Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 68 |
| AarI | CACCTGC | 1 cut(s) | 409 |
| Acc36I | ACCTGC | 1 cut(s) | 409 |
| AccB1I | GGYRCC | 1 cut(s) | 874 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 180 |
| AccBSI | CCGCTC | 1 cut(s) | 103 |
| AciI | CCGC | 1 cut(s) | 103 |
| AclWI | GGATC | 4 cut(s) | 335, 654, 740, 765 |
| AcoI | YGGCCR | 1 cut(s) | 96 |
| AcsI | RAATTY | 3 cut(s) | 371, 549, 813 |
| AcuI | CTGAAG | 2 cut(s) | 309, 1398 |
| AdeI | CACNNNGTG | 1 cut(s) | 1163 |
| AfaI | GTAC | 1 cut(s) | 1030 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 49, 180, 329, 361, 1398 |
| AgsI | TTSAA | 8 cut(s) | 523, 602, 907, 917, 934, 1038, 1064, 1154 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 85 |
| AhlI | ACTAGT | 1 cut(s) | 527 |
| AjiI | CACGTC | 1 cut(s) | 10 |
| AjnI | CCWGG | 2 cut(s) | 173, 343 |
| AluBI | AGCT | 5 cut(s) | 135, 498, 1006, 1100, 1353 |
| AluI | AGCT | 5 cut(s) | 135, 498, 1006, 1100, 1353 |
| Alw26I | GTCTC | 1 cut(s) | 1094 |
| AlwI | GGATC | 4 cut(s) | 335, 654, 740, 765 |
| Ama87I | CYCGRG | 3 cut(s) | 130, 568, 1391 |
| AoxI | GGCC | 1 cut(s) | 96 |
| ApeKI | GCWGC | 1 cut(s) | 668 |
| ApoI | RAATTY | 3 cut(s) | 371, 549, 813 |
| AseI | ATTAAT | 2 cut(s) | 689, 831 |
| AspS9I | GGNCC | 5 cut(s) | 79, 291, 352, 364, 1388 |
| AsuC2I | CCSGG | 1 cut(s) | 845 |
| AsuHPI | GGTGA | 6 cut(s) | 269, 494, 709, 1141, 1233, 1278 |
| AsuII | TTCGAA | 1 cut(s) | 553 |
| AvaI | CYCGRG | 3 cut(s) | 130, 568, 1391 |
| AvaII | GGWCC | 5 cut(s) | 79, 291, 352, 364, 1388 |
| BanI | GGYRCC | 1 cut(s) | 874 |
| BanII | GRGCYC | 1 cut(s) | 287 |
| BbsI | GAAGAC | 1 cut(s) | 530 |
| BbvI | GCAGC | 1 cut(s) | 655 |
| BccI | CCATC | 3 cut(s) | 323, 479, 1105 |
| BciT130I | CCWGG | 2 cut(s) | 175, 345 |
| BclI | TGATCA | 1 cut(s) | 1081 |
| BcnI | CCSGG | 1 cut(s) | 845 |
| BcoDI | GTCTC | 1 cut(s) | 1094 |
| BcuI | ACTAGT | 1 cut(s) | 527 |
| BfaI | CTAG | 4 cut(s) | 387, 528, 1290, 1356 |
| BfmI | CTRYAG | 1 cut(s) | 882 |
| BfuAI | ACCTGC | 1 cut(s) | 409 |
| BisI | GCNGC | 1 cut(s) | 669 |
| BlsI | GCNGC | 1 cut(s) | 670 |
| Bme1390I | CCNGG | 3 cut(s) | 175, 345, 845 |
| Bme18I | GGWCC | 5 cut(s) | 79, 291, 352, 364, 1388 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 85 |
| BmeT110I | CYCGRG | 3 cut(s) | 130, 568, 1391 |
| BmgBI | CACGTC | 1 cut(s) | 10 |
| BmgT120I | GGNCC | 5 cut(s) | 79, 291, 352, 364, 1388 |
| BmiI | GGNNCC | 8 cut(s) | 81, 284, 354, 876, 1053, 1389, 1390, 1403 |
| BmrFI | CCNGG | 3 cut(s) | 175, 345, 845 |
| BmrI | ACTGGG | 1 cut(s) | 432 |
| BmsI | GCATC | 2 cut(s) | 619, 1215 |
| BmuI | ACTGGG | 1 cut(s) | 432 |
| BpiI | GAAGAC | 1 cut(s) | 530 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 185, 217, 562, 594 |
| BpmI | CTGGAG | 1 cut(s) | 157 |
| Bpu14I | TTCGAA | 1 cut(s) | 553 |
| BpuEI | CTTGAG | 1 cut(s) | 1080 |
| BpuMI | CCSGG | 1 cut(s) | 845 |
| BsaI | GGTCTC | 1 cut(s) | 1094 |
| BsaJI | CCNNGG | 3 cut(s) | 173, 287, 1392 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 686, 716, 784, 814 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 49, 180, 329, 361, 1398 |
| Bse1I | ACTGG | 2 cut(s) | 427, 1055 |
| Bse3DI | GCAATG | 1 cut(s) | 1186 |
| BseBI | CCWGG | 2 cut(s) | 175, 345 |
| BseDI | CCNNGG | 3 cut(s) | 173, 287, 1392 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 49, 180, 329, 361, 1398 |
| BseMI | GCAATG | 1 cut(s) | 1186 |
| BseMII | CTCAG | 3 cut(s) | 494, 530, 998 |
| BseNI | ACTGG | 2 cut(s) | 427, 1055 |
| BseRI | GAGGAG | 5 cut(s) | 454, 869, 872, 875, 884 |
| BseXI | GCAGC | 1 cut(s) | 655 |
| BshFI | GGCC | 1 cut(s) | 98 |
| BshNI | GGYRCC | 1 cut(s) | 874 |
| BsiHKCI | CYCGRG | 3 cut(s) | 130, 568, 1391 |
| BsiSI | CCGG | 1 cut(s) | 844 |
| BslFI | GGGAC | 5 cut(s) | 20, 338, 487, 550, 1401 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 49, 180, 329, 361, 1398 |
| BsmAI | GTCTC | 1 cut(s) | 1094 |
| BsmFI | GGGAC | 5 cut(s) | 20, 338, 487, 550, 1401 |
| BsmI | GAATGC | 1 cut(s) | 276 |
| BsnI | GGCC | 1 cut(s) | 98 |
| Bso31I | GGTCTC | 1 cut(s) | 1094 |
| BsoBI | CYCGRG | 3 cut(s) | 130, 568, 1391 |
| Bsp119I | TTCGAA | 1 cut(s) | 553 |
| Bsp1286I | GDGCHC | 1 cut(s) | 287 |
| Bsp143I | GATC | 6 cut(s) | 340, 646, 745, 770, 895, 1081 |
| BspACI | CCGC | 1 cut(s) | 103 |
| BspANI | GGCC | 1 cut(s) | 98 |
| BspCNI | CTCAG | 3 cut(s) | 495, 531, 999 |
| BspLI | GGNNCC | 8 cut(s) | 81, 284, 354, 876, 1053, 1389, 1390, 1403 |
| BspMAI | CTGCAG | 1 cut(s) | 886 |
| BspMI | ACCTGC | 1 cut(s) | 409 |
| BspPI | GGATC | 4 cut(s) | 335, 654, 740, 765 |
| BspT104I | TTCGAA | 1 cut(s) | 553 |
| BspT107I | GGYRCC | 1 cut(s) | 874 |
| BspTNI | GGTCTC | 1 cut(s) | 1094 |
| BsrBI | CCGCTC | 1 cut(s) | 103 |
| BsrDI | GCAATG | 1 cut(s) | 1186 |
| BsrI | ACTGG | 2 cut(s) | 427, 1055 |
| BssECI | CCNNGG | 3 cut(s) | 173, 287, 1392 |
| BssMI | GATC | 6 cut(s) | 340, 646, 745, 770, 895, 1081 |
| BssT1I | CCWWGG | 1 cut(s) | 287 |
| Bst2UI | CCWGG | 2 cut(s) | 175, 345 |
| Bst4CI | ACNGT | 6 cut(s) | 364, 478, 592, 711, 723, 1033 |
| Bst6I | CTCTTC | 1 cut(s) | 997 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 271 |
| BstBI | TTCGAA | 1 cut(s) | 553 |
| BstDEI | CTNAG | 4 cut(s) | 503, 539, 1007, 1317 |
| BstKTI | GATC | 6 cut(s) | 343, 649, 748, 773, 898, 1084 |
| BstMAI | GTCTC | 1 cut(s) | 1094 |
| BstMBI | GATC | 6 cut(s) | 340, 646, 745, 770, 895, 1081 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 109, 271 |
| BstNI | CCWGG | 2 cut(s) | 175, 345 |
| BstSCI | CCNGG | 3 cut(s) | 173, 343, 843 |
| BstSFI | CTRYAG | 1 cut(s) | 882 |
| BstV1I | GCAGC | 1 cut(s) | 655 |
| BstV2I | GAAGAC | 1 cut(s) | 530 |
| BsuRI | GGCC | 1 cut(s) | 98 |
| BtrI | CACGTC | 1 cut(s) | 10 |
| BtsIMutI | CAGTG | 2 cut(s) | 597, 719 |
| BveI | ACCTGC | 1 cut(s) | 409 |
| Cfr13I | GGNCC | 5 cut(s) | 79, 291, 352, 364, 1388 |
| Csp6I | GTAC | 1 cut(s) | 1029 |
| CviAII | CATG | 4 cut(s) | 44, 650, 986, 1085 |
| CviQI | GTAC | 1 cut(s) | 1029 |
| DdeI | CTNAG | 4 cut(s) | 503, 539, 1007, 1317 |
| DpnI | GATC | 6 cut(s) | 342, 648, 747, 772, 897, 1083 |
| DpnII | GATC | 6 cut(s) | 340, 646, 745, 770, 895, 1081 |
| DraIII | CACNNNGTG | 1 cut(s) | 1163 |
| DriI | GACNNNNNGTC | 1 cut(s) | 85 |
| EaeI | YGGCCR | 1 cut(s) | 96 |
| Eam1104I | CTCTTC | 1 cut(s) | 997 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 85 |
| EarI | CTCTTC | 1 cut(s) | 997 |
| Eco130I | CCWWGG | 1 cut(s) | 287 |
| Eco24I | GRGCYC | 1 cut(s) | 287 |
| Eco31I | GGTCTC | 1 cut(s) | 1094 |
| Eco47I | GGWCC | 5 cut(s) | 79, 291, 352, 364, 1388 |
| Eco57I | CTGAAG | 2 cut(s) | 309, 1398 |
| Eco88I | CYCGRG | 3 cut(s) | 130, 568, 1391 |
| EcoO109I | RGGNCCY | 2 cut(s) | 79, 1388 |
| EcoRI | GAATTC | 1 cut(s) | 549 |
| EcoRII | CCWGG | 2 cut(s) | 173, 343 |
| EcoT14I | CCWWGG | 1 cut(s) | 287 |
| EcoT22I | ATGCAT | 1 cut(s) | 987 |
| EcoT38I | GRGCYC | 1 cut(s) | 287 |
| ErhI | CCWWGG | 1 cut(s) | 287 |
| FaeI | CATG | 4 cut(s) | 47, 653, 989, 1088 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 182, 214 |
| FaqI | GGGAC | 5 cut(s) | 20, 338, 487, 550, 1401 |
| FatI | CATG | 4 cut(s) | 43, 649, 985, 1084 |
| FauI | CCCGC | 1 cut(s) | 96 |
| FbaI | TGATCA | 1 cut(s) | 1081 |
| Fnu4HI | GCNGC | 1 cut(s) | 669 |
| FriOI | GRGCYC | 1 cut(s) | 287 |
| Fsp4HI | GCNGC | 1 cut(s) | 669 |
| FspBI | CTAG | 4 cut(s) | 387, 528, 1290, 1356 |
| GluI | GCNGC | 1 cut(s) | 669 |
| GsuI | CTGGAG | 1 cut(s) | 157 |
| HaeIII | GGCC | 1 cut(s) | 98 |
| HapII | CCGG | 1 cut(s) | 844 |
| Hin1II | CATG | 4 cut(s) | 47, 653, 989, 1088 |
| HindIII | AAGCTT | 1 cut(s) | 496 |
| HinfI | GANTC | 4 cut(s) | 152, 221, 989, 1214 |
| HpaII | CCGG | 1 cut(s) | 844 |
| HphI | GGTGA | 6 cut(s) | 269, 494, 709, 1141, 1233, 1278 |
| Hpy166II | GTNNAC | 2 cut(s) | 533, 1286 |
| Hpy188I | TCNGA | 9 cut(s) | 210, 328, 504, 540, 783, 820, 895, 1110, 1204 |
| Hpy188III | TCNNGA | 2 cut(s) | 130, 160 |
| Hpy8I | GTNNAC | 2 cut(s) | 533, 1286 |
| Hpy99I | CGWCG | 2 cut(s) | 33, 190 |
| HpyAV | CCTTC | 9 cut(s) | 184, 304, 333, 384, 538, 888, 933, 1058, 1202 |
| HpyCH4III | ACNGT | 6 cut(s) | 364, 478, 592, 711, 723, 1033 |
| HpyCH4IV | ACGT | 1 cut(s) | 9 |
| HpyCH4V | TGCA | 4 cut(s) | 671, 884, 985, 1228 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 109, 271 |
| HpyF3I | CTNAG | 4 cut(s) | 503, 539, 1007, 1317 |
| HpySE526I | ACGT | 1 cut(s) | 9 |
| Hsp92II | CATG | 4 cut(s) | 47, 653, 989, 1088 |
| KflI | GGGWCCC | 1 cut(s) | 1388 |
| Ksp22I | TGATCA | 1 cut(s) | 1081 |
| Kzo9I | GATC | 6 cut(s) | 340, 646, 745, 770, 895, 1081 |
| LmnI | GCTCC | 2 cut(s) | 282, 441 |
| Lsp1109I | GCAGC | 1 cut(s) | 655 |
| LweI | GCATC | 2 cut(s) | 619, 1215 |
| MaeI | CTAG | 4 cut(s) | 387, 528, 1290, 1356 |
| MaeII | ACGT | 1 cut(s) | 9 |
| MaeIII | GTNAC | 3 cut(s) | 257, 923, 976 |
| MalI | GATC | 6 cut(s) | 342, 648, 747, 772, 897, 1083 |
| MbiI | CCGCTC | 1 cut(s) | 103 |
| MboI | GATC | 6 cut(s) | 340, 646, 745, 770, 895, 1081 |
| MboII | GAAGA | 2 cut(s) | 535, 984 |
| MfeI | CAATTG | 1 cut(s) | 581 |
| MhlI | GDGCHC | 1 cut(s) | 287 |
| MlyI | GAGTC | 3 cut(s) | 161, 983, 1223 |
| MmeI | TCCRAC | 3 cut(s) | 39, 624, 657 |
| Mph1103I | ATGCAT | 1 cut(s) | 987 |
| MseI | TTAA | 5 cut(s) | 246, 689, 831, 888, 1185 |
| MspI | CCGG | 1 cut(s) | 844 |
| MspR9I | CCNGG | 3 cut(s) | 175, 345, 845 |
| MunI | CAATTG | 1 cut(s) | 581 |
| Mva1269I | GAATGC | 1 cut(s) | 276 |
| MvaI | CCWGG | 2 cut(s) | 175, 345 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 109, 271 |
| NciI | CCSGG | 1 cut(s) | 845 |
| NdeII | GATC | 6 cut(s) | 340, 646, 745, 770, 895, 1081 |
| NlaIII | CATG | 4 cut(s) | 47, 653, 989, 1088 |
| NlaIV | GGNNCC | 8 cut(s) | 81, 284, 354, 876, 1053, 1389, 1390, 1403 |
| NmeAIII | GCCGAG | 1 cut(s) | 124 |
| NmuCI | GTSAC | 3 cut(s) | 257, 923, 976 |
| NsiI | ATGCAT | 1 cut(s) | 987 |
| NspV | TTCGAA | 1 cut(s) | 553 |
| PaeR7I | CTCGAG | 1 cut(s) | 130 |
| PaqCI | CACCTGC | 1 cut(s) | 409 |
| PctI | GAATGC | 1 cut(s) | 276 |
| PfeI | GAWTC | 1 cut(s) | 221 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 180 |
| PfoI | TCCNGGA | 1 cut(s) | 843 |
| PkrI | GCNGC | 1 cut(s) | 670 |
| PleI | GAGTC | 3 cut(s) | 160, 983, 1222 |
| PpsI | GAGTC | 3 cut(s) | 160, 983, 1222 |
| PpuMI | RGGWCCY | 2 cut(s) | 79, 1388 |
| PshBI | ATTAAT | 2 cut(s) | 689, 831 |
| PsiI | TTATAA | 1 cut(s) | 68 |
| Psp5II | RGGWCCY | 2 cut(s) | 79, 1388 |
| Psp6I | CCWGG | 2 cut(s) | 173, 343 |
| PspGI | CCWGG | 2 cut(s) | 173, 343 |
| PspN4I | GGNNCC | 8 cut(s) | 81, 284, 354, 876, 1053, 1389, 1390, 1403 |
| PspPI | GGNCC | 5 cut(s) | 79, 291, 352, 364, 1388 |
| PspPPI | RGGWCCY | 2 cut(s) | 79, 1388 |
| PstI | CTGCAG | 1 cut(s) | 886 |
| RsaI | GTAC | 1 cut(s) | 1030 |
| RsaNI | GTAC | 1 cut(s) | 1029 |
| SaqAI | TTAA | 5 cut(s) | 246, 689, 831, 888, 1185 |
| SatI | GCNGC | 1 cut(s) | 669 |
| Sau3AI | GATC | 6 cut(s) | 340, 646, 745, 770, 895, 1081 |
| Sau96I | GGNCC | 5 cut(s) | 79, 291, 352, 364, 1388 |
| SchI | GAGTC | 3 cut(s) | 161, 983, 1223 |
| ScrFI | CCNGG | 3 cut(s) | 175, 345, 845 |
| SduI | GDGCHC | 1 cut(s) | 287 |
| SfaNI | GCATC | 2 cut(s) | 619, 1215 |
| SfcI | CTRYAG | 1 cut(s) | 882 |
| Sfr274I | CTCGAG | 1 cut(s) | 130 |
| SfuI | TTCGAA | 1 cut(s) | 553 |
| SinI | GGWCC | 5 cut(s) | 79, 291, 352, 364, 1388 |
| SlaI | CTCGAG | 1 cut(s) | 130 |
| SmlI | CTYRAG | 2 cut(s) | 130, 1095 |
| SmoI | CTYRAG | 2 cut(s) | 130, 1095 |
| SpeI | ACTAGT | 1 cut(s) | 527 |
| SsiI | CCGC | 1 cut(s) | 103 |
| SspI | AATATT | 1 cut(s) | 166 |
| SspMI | CTAG | 4 cut(s) | 387, 528, 1290, 1356 |
| StyD4I | CCNGG | 3 cut(s) | 173, 343, 843 |
| StyI | CCWWGG | 1 cut(s) | 287 |
| TaaI | ACNGT | 6 cut(s) | 364, 478, 592, 711, 723, 1033 |
| TaiI | ACGT | 1 cut(s) | 12 |
| TaqI | TCGA | 3 cut(s) | 131, 297, 553 |
| TaqII | GACCGA | 1 cut(s) | 340 |
| TfiI | GAWTC | 1 cut(s) | 221 |
| Tru1I | TTAA | 5 cut(s) | 246, 689, 831, 888, 1185 |
| Tru9I | TTAA | 5 cut(s) | 246, 689, 831, 888, 1185 |
| TscAI | CASTG | 2 cut(s) | 597, 726 |
| TseFI | GTSAC | 3 cut(s) | 257, 923, 976 |
| TseI | GCWGC | 1 cut(s) | 668 |
| Tsp45I | GTSAC | 3 cut(s) | 257, 923, 976 |
| TspDTI | ATGAA | 4 cut(s) | 572, 824, 987, 1221 |
| TspRI | CASTG | 2 cut(s) | 597, 726 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 180 |
| VpaK11BI | GGWCC | 5 cut(s) | 79, 291, 352, 364, 1388 |
| VspI | ATTAAT | 2 cut(s) | 689, 831 |
| XapI | RAATTY | 3 cut(s) | 371, 549, 813 |
| XhoI | CTCGAG | 1 cut(s) | 130 |
| XspI | CTAG | 4 cut(s) | 387, 528, 1290, 1356 |
| Zsp2I | ATGCAT | 1 cut(s) | 987 |