 496, 959 |
| FspBI | CTAG | 1 cut(s) | 999 |
| GluI | GCNGC | 3 cut(s) | 493, 496, 959 |
| HaeIII | GGCC | 2 cut(s) | 756, 1007 |
| HapII | CCGG | 3 cut(s) | 344, 787, 1321 |
| HgaI | GACGC | 1 cut(s) | 171 |
| Hin1II | CATG | 7 cut(s) | 291, 463, 653, 952, 1074, 1339, 1359 |
| HincII | GTYRAC | 1 cut(s) | 594 |
| HindII | GTYRAC | 1 cut(s) | 594 |
| HinfI | GANTC | 3 cut(s) | 152, 283, 995 |
| HpaII | CCGG | 3 cut(s) | 344, 787, 1321 |
| HphI | GGTGA | 6 cut(s) | 29, 196, 359, 397, 1094, 1142 |
| Hpy166II | GTNNAC | 3 cut(s) | 395, 594, 736 |
| Hpy188I | TCNGA | 6 cut(s) | 161, 226, 253, 532, 570, 1161 |
| Hpy188III | TCNNGA | 8 cut(s) | 44, 136, 172, 368, 376, 460, 818, 1356 |
| Hpy8I | GTNNAC | 3 cut(s) | 395, 594, 736 |
| Hpy99I | CGWCG | 2 cut(s) | 33, 942 |
| HpyAV | CCTTC | 7 cut(s) | 115, 184, 327, 674, 805, 881, 1022 |
| HpyCH4III | ACNGT | 3 cut(s) | 73, 133, 771 |
| HpyCH4IV | ACGT | 7 cut(s) | 9, 268, 850, 937, 1033, 1100, 1186 |
| HpyCH4V | TGCA | 3 cut(s) | 277, 404, 559 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 109, 1275 |
| HpyF3I | CTNAG | 7 cut(s) | 99, 252, 503, 521, 539, 584, 1021 |
| HpySE526I | ACGT | 7 cut(s) | 9, 268, 850, 937, 1033, 1100, 1186 |
| Hsp92II | CATG | 7 cut(s) | 291, 463, 653, 952, 1074, 1339, 1359 |
| Kzo9I | GATC | 5 cut(s) | 79, 263, 340, 466, 565 |
| LmnI | GCTCC | 6 cut(s) | 517, 656, 789, 820, 955, 1339 |
| Lsp1109I | GCAGC | 2 cut(s) | 507, 970 |
| LweI | GCATC | 2 cut(s) | 174, 546 |
| MaeI | CTAG | 1 cut(s) | 999 |
| MaeII | ACGT | 7 cut(s) | 9, 268, 850, 937, 1033, 1100, 1186 |
| MaeIII | GTNAC | 4 cut(s) | 184, 549, 759, 859 |
| MalI | GATC | 5 cut(s) | 81, 265, 342, 468, 567 |
| MboI | GATC | 5 cut(s) | 79, 263, 340, 466, 565 |
| MboII | GAAGA | 8 cut(s) | 151, 462, 890, 1042, 1134, 1204, 1213, 1248 |
| MfeI | CAATTG | 1 cut(s) | 741 |
| MflI | RGATCY | 1 cut(s) | 565 |
| MlsI | TGGCCA | 1 cut(s) | 756 |
| MluCI | AATT | 6 cut(s) | 301, 432, 661, 741, 822, 1092 |
| MluNI | TGGCCA | 1 cut(s) | 756 |
| MlyI | GAGTC | 2 cut(s) | 292, 1004 |
| MmeI | TCCRAC | 2 cut(s) | 204, 543 |
| Mox20I | TGGCCA | 1 cut(s) | 756 |
| MscI | TGGCCA | 1 cut(s) | 756 |
| MseI | TTAA | 3 cut(s) | 246, 1227, 1293 |
| Msp20I | TGGCCA | 1 cut(s) | 756 |
| MspA1I | CMGCKG | 1 cut(s) | 583 |
| MspI | CCGG | 3 cut(s) | 344, 787, 1321 |
| MspR9I | CCNGG | 2 cut(s) | 345, 788 |
| MunI | CAATTG | 1 cut(s) | 741 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 109, 1275 |
| NciI | CCSGG | 2 cut(s) | 345, 788 |
| NcoI | CCATGG | 1 cut(s) | 287 |
| NdeII | GATC | 5 cut(s) | 79, 263, 340, 466, 565 |
| NlaIII | CATG | 7 cut(s) | 291, 463, 653, 952, 1074, 1339, 1359 |
| NlaIV | GGNNCC | 6 cut(s) | 321, 534, 567, 816, 1006, 1107 |
| NmuCI | GTSAC | 1 cut(s) | 184 |
| NspI | RCATGY | 1 cut(s) | 1074 |
| PagI | TCATGA | 2 cut(s) | 459, 1355 |
| PciI | ACATGT | 1 cut(s) | 1070 |
| PfeI | GAWTC | 1 cut(s) | 152 |
| PkrI | GCNGC | 3 cut(s) | 494, 497, 960 |
| PleI | GAGTC | 2 cut(s) | 291, 1003 |
| PmaCI | CACGTG | 1 cut(s) | 1187 |
| PmlI | CACGTG | 1 cut(s) | 1187 |
| PpsI | GAGTC | 2 cut(s) | 291, 1003 |
| Ppu21I | YACGTR | 2 cut(s) | 269, 1187 |
| PscI | ACATGT | 1 cut(s) | 1070 |
| PshBI | ATTAAT | 1 cut(s) | 1227 |
| Psp1406I | AACGTT | 1 cut(s) | 1100 |
| PspCI | CACGTG | 1 cut(s) | 1187 |
| PspN4I | GGNNCC | 6 cut(s) | 321, 534, 567, 816, 1006, 1107 |
| PspPI | GGNCC | 6 cut(s) | 319, 532, 646, 1005, 1105, 1323 |
| PsuI | RGATCY | 1 cut(s) | 565 |
| PvuII | CAGCTG | 1 cut(s) | 583 |
| RsaI | GTAC | 3 cut(s) | 66, 843, 1290 |
| RsaNI | GTAC | 3 cut(s) | 65, 842, 1289 |
| SaqAI | TTAA | 3 cut(s) | 246, 1227, 1293 |
| SatI | GCNGC | 3 cut(s) | 493, 496, 959 |
| Sau3AI | GATC | 5 cut(s) | 79, 263, 340, 466, 565 |
| Sau96I | GGNCC | 6 cut(s) | 319, 532, 646, 1005, 1105, 1323 |
| SchI | GAGTC | 2 cut(s) | 292, 1004 |
| ScrFI | CCNGG | 2 cut(s) | 345, 788 |
| SfaNI | GCATC | 2 cut(s) | 174, 546 |
| SinI | GGWCC | 5 cut(s) | 319, 532, 646, 1105, 1323 |
| SmlI | CTYRAG | 1 cut(s) | 366 |
| SmoI | CTYRAG | 1 cut(s) | 366 |
| Sse9I | AATT | 6 cut(s) | 301, 432, 661, 741, 822, 1092 |
| SsiI | CCGC | 1 cut(s) | 492 |
| SspI | AATATT | 1 cut(s) | 148 |
| SspMI | CTAG | 1 cut(s) | 999 |
| StyD4I | CCNGG | 2 cut(s) | 343, 786 |
| StyI | CCWWGG | 1 cut(s) | 287 |
| TaaI | ACNGT | 3 cut(s) | 73, 133, 771 |
| TaiI | ACGT | 7 cut(s) | 12, 271, 853, 940, 1036, 1103, 1189 |
| TaqI | TCGA | 4 cut(s) | 297, 511, 940, 1259 |
| TasI | AATT | 6 cut(s) | 301, 432, 661, 741, 822, 1092 |
| TatI | WGTACW | 1 cut(s) | 1288 |
| TauI | GCSGC | 1 cut(s) | 495 |
| TfiI | GAWTC | 1 cut(s) | 152 |
| Tru1I | TTAA | 3 cut(s) | 246, 1227, 1293 |
| Tru9I | TTAA | 3 cut(s) | 246, 1227, 1293 |
| TscAI | CASTG | 2 cut(s) | 321, 1119 |
| TseFI | GTSAC | 1 cut(s) | 184 |
| TseI | GCWGC | 2 cut(s) | 495, 958 |
| Tsp45I | GTSAC | 1 cut(s) | 184 |
| TspDTI | ATGAA | 4 cut(s) | 621, 824, 993, 1344 |
| TspGWI | ACGGA | 3 cut(s) | 345, 568, 707 |
| TspRI | CASTG | 2 cut(s) | 321, 1119 |
| VpaK11BI | GGWCC | 5 cut(s) | 319, 532, 646, 1105, 1323 |
| VspI | ATTAAT | 1 cut(s) | 1227 |
| XceI | RCATGY | 1 cut(s) | 1074 |
| XspI | CTAG | 1 cut(s) | 999 |