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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 234 |
| AciI | CCGC | 1 cut(s) | 335 |
| AclWI | GGATC | 3 cut(s) | 44, 69, 172 |
| AcoI | YGGCCR | 1 cut(s) | 27 |
| AfaI | GTAC | 1 cut(s) | 198 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 304, 377 |
| AluBI | AGCT | 1 cut(s) | 260 |
| AluI | AGCT | 1 cut(s) | 260 |
| Alw26I | GTCTC | 1 cut(s) | 144 |
| AlwI | GGATC | 3 cut(s) | 44, 69, 172 |
| AoxI | GGCC | 2 cut(s) | 27, 82 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 385 |
| AspA2I | CCTAGG | 1 cut(s) | 200 |
| AspLEI | GCGC | 1 cut(s) | 15 |
| AspS9I | GGNCC | 1 cut(s) | 265 |
| AsuHPI | GGTGA | 1 cut(s) | 187 |
| AvaII | GGWCC | 1 cut(s) | 265 |
| AvrII | CCTAGG | 1 cut(s) | 200 |
| BalI | TGGCCA | 1 cut(s) | 29 |
| BbsI | GAAGAC | 1 cut(s) | 26 |
| BccI | CCATC | 1 cut(s) | 311 |
| BcoDI | GTCTC | 1 cut(s) | 144 |
| BfaI | CTAG | 2 cut(s) | 201, 375 |
| BfmI | CTRYAG | 1 cut(s) | 65 |
| BfoI | RGCGCY | 1 cut(s) | 16 |
| BisI | GCNGC | 1 cut(s) | 335 |
| BlnI | CCTAGG | 1 cut(s) | 200 |
| BlsI | GCNGC | 1 cut(s) | 336 |
| Bme18I | GGWCC | 1 cut(s) | 265 |
| BmgT120I | GGNCC | 1 cut(s) | 265 |
| BmsI | GCATC | 1 cut(s) | 340 |
| BpiI | GAAGAC | 1 cut(s) | 26 |
| BsaJI | CCNNGG | 3 cut(s) | 30, 55, 200 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 304, 377 |
| BseDI | CCNNGG | 3 cut(s) | 30, 55, 200 |
| BseGI | GGATG | 3 cut(s) | 40, 102, 322 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 304, 377 |
| BseRI | GAGGAG | 1 cut(s) | 339 |
| BshFI | GGCC | 2 cut(s) | 29, 84 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 304, 377 |
| BsmAI | GTCTC | 1 cut(s) | 144 |
| BsmI | GAATGC | 1 cut(s) | 336 |
| BsnI | GGCC | 2 cut(s) | 29, 84 |
| Bsp143I | GATC | 3 cut(s) | 49, 74, 177 |
| BspACI | CCGC | 1 cut(s) | 335 |
| BspANI | GGCC | 2 cut(s) | 29, 84 |
| BspPI | GGATC | 3 cut(s) | 44, 69, 172 |
| BssECI | CCNNGG | 3 cut(s) | 30, 55, 200 |
| BssMI | GATC | 3 cut(s) | 49, 74, 177 |
| BssT1I | CCWWGG | 2 cut(s) | 30, 200 |
| Bst4CI | ACNGT | 1 cut(s) | 59 |
| BstDSI | CCRYGG | 1 cut(s) | 55 |
| BstF5I | GGATG | 3 cut(s) | 40, 102, 322 |
| BstH2I | RGCGCY | 1 cut(s) | 16 |
| BstHHI | GCGC | 1 cut(s) | 15 |
| BstKTI | GATC | 3 cut(s) | 52, 77, 180 |
| BstMAI | GTCTC | 1 cut(s) | 144 |
| BstMBI | GATC | 3 cut(s) | 49, 74, 177 |
| BstSFI | CTRYAG | 1 cut(s) | 65 |
| BstV2I | GAAGAC | 1 cut(s) | 26 |
| BsuRI | GGCC | 2 cut(s) | 29, 84 |
| BtgI | CCRYGG | 1 cut(s) | 55 |
| BtsCI | GGATG | 3 cut(s) | 40, 102, 322 |
| CfoI | GCGC | 1 cut(s) | 15 |
| Cfr13I | GGNCC | 1 cut(s) | 265 |
| Csp6I | GTAC | 1 cut(s) | 197 |
| CviAII | CATG | 3 cut(s) | 105, 212, 356 |
| CviJI | RGCY | 3 cut(s) | 29, 84, 260 |
| CviKI_1 | RGCY | 3 cut(s) | 29, 84, 260 |
| CviQI | GTAC | 1 cut(s) | 197 |
| DpnI | GATC | 3 cut(s) | 51, 76, 179 |
| DpnII | GATC | 3 cut(s) | 49, 74, 177 |
| EaeI | YGGCCR | 1 cut(s) | 27 |
| Eco130I | CCWWGG | 2 cut(s) | 30, 200 |
| Eco47I | GGWCC | 1 cut(s) | 265 |
| EcoT14I | CCWWGG | 2 cut(s) | 30, 200 |
| ErhI | CCWWGG | 2 cut(s) | 30, 200 |
| FaeI | CATG | 3 cut(s) | 108, 215, 359 |
| FatI | CATG | 3 cut(s) | 104, 211, 355 |
| FauNDI | CATATG | 1 cut(s) | 282 |
| Fnu4HI | GCNGC | 1 cut(s) | 335 |
| FokI | GGATG | 3 cut(s) | 47, 109, 329 |
| Fsp4HI | GCNGC | 1 cut(s) | 335 |
| FspBI | CTAG | 2 cut(s) | 201, 375 |
| GlaI | GCGC | 1 cut(s) | 14 |
| GluI | GCNGC | 1 cut(s) | 335 |
| HaeII | RGCGCY | 1 cut(s) | 16 |
| HaeIII | GGCC | 2 cut(s) | 29, 84 |
| HhaI | GCGC | 1 cut(s) | 15 |
| Hin1II | CATG | 3 cut(s) | 108, 215, 359 |
| Hin6I | GCGC | 1 cut(s) | 13 |
| HinP1I | GCGC | 1 cut(s) | 13 |
| HinfI | GANTC | 1 cut(s) | 290 |
| HphI | GGTGA | 1 cut(s) | 187 |
| Hpy166II | GTNNAC | 2 cut(s) | 62, 197 |
| Hpy188I | TCNGA | 2 cut(s) | 187, 372 |
| Hpy188III | TCNNGA | 1 cut(s) | 298 |
| Hpy8I | GTNNAC | 2 cut(s) | 62, 197 |
| HpyAV | CCTTC | 3 cut(s) | 94, 155, 237 |
| HpyCH4III | ACNGT | 1 cut(s) | 59 |
| HpyCH4IV | ACGT | 1 cut(s) | 23 |
| HpyCH4V | TGCA | 1 cut(s) | 280 |
| HpySE526I | ACGT | 1 cut(s) | 23 |
| Hsp92II | CATG | 3 cut(s) | 108, 215, 359 |
| HspAI | GCGC | 1 cut(s) | 13 |
| Kzo9I | GATC | 3 cut(s) | 49, 74, 177 |
| LmnI | GCTCC | 1 cut(s) | 220 |
| LpnPI | CCDG | 3 cut(s) | 53, 281, 311 |
| LweI | GCATC | 1 cut(s) | 340 |
| MaeI | CTAG | 2 cut(s) | 201, 375 |
| MaeII | ACGT | 1 cut(s) | 23 |
| MaeIII | GTNAC | 1 cut(s) | 118 |
| MalI | GATC | 3 cut(s) | 51, 76, 179 |
| MboI | GATC | 3 cut(s) | 49, 74, 177 |
| MboII | GAAGA | 1 cut(s) | 31 |
| MlsI | TGGCCA | 1 cut(s) | 29 |
| MluNI | TGGCCA | 1 cut(s) | 29 |
| MmeI | TCCRAC | 1 cut(s) | 395 |
| MnlI | CCTC | 5 cut(s) | 151, 166, 298, 317, 320 |
| Mox20I | TGGCCA | 1 cut(s) | 29 |
| MroXI | GAANNNNTTC | 1 cut(s) | 385 |
| MscI | TGGCCA | 1 cut(s) | 29 |
| MslI | CAYNNNNRTG | 2 cut(s) | 95, 285 |
| Msp20I | TGGCCA | 1 cut(s) | 29 |
| Mva1269I | GAATGC | 1 cut(s) | 336 |
| NdeI | CATATG | 1 cut(s) | 282 |
| NdeII | GATC | 3 cut(s) | 49, 74, 177 |
| NlaIII | CATG | 3 cut(s) | 108, 215, 359 |
| PctI | GAATGC | 1 cut(s) | 336 |
| PdmI | GAANNNNTTC | 1 cut(s) | 385 |
| PfeI | GAWTC | 1 cut(s) | 290 |
| PkrI | GCNGC | 1 cut(s) | 336 |
| PsiI | TTATAA | 1 cut(s) | 234 |
| PspPI | GGNCC | 1 cut(s) | 265 |
| RsaI | GTAC | 1 cut(s) | 198 |
| RsaNI | GTAC | 1 cut(s) | 197 |
| RseI | CAYNNNNRTG | 2 cut(s) | 95, 285 |
| SatI | GCNGC | 1 cut(s) | 335 |
| Sau3AI | GATC | 3 cut(s) | 49, 74, 177 |
| Sau96I | GGNCC | 1 cut(s) | 265 |
| SetI | ASST | 7 cut(s) | 26, 166, 177, 202, 248, 262, 270 |
| SfaNI | GCATC | 1 cut(s) | 340 |
| SfcI | CTRYAG | 1 cut(s) | 65 |
| SinI | GGWCC | 1 cut(s) | 265 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 95, 285 |
| SsiI | CCGC | 1 cut(s) | 335 |
| SspMI | CTAG | 2 cut(s) | 201, 375 |
| StyI | CCWWGG | 2 cut(s) | 30, 200 |
| TaaI | ACNGT | 1 cut(s) | 59 |
| TaiI | ACGT | 1 cut(s) | 26 |
| TaqI | TCGA | 4 cut(s) | 73, 110, 348, 394 |
| TauI | GCSGC | 1 cut(s) | 337 |
| TfiI | GAWTC | 1 cut(s) | 290 |
| TspDTI | ATGAA | 2 cut(s) | 113, 128 |
| TspGWI | ACGGA | 1 cut(s) | 253 |
| VpaK11BI | GGWCC | 1 cut(s) | 265 |
| XmaJI | CCTAGG | 1 cut(s) | 200 |
| XmnI | GAANNNNTTC | 1 cut(s) | 385 |
| XspI | CTAG | 2 cut(s) | 201, 375 |