Rmu_sc0013280.1_g000003

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013280.1
OG0000022
Physical Location & Seq
Forward (+)
11303 .. 12604
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013280.1_g000003.1.cds

Sequence Viewer

Length: 1302 bp
atgggatggatgatctgctcagcataccgctcaacatgcagttcttttggattcgcatgggggatccctcccctgttcatggagcaagagaccggttttcaaattggcaatgcggtggggcaattcgtgcgtatggaggaatcggagaatgggatttatctgggttccaatttgaaagtccggatcctttttgatattgacaaacctctacgcagagtggcacatgtcaggcttcctggaaggagtaagggggcttgttttgagatcgattacctaaagcttcccaatttctgtgagtattgtgggactctctatcatgactcgaattcctgtgacttgtttaagtcgggagcgattgtagagaaacagtatgatcttttgctatgtgctgagaagaaggacaagtggttagctgaaaaagaagctcgtgcgagagaggaagccatggaaaacctcgttcgaaatgggcggagatttggaattctggaaaaagggaagggcgggtggtcgatgctggcaccagaatttcctctctctgggatggtccgtaatagagaggagtgggaaggagacgatggggtgactccgacgggtgatggaatggaggttgatagttttccggctgggacactgacagagggtgagcggtgtgtcaaacggcggagaatgacgacggtgggtatggtggagcccgttttggaaactgattctagggtggttaatgtcattaatggtagattggatctgtcgagtgcatcgaaggctgatgcatttgcttatggaaagaaagcgtcaatttcgaatccagggatagaggtgagtagtctgtcttccatgacttcggggcaggaaatttttctcccttcttctggggagttaatttcgcatgagatatctgatttggctaaggaggattcctcagctttgatgacatctgagacagctggtgatgggccttgcctaatagtttctgacaatgggctcgttacaagttcttctgaagatggccctgaggcaactatatcagggaaccgggttttcgtggctacagaaactcatggctcctttgattggcctaaagctaataaggggggtccactaaagtccgagggggccccaaaagtcaagaggcctgctgcagataaaagagtgaagactaaatggggtttcaagttgggtggcagtaagaataagaagactcccagtgtctcaaggtatcctaaggaaattgaagtgagaaatggacgtgctctgattcgttcctccgtgatgggtccggctttgacccatcacgagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

433

Amino Acids

47.37

Weight (kDa)

7.01

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 517
AccBSI CCGCTC 2 cut(s) 30, 646
AccIII TCCGGA 1 cut(s) 180
AciI CCGC 6 cut(s) 28, 113, 469, 501, 646, 661
AclWI GGATC 5 cut(s) 58, 71, 178, 191, 750
AcsI RAATTY 4 cut(s) 325, 480, 524, 852
AcuI CTGAAG 1 cut(s) 1020
AfiI CCNNNNNNNGG 4 cut(s) 79, 536, 869, 1071
AflIII ACRYGT 1 cut(s) 223
AgeI ACCGGT 1 cut(s) 92
AgsI TTSAA 4 cut(s) 101, 175, 1171, 1232
AjiI CACGTC 1 cut(s) 1247
AjnI CCWGG 2 cut(s) 235, 805
AluBI AGCT 6 cut(s) 280, 413, 425, 923, 944, 1082
AluI AGCT 6 cut(s) 280, 413, 425, 923, 944, 1082
Alw21I GWGCWC 1 cut(s) 1252
Alw26I GTCTC 4 cut(s) 83, 564, 932, 1213
AlwI GGATC 5 cut(s) 58, 71, 178, 191, 750
Aor13HI TCCGGA 1 cut(s) 180
AoxI GGCC 5 cut(s) 953, 1006, 1073, 1113, 1130
ApaI GGGCCC 1 cut(s) 1117
ApeKI GCWGC 1 cut(s) 1136
ApoI RAATTY 4 cut(s) 325, 480, 524, 852
AseI ATTAAT 1 cut(s) 729
AsiGI ACCGGT 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 855
AspS9I GGNCC 7 cut(s) 544, 953, 1007, 1094, 1113, 1114, 1274
AsuC2I CCSGG 1 cut(s) 1034
AsuHPI GGTGA 5 cut(s) 592, 605, 653, 829, 959
AsuII TTCGAA 2 cut(s) 460, 800
AvaII GGWCC 3 cut(s) 544, 1094, 1274
AxyI CCTNAGG 2 cut(s) 1011, 1221
BaeGI GKGCMC 1 cut(s) 1117
BamHI GGATCC 2 cut(s) 63, 183
BanI GGYRCC 1 cut(s) 517
BanII GRGCYC 3 cut(s) 693, 984, 1117
BarI GAAGNNNNNNTAC 2 cut(s) 814, 846
BauI CACGAG 2 cut(s) 426, 1292
BbsI GAAGAC 3 cut(s) 822, 1160, 1202
Bbv12I GWGCWC 1 cut(s) 1252
BbvCI CCTCAGC 1 cut(s) 919
BbvI GCAGC 1 cut(s) 1123
BccI CCATC 7 cut(s) 535, 569, 590, 944, 998, 1264, 1296
BceAI ACGGC 1 cut(s) 674
BciT130I CCWGG 2 cut(s) 237, 807
BciVI GTATCC 1 cut(s) 1227
BcnI CCSGG 1 cut(s) 1034
BcoDI GTCTC 4 cut(s) 83, 564, 932, 1213
BfaI CTAG 1 cut(s) 711
BfmI CTRYAG 2 cut(s) 1047, 1137
BfuI GTATCC 1 cut(s) 1227
BisI GCNGC 1 cut(s) 1137
BlpI GCTNAGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 1138
Bme1390I CCNGG 3 cut(s) 237, 807, 1034
Bme18I GGWCC 3 cut(s) 544, 1094, 1274
BmgBI CACGTC 1 cut(s) 1247
BmgT120I GGNCC 7 cut(s) 544, 953, 1007, 1094, 1113, 1114, 1274
BmrFI CCNGG 3 cut(s) 237, 807, 1034
BmrI ACTGGG 1 cut(s) 1197
BmsI GCATC 3 cut(s) 501, 757, 764
BmuI ACTGGG 1 cut(s) 1197
BpiI GAAGAC 3 cut(s) 822, 1160, 1202
BplI GAGNNNNNCTC 2 cut(s) 902, 934
Bpu10I CCTNAGC 2 cut(s) 906, 919
Bpu1102I GCTNAGC 1 cut(s) 19
Bpu14I TTCGAA 2 cut(s) 460, 800
BpuEI CTTGAG 1 cut(s) 1195
BpuMI CCSGG 1 cut(s) 1034
Bsa29I ATCGAT 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 444, 806, 1107
BsaWI WCCGGW 2 cut(s) 92, 180
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 536, 869, 1071
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 1203
Bse21I CCTNAGG 2 cut(s) 1011, 1221
Bse3DI GCAATG 1 cut(s) 115
BseAI TCCGGA 1 cut(s) 180
BseBI CCWGG 2 cut(s) 237, 807
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 3 cut(s) 444, 806, 1107
BseGI GGATG 3 cut(s) 11, 15, 546
BseLI CCNNNNNNNGG 4 cut(s) 79, 536, 869, 1071
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 5 cut(s) 33, 381, 927, 933, 1002
BseNI ACTGG 1 cut(s) 1203
BseRI GAGGAG 1 cut(s) 572
BseSI GKGCMC 1 cut(s) 1117
BseXI GCAGC 1 cut(s) 1123
BseYI CCCAGC 1 cut(s) 623
BshFI GGCC 5 cut(s) 955, 1008, 1075, 1115, 1132
BshNI GGYRCC 1 cut(s) 517
BshTI ACCGGT 1 cut(s) 92
BshVI ATCGAT 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 1252
BsiSI CCGG 5 cut(s) 93, 181, 620, 1033, 1277
BslFI GGGAC 2 cut(s) 319, 640
BslI CCNNNNNNNGG 4 cut(s) 79, 536, 869, 1071
BsmAI GTCTC 4 cut(s) 83, 564, 932, 1213
BsmBI CGTCTC 1 cut(s) 564
BsmFI GGGAC 2 cut(s) 319, 640
BsnI GGCC 5 cut(s) 955, 1008, 1075, 1115, 1132
Bso31I GGTCTC 1 cut(s) 83
Bsp119I TTCGAA 2 cut(s) 460, 800
Bsp120I GGGCCC 1 cut(s) 1113
Bsp1286I GDGCHC 4 cut(s) 693, 984, 1117, 1252
Bsp13I TCCGGA 1 cut(s) 180
Bsp143I GATC 6 cut(s) 12, 63, 183, 264, 373, 742
Bsp1720I GCTNAGC 1 cut(s) 19
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 6 cut(s) 28, 113, 469, 501, 646, 661
BspANI GGCC 5 cut(s) 955, 1008, 1075, 1115, 1132
BspCNI CTCAG 5 cut(s) 32, 382, 928, 932, 1003
BspDI ATCGAT 1 cut(s) 267
BspEI TCCGGA 1 cut(s) 180
BspHI TCATGA 1 cut(s) 316
BspMAI CTGCAG 1 cut(s) 1141
BspPI GGATC 5 cut(s) 58, 71, 178, 191, 750
BspT104I TTCGAA 2 cut(s) 460, 800
BspT107I GGYRCC 1 cut(s) 517
BspTNI GGTCTC 1 cut(s) 83
BsrBI CCGCTC 2 cut(s) 30, 646
BsrDI GCAATG 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 1203
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 3 cut(s) 444, 806, 1107
BssMI GATC 6 cut(s) 12, 63, 183, 264, 373, 742
BssSI CACGAG 2 cut(s) 426, 1292
BssT1I CCWWGG 1 cut(s) 444
Bst2BI CACGAG 2 cut(s) 426, 1292
Bst2UI CCWGG 2 cut(s) 237, 807
Bst4CI ACNGT 2 cut(s) 369, 676
BstAPI GCANNNNNTGC 1 cut(s) 127
BstBI TTCGAA 2 cut(s) 460, 800
BstC8I GCNNGC 2 cut(s) 516, 1134
BstDEI CTNAG 7 cut(s) 19, 390, 906, 919, 936, 1011, 1221
BstDSI CCRYGG 1 cut(s) 444
BstF5I GGATG 3 cut(s) 11, 15, 546
BstKTI GATC 6 cut(s) 15, 66, 186, 267, 376, 745
BstMAI GTCTC 4 cut(s) 83, 564, 932, 1213
BstMBI GATC 6 cut(s) 12, 63, 183, 264, 373, 742
BstMWI GCNNNNNNNGC 3 cut(s) 36, 127, 761
BstNI CCWGG 2 cut(s) 237, 807
BstNSI RCATGY 2 cut(s) 39, 227
BstSCI CCNGG 3 cut(s) 235, 805, 1032
BstSFI CTRYAG 2 cut(s) 1047, 1137
BstSLI GKGCMC 1 cut(s) 1117
BstV1I GCAGC 1 cut(s) 1123
BstV2I GAAGAC 3 cut(s) 822, 1160, 1202
BstX2I RGATCY 3 cut(s) 63, 183, 742
BstYI RGATCY 3 cut(s) 63, 183, 742
Bsu15I ATCGAT 1 cut(s) 267
Bsu36I CCTNAGG 2 cut(s) 1011, 1221
BsuI GTATCC 1 cut(s) 1227
BsuRI GGCC 5 cut(s) 955, 1008, 1075, 1115, 1132
BsuTUI ATCGAT 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 444
BtrI CACGTC 1 cut(s) 1247
BtsCI GGATG 3 cut(s) 11, 15, 546
BtsIMutI CAGTG 2 cut(s) 629, 1210
Cac8I GCNNGC 2 cut(s) 516, 1134
CciI TCATGA 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 7 cut(s) 544, 953, 1007, 1094, 1113, 1114, 1274
ClaI ATCGAT 1 cut(s) 267
CseI GACGC 1 cut(s) 780
CspAI ACCGGT 1 cut(s) 92
CspCI CAANNNNNGTGG 2 cut(s) 1159, 1194
CviAII CATG 9 cut(s) 36, 57, 79, 224, 317, 445, 835, 887, 1058
DdeI CTNAG 7 cut(s) 19, 390, 906, 919, 936, 1011, 1221
DpnI GATC 6 cut(s) 14, 65, 185, 266, 375, 744
DpnII GATC 6 cut(s) 12, 63, 183, 264, 373, 742
EciI GGCGGA 2 cut(s) 484, 676
Eco130I CCWWGG 1 cut(s) 444
Eco147I AGGCCT 1 cut(s) 1132
Eco24I GRGCYC 3 cut(s) 693, 984, 1117
Eco31I GGTCTC 1 cut(s) 83
Eco32I GATATC 1 cut(s) 894
Eco47I GGWCC 3 cut(s) 544, 1094, 1274
Eco57I CTGAAG 1 cut(s) 1020
Eco81I CCTNAGG 2 cut(s) 1011, 1221
EcoO109I RGGNCCY 2 cut(s) 1113, 1114
EcoRI GAATTC 2 cut(s) 325, 480
EcoRII CCWGG 2 cut(s) 235, 805
EcoRV GATATC 1 cut(s) 894
EcoT14I CCWWGG 1 cut(s) 444
EcoT22I ATGCAT 1 cut(s) 772
EcoT38I GRGCYC 3 cut(s) 693, 984, 1117
ErhI CCWWGG 1 cut(s) 444
Esp3I CGTCTC 1 cut(s) 564
FaeI CATG 9 cut(s) 39, 60, 82, 227, 320, 448, 838, 890, 1061
FaqI GGGAC 2 cut(s) 319, 640
FatI CATG 9 cut(s) 35, 56, 78, 223, 316, 444, 834, 886, 1057
FauI CCCGC 1 cut(s) 494
Fnu4HI GCNGC 1 cut(s) 1137
FokI GGATG 3 cut(s) 18, 22, 553
FriOI GRGCYC 3 cut(s) 693, 984, 1117
Fsp4HI GCNGC 1 cut(s) 1137
FspBI CTAG 1 cut(s) 711
GluI GCNGC 1 cut(s) 1137
GsaI CCCAGC 1 cut(s) 627
HaeIII GGCC 5 cut(s) 955, 1008, 1075, 1115, 1132
HapII CCGG 5 cut(s) 93, 181, 620, 1033, 1277
HgaI GACGC 1 cut(s) 780
Hin1II CATG 9 cut(s) 39, 60, 82, 227, 320, 448, 838, 890, 1061
HindIII AAGCTT 1 cut(s) 278
HpaII CCGG 5 cut(s) 93, 181, 620, 1033, 1277
HphI GGTGA 5 cut(s) 592, 605, 653, 829, 959
Hpy166II GTNNAC 1 cut(s) 1097
Hpy188I TCNGA 8 cut(s) 145, 588, 898, 937, 973, 1000, 1108, 1254
Hpy188III TCNNGA 6 cut(s) 181, 317, 348, 485, 1126, 1292
Hpy8I GTNNAC 1 cut(s) 1097
Hpy99I CGWCG 2 cut(s) 592, 676
HpyAV CCTTC 6 cut(s) 234, 391, 490, 560, 754, 873
HpyCH4III ACNGT 2 cut(s) 369, 676
HpyCH4IV ACGT 1 cut(s) 1246
HpyCH4V TGCA 4 cut(s) 39, 755, 770, 1139
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 127, 761
HpyF3I CTNAG 7 cut(s) 19, 390, 906, 919, 936, 1011, 1221
HpySE526I ACGT 1 cut(s) 1246
Hsp92II CATG 9 cut(s) 39, 60, 82, 227, 320, 448, 838, 890, 1061
Kpn2I TCCGGA 1 cut(s) 180
Kzo9I GATC 6 cut(s) 12, 63, 183, 264, 373, 742
LmnI GCTCC 4 cut(s) 82, 350, 688, 1067
Lsp1109I GCAGC 1 cut(s) 1123
LweI GCATC 3 cut(s) 501, 757, 764
MaeI CTAG 1 cut(s) 711
MaeII ACGT 1 cut(s) 1246
MaeIII GTNAC 3 cut(s) 332, 580, 985
MalI GATC 6 cut(s) 14, 65, 185, 266, 375, 744
MbiI CCGCTC 2 cut(s) 30, 646
MboI GATC 6 cut(s) 12, 63, 183, 264, 373, 742
MboII GAAGA 7 cut(s) 406, 822, 858, 987, 1013, 1165, 1207
MflI RGATCY 3 cut(s) 63, 183, 742
MhlI GDGCHC 4 cut(s) 693, 984, 1117, 1252
MlyI GAGTC 4 cut(s) 301, 314, 577, 1192
MmeI TCCRAC 1 cut(s) 611
Mph1103I ATGCAT 1 cut(s) 772
MroI TCCGGA 1 cut(s) 180
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 4 cut(s) 342, 720, 729, 878
MspA1I CMGCKG 1 cut(s) 944
MspI CCGG 5 cut(s) 93, 181, 620, 1033, 1277
MspR9I CCNGG 3 cut(s) 237, 807, 1034
MvaI CCWGG 2 cut(s) 237, 807
MwoI GCNNNNNNNGC 3 cut(s) 36, 127, 761
NciI CCSGG 1 cut(s) 1034
NcoI CCATGG 1 cut(s) 444
NdeII GATC 6 cut(s) 12, 63, 183, 264, 373, 742
NlaIII CATG 9 cut(s) 39, 60, 82, 227, 320, 448, 838, 890, 1061
NmuCI GTSAC 2 cut(s) 332, 580
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 2 cut(s) 39, 227
NspV TTCGAA 2 cut(s) 460, 800
PagI TCATGA 1 cut(s) 316
PceI AGGCCT 1 cut(s) 1132
PciI ACATGT 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 755
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 6 cut(s) 51, 140, 707, 802, 914, 1255
PfoI TCCNGGA 1 cut(s) 235
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 1 cut(s) 1138
PleI GAGTC 4 cut(s) 301, 314, 577, 1192
PpsI GAGTC 4 cut(s) 301, 314, 577, 1192
PscI ACATGT 1 cut(s) 223
PshBI ATTAAT 1 cut(s) 729
Psp6I CCWGG 2 cut(s) 235, 805
PspFI CCCAGC 1 cut(s) 623
PspGI CCWGG 2 cut(s) 235, 805
PspOMI GGGCCC 1 cut(s) 1113
PspPI GGNCC 7 cut(s) 544, 953, 1007, 1094, 1113, 1114, 1274
PstI CTGCAG 1 cut(s) 1141
PsuI RGATCY 3 cut(s) 63, 183, 742
PvuII CAGCTG 1 cut(s) 944
SaqAI TTAA 4 cut(s) 342, 720, 729, 878
SatI GCNGC 1 cut(s) 1137
Sau3AI GATC 6 cut(s) 12, 63, 183, 264, 373, 742
Sau96I GGNCC 7 cut(s) 544, 953, 1007, 1094, 1113, 1114, 1274
SchI GAGTC 4 cut(s) 301, 314, 577, 1192
ScrFI CCNGG 3 cut(s) 237, 807, 1034
SduI GDGCHC 4 cut(s) 693, 984, 1117, 1252
SfaNI GCATC 3 cut(s) 501, 757, 764
SfcI CTRYAG 2 cut(s) 1047, 1137
SfuI TTCGAA 2 cut(s) 460, 800
SinI GGWCC 3 cut(s) 544, 1094, 1274
SmlI CTYRAG 1 cut(s) 1210
SmoI CTYRAG 1 cut(s) 1210
SseBI AGGCCT 1 cut(s) 1132
SsiI CCGC 6 cut(s) 28, 113, 469, 501, 646, 661
SspMI CTAG 1 cut(s) 711
StuI AGGCCT 1 cut(s) 1132
StyD4I CCNGG 3 cut(s) 235, 805, 1032
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 2 cut(s) 369, 676
TaiI ACGT 1 cut(s) 1249
TaqI TCGA 7 cut(s) 267, 323, 460, 509, 749, 758, 800
TfiI GAWTC 6 cut(s) 51, 140, 707, 802, 914, 1255
Tru1I TTAA 4 cut(s) 342, 720, 729, 878
Tru9I TTAA 4 cut(s) 342, 720, 729, 878
TscAI CASTG 2 cut(s) 636, 1210
TseFI GTSAC 2 cut(s) 332, 580
TseI GCWGC 1 cut(s) 1136
Tsp45I GTSAC 2 cut(s) 332, 580
TspDTI ATGAA 1 cut(s) 67
TspGWI ACGGA 2 cut(s) 536, 1255
TspRI CASTG 2 cut(s) 636, 1210
VpaK11BI GGWCC 3 cut(s) 544, 1094, 1274
VspI ATTAAT 1 cut(s) 729
XapI RAATTY 4 cut(s) 325, 480, 524, 852
XceI RCATGY 2 cut(s) 39, 227
XmnI GAANNNNTTC 1 cut(s) 855
XspI CTAG 1 cut(s) 711
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.