ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 145 |
| AccB1I | GGYRCC | 1 cut(s) | 565 |
| AciI | CCGC | 3 cut(s) | 38, 238, 767 |
| AclWI | GGATC | 2 cut(s) | 764, 777 |
| AcsI | RAATTY | 4 cut(s) | 20, 422, 446, 607 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 237, 375, 435, 576, 648 |
| AflIII | ACRYGT | 1 cut(s) | 93 |
| AgsI | TTSAA | 3 cut(s) | 187, 735, 789 |
| AjnI | CCWGG | 1 cut(s) | 230 |
| Alw26I | GTCTC | 3 cut(s) | 402, 506, 548 |
| AlwI | GGATC | 2 cut(s) | 764, 777 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 683 |
| AoxI | GGCC | 2 cut(s) | 160, 365 |
| ApeKI | GCWGC | 3 cut(s) | 151, 668, 683 |
| ApoI | RAATTY | 4 cut(s) | 20, 422, 446, 607 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 333 |
| AspLEI | GCGC | 1 cut(s) | 708 |
| AspS9I | GGNCC | 2 cut(s) | 161, 366 |
| AsuHPI | GGTGA | 6 cut(s) | 143, 281, 397, 418, 488, 752 |
| BaeGI | GKGCMC | 1 cut(s) | 570 |
| BamHI | GGATCC | 1 cut(s) | 769 |
| BanI | GGYRCC | 1 cut(s) | 565 |
| BbsI | GAAGAC | 1 cut(s) | 386 |
| BbvI | GCAGC | 3 cut(s) | 163, 655, 670 |
| BccI | CCATC | 2 cut(s) | 595, 640 |
| BciT130I | CCWGG | 1 cut(s) | 232 |
| BcoDI | GTCTC | 3 cut(s) | 402, 506, 548 |
| BfaI | CTAG | 1 cut(s) | 636 |
| BfuAI | ACCTGC | 1 cut(s) | 145 |
| BisI | GCNGC | 3 cut(s) | 152, 669, 684 |
| BlpI | GCTNAGC | 1 cut(s) | 34 |
| BlsI | GCNGC | 3 cut(s) | 153, 670, 685 |
| Bme1390I | CCNGG | 1 cut(s) | 232 |
| BmgT120I | GGNCC | 2 cut(s) | 161, 366 |
| BmiI | GGNNCC | 3 cut(s) | 368, 567, 771 |
| BmrFI | CCNGG | 1 cut(s) | 232 |
| BmrI | ACTGGG | 1 cut(s) | 773 |
| BmsI | GCATC | 3 cut(s) | 91, 225, 346 |
| BmuI | ACTGGG | 1 cut(s) | 773 |
| BpiI | GAAGAC | 1 cut(s) | 386 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 34 |
| BsaBI | GATNNNNATC | 1 cut(s) | 360 |
| BsaJI | CCNNGG | 3 cut(s) | 119, 230, 575 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 237, 375, 435, 576, 648 |
| Bse1I | ACTGG | 3 cut(s) | 709, 742, 779 |
| Bse8I | GATNNNNATC | 1 cut(s) | 360 |
| BseBI | CCWGG | 1 cut(s) | 232 |
| BseDI | CCNNGG | 3 cut(s) | 119, 230, 575 |
| BseGI | GGATG | 5 cut(s) | 240, 246, 298, 508, 727 |
| BseJI | GATNNNNATC | 1 cut(s) | 360 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 237, 375, 435, 576, 648 |
| BseMII | CTCAG | 3 cut(s) | 182, 474, 562 |
| BseNI | ACTGG | 3 cut(s) | 709, 742, 779 |
| BseSI | GKGCMC | 1 cut(s) | 570 |
| BseXI | GCAGC | 3 cut(s) | 163, 655, 670 |
| BshFI | GGCC | 2 cut(s) | 162, 367 |
| BshNI | GGYRCC | 1 cut(s) | 565 |
| BsiSI | CCGG | 1 cut(s) | 642 |
| BslFI | GGGAC | 1 cut(s) | 24 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 237, 375, 435, 576, 648 |
| BsmAI | GTCTC | 3 cut(s) | 402, 506, 548 |
| BsmBI | CGTCTC | 1 cut(s) | 506 |
| BsmFI | GGGAC | 1 cut(s) | 24 |
| BsmI | GAATGC | 1 cut(s) | 748 |
| BsnI | GGCC | 2 cut(s) | 162, 367 |
| Bsp1286I | GDGCHC | 1 cut(s) | 570 |
| Bsp143I | GATC | 2 cut(s) | 590, 769 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 34 |
| BspACI | CCGC | 3 cut(s) | 38, 238, 767 |
| BspANI | GGCC | 2 cut(s) | 162, 367 |
| BspCNI | CTCAG | 3 cut(s) | 183, 475, 561 |
| BspLI | GGNNCC | 3 cut(s) | 368, 567, 771 |
| BspMI | ACCTGC | 1 cut(s) | 145 |
| BspPI | GGATC | 2 cut(s) | 764, 777 |
| BspT107I | GGYRCC | 1 cut(s) | 565 |
| BsrI | ACTGG | 3 cut(s) | 709, 742, 779 |
| BssECI | CCNNGG | 3 cut(s) | 119, 230, 575 |
| BssMI | GATC | 2 cut(s) | 590, 769 |
| BssT1I | CCWWGG | 2 cut(s) | 119, 575 |
| Bst2UI | CCWGG | 1 cut(s) | 232 |
| Bst4CI | ACNGT | 4 cut(s) | 49, 147, 385, 500 |
| Bst6I | CTCTTC | 1 cut(s) | 339 |
| BstDEI | CTNAG | 4 cut(s) | 34, 191, 483, 548 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 433 |
| BstF5I | GGATG | 5 cut(s) | 240, 246, 298, 508, 727 |
| BstHHI | GCGC | 1 cut(s) | 708 |
| BstKTI | GATC | 2 cut(s) | 593, 772 |
| BstMAI | GTCTC | 3 cut(s) | 402, 506, 548 |
| BstMBI | GATC | 2 cut(s) | 590, 769 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 628 |
| BstNI | CCWGG | 1 cut(s) | 232 |
| BstNSI | RCATGY | 2 cut(s) | 97, 200 |
| BstSCI | CCNGG | 1 cut(s) | 230 |
| BstSLI | GKGCMC | 1 cut(s) | 570 |
| BstV1I | GCAGC | 3 cut(s) | 163, 655, 670 |
| BstV2I | GAAGAC | 1 cut(s) | 386 |
| BstX2I | RGATCY | 1 cut(s) | 769 |
| BstYI | RGATCY | 1 cut(s) | 769 |
| BsuRI | GGCC | 2 cut(s) | 162, 367 |
| BtsCI | GGATG | 5 cut(s) | 240, 246, 298, 508, 727 |
| BtsIMutI | CAGTG | 3 cut(s) | 54, 537, 618 |
| BveI | ACCTGC | 1 cut(s) | 145 |
| CaiI | CAGNNNCTG | 1 cut(s) | 683 |
| CfoI | GCGC | 1 cut(s) | 708 |
| Cfr13I | GGNCC | 2 cut(s) | 161, 366 |
| CviAII | CATG | 3 cut(s) | 94, 197, 215 |
| CviJI | RGCY | 8 cut(s) | 33, 118, 162, 367, 439, 515, 622, 683 |
| CviKI_1 | RGCY | 8 cut(s) | 33, 118, 162, 367, 439, 515, 622, 683 |
| DdeI | CTNAG | 4 cut(s) | 34, 191, 483, 548 |
| DpnI | GATC | 2 cut(s) | 592, 771 |
| DpnII | GATC | 2 cut(s) | 590, 769 |
| Eam1104I | CTCTTC | 1 cut(s) | 339 |
| EarI | CTCTTC | 1 cut(s) | 339 |
| Eco130I | CCWWGG | 2 cut(s) | 119, 575 |
| Eco32I | GATATC | 1 cut(s) | 697 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 433 |
| EcoRI | GAATTC | 1 cut(s) | 422 |
| EcoRII | CCWGG | 1 cut(s) | 230 |
| EcoRV | GATATC | 1 cut(s) | 697 |
| EcoT14I | CCWWGG | 2 cut(s) | 119, 575 |
| EcoT22I | ATGCAT | 1 cut(s) | 84 |
| ErhI | CCWWGG | 2 cut(s) | 119, 575 |
| Esp3I | CGTCTC | 1 cut(s) | 506 |
| FaeI | CATG | 3 cut(s) | 97, 200, 218 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 512, 544 |
| FaqI | GGGAC | 1 cut(s) | 24 |
| FatI | CATG | 3 cut(s) | 93, 196, 214 |
| Fnu4HI | GCNGC | 3 cut(s) | 152, 669, 684 |
| FokI | GGATG | 5 cut(s) | 247, 253, 305, 495, 734 |
| Fsp4HI | GCNGC | 3 cut(s) | 152, 669, 684 |
| FspBI | CTAG | 1 cut(s) | 636 |
| GlaI | GCGC | 1 cut(s) | 707 |
| GluI | GCNGC | 3 cut(s) | 152, 669, 684 |
| HaeIII | GGCC | 2 cut(s) | 162, 367 |
| HapII | CCGG | 1 cut(s) | 642 |
| HhaI | GCGC | 1 cut(s) | 708 |
| Hin1II | CATG | 3 cut(s) | 97, 200, 218 |
| Hin6I | GCGC | 1 cut(s) | 706 |
| HinP1I | GCGC | 1 cut(s) | 706 |
| HinfI | GANTC | 5 cut(s) | 12, 187, 346, 556, 616 |
| HpaII | CCGG | 1 cut(s) | 642 |
| HphI | GGTGA | 6 cut(s) | 143, 281, 397, 418, 488, 752 |
| Hpy166II | GTNNAC | 2 cut(s) | 464, 537 |
| Hpy188I | TCNGA | 4 cut(s) | 192, 345, 600, 763 |
| Hpy188III | TCNNGA | 1 cut(s) | 16 |
| Hpy8I | GTNNAC | 2 cut(s) | 464, 537 |
| HpyAV | CCTTC | 3 cut(s) | 174, 181, 647 |
| HpyCH4III | ACNGT | 4 cut(s) | 49, 147, 385, 500 |
| HpyCH4V | TGCA | 5 cut(s) | 82, 151, 178, 375, 671 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 628 |
| HpyF3I | CTNAG | 4 cut(s) | 34, 191, 483, 548 |
| Hsp92II | CATG | 3 cut(s) | 97, 200, 218 |
| HspAI | GCGC | 1 cut(s) | 706 |
| Kzo9I | GATC | 2 cut(s) | 590, 769 |
| Lsp1109I | GCAGC | 3 cut(s) | 163, 655, 670 |
| LweI | GCATC | 3 cut(s) | 91, 225, 346 |
| MaeI | CTAG | 1 cut(s) | 636 |
| MaeIII | GTNAC | 1 cut(s) | 781 |
| MalI | GATC | 2 cut(s) | 592, 771 |
| MboI | GATC | 2 cut(s) | 590, 769 |
| MboII | GAAGA | 2 cut(s) | 326, 391 |
| MflI | RGATCY | 1 cut(s) | 769 |
| MhlI | GDGCHC | 1 cut(s) | 570 |
| MluCI | AATT | 7 cut(s) | 20, 264, 283, 402, 422, 446, 607 |
| MlyI | GAGTC | 2 cut(s) | 6, 550 |
| MmeI | TCCRAC | 1 cut(s) | 78 |
| MnlI | CCTC | 7 cut(s) | 178, 186, 478, 504, 597, 650, 673 |
| Mph1103I | ATGCAT | 1 cut(s) | 84 |
| MroXI | GAANNNNTTC | 1 cut(s) | 333 |
| MseI | TTAA | 3 cut(s) | 42, 108, 390 |
| MslI | CAYNNNNRTG | 2 cut(s) | 87, 720 |
| MspI | CCGG | 1 cut(s) | 642 |
| MspR9I | CCNGG | 1 cut(s) | 232 |
| Mva1269I | GAATGC | 1 cut(s) | 748 |
| MvaI | CCWGG | 1 cut(s) | 232 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 628 |
| NdeII | GATC | 2 cut(s) | 590, 769 |
| NlaIII | CATG | 3 cut(s) | 97, 200, 218 |
| NlaIV | GGNNCC | 3 cut(s) | 368, 567, 771 |
| NmuCI | GTSAC | 1 cut(s) | 781 |
| NsiI | ATGCAT | 1 cut(s) | 84 |
| NspI | RCATGY | 2 cut(s) | 97, 200 |
| PciI | ACATGT | 1 cut(s) | 93 |
| PctI | GAATGC | 1 cut(s) | 748 |
| PdmI | GAANNNNTTC | 1 cut(s) | 333 |
| PfeI | GAWTC | 3 cut(s) | 187, 346, 616 |
| PkrI | GCNGC | 3 cut(s) | 153, 670, 685 |
| PleI | GAGTC | 2 cut(s) | 6, 550 |
| PpsI | GAGTC | 2 cut(s) | 6, 550 |
| PscI | ACATGT | 1 cut(s) | 93 |
| Psp6I | CCWGG | 1 cut(s) | 230 |
| PspGI | CCWGG | 1 cut(s) | 230 |
| PspN4I | GGNNCC | 3 cut(s) | 368, 567, 771 |
| PspPI | GGNCC | 2 cut(s) | 161, 366 |
| PstNI | CAGNNNCTG | 1 cut(s) | 683 |
| PsuI | RGATCY | 1 cut(s) | 769 |
| RseI | CAYNNNNRTG | 2 cut(s) | 87, 720 |
| SaqAI | TTAA | 3 cut(s) | 42, 108, 390 |
| SatI | GCNGC | 3 cut(s) | 152, 669, 684 |
| Sau3AI | GATC | 2 cut(s) | 590, 769 |
| Sau96I | GGNCC | 2 cut(s) | 161, 366 |
| SchI | GAGTC | 2 cut(s) | 6, 550 |
| ScrFI | CCNGG | 1 cut(s) | 232 |
| SduI | GDGCHC | 1 cut(s) | 570 |
| SetI | ASST | 4 cut(s) | 159, 431, 445, 581 |
| SfaNI | GCATC | 3 cut(s) | 91, 225, 346 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 87, 720 |
| Sse9I | AATT | 7 cut(s) | 20, 264, 283, 402, 422, 446, 607 |
| SsiI | CCGC | 3 cut(s) | 38, 238, 767 |
| SspMI | CTAG | 1 cut(s) | 636 |
| StyD4I | CCNGG | 1 cut(s) | 230 |
| StyI | CCWWGG | 2 cut(s) | 119, 575 |
| TaaI | ACNGT | 4 cut(s) | 49, 147, 385, 500 |
| TaqI | TCGA | 1 cut(s) | 589 |
| TasI | AATT | 7 cut(s) | 20, 264, 283, 402, 422, 446, 607 |
| TfiI | GAWTC | 3 cut(s) | 187, 346, 616 |
| Tru1I | TTAA | 3 cut(s) | 42, 108, 390 |
| Tru9I | TTAA | 3 cut(s) | 42, 108, 390 |
| TscAI | CASTG | 3 cut(s) | 54, 544, 618 |
| TseFI | GTSAC | 1 cut(s) | 781 |
| TseI | GCWGC | 3 cut(s) | 151, 668, 683 |
| Tsp45I | GTSAC | 1 cut(s) | 781 |
| TspDTI | ATGAA | 4 cut(s) | 203, 414, 447, 741 |
| TspGWI | ACGGA | 2 cut(s) | 62, 260 |
| TspRI | CASTG | 3 cut(s) | 54, 544, 618 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 433 |
| XapI | RAATTY | 4 cut(s) | 20, 422, 446, 607 |
| XceI | RCATGY | 2 cut(s) | 97, 200 |
| XmnI | GAANNNNTTC | 1 cut(s) | 333 |
| XspI | CTAG | 1 cut(s) | 636 |
| Zsp2I | ATGCAT | 1 cut(s) | 84 |