Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 296 |
| AciI | CCGC | 5 cut(s) | 55, 237, 335, 378, 487 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 486 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 345 |
| AhlI | ACTAGT | 1 cut(s) | 440 |
| Alw21I | GWGCWC | 1 cut(s) | 511 |
| Alw26I | GTCTC | 3 cut(s) | 199, 481, 507 |
| Ama87I | CYCGRG | 2 cut(s) | 497, 504 |
| AoxI | GGCC | 2 cut(s) | 317, 493 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 101, 104 |
| AspA2I | CCTAGG | 1 cut(s) | 209 |
| AspS9I | GGNCC | 2 cut(s) | 317, 494 |
| AsuC2I | CCSGG | 1 cut(s) | 81 |
| AsuHPI | GGTGA | 1 cut(s) | 251 |
| AsuII | TTCGAA | 1 cut(s) | 28 |
| AvaI | CYCGRG | 2 cut(s) | 497, 504 |
| AvrII | CCTAGG | 1 cut(s) | 209 |
| BaeGI | GKGCMC | 1 cut(s) | 301 |
| BanI | GGYRCC | 1 cut(s) | 296 |
| BbsI | GAAGAC | 1 cut(s) | 12 |
| Bbv12I | GWGCWC | 1 cut(s) | 511 |
| BccI | CCATC | 4 cut(s) | 81, 227, 325, 338 |
| BceAI | ACGGC | 1 cut(s) | 121 |
| BcnI | CCSGG | 1 cut(s) | 81 |
| BcoDI | GTCTC | 3 cut(s) | 199, 481, 507 |
| BcuI | ACTAGT | 1 cut(s) | 440 |
| BfaI | CTAG | 2 cut(s) | 210, 441 |
| BisI | GCNGC | 1 cut(s) | 336 |
| BlnI | CCTAGG | 1 cut(s) | 209 |
| BlpI | GCTNAGC | 1 cut(s) | 374 |
| BlsI | GCNGC | 1 cut(s) | 337 |
| Bme1390I | CCNGG | 1 cut(s) | 81 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 345 |
| BmeT110I | CYCGRG | 2 cut(s) | 497, 504 |
| BmgT120I | GGNCC | 2 cut(s) | 317, 494 |
| BmiI | GGNNCC | 2 cut(s) | 298, 496 |
| BmrFI | CCNGG | 1 cut(s) | 81 |
| BmsI | GCATC | 1 cut(s) | 156 |
| BpiI | GAAGAC | 1 cut(s) | 12 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 374 |
| Bpu14I | TTCGAA | 1 cut(s) | 28 |
| BpuMI | CCSGG | 1 cut(s) | 81 |
| BsaI | GGTCTC | 2 cut(s) | 199, 481 |
| BsaJI | CCNNGG | 1 cut(s) | 209 |
| BsaWI | WCCGGW | 1 cut(s) | 435 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 486 |
| BseDI | CCNNGG | 1 cut(s) | 209 |
| BseGI | GGATG | 3 cut(s) | 52, 79, 349 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 486 |
| BseSI | GKGCMC | 1 cut(s) | 301 |
| BshFI | GGCC | 2 cut(s) | 319, 495 |
| BshNI | GGYRCC | 1 cut(s) | 296 |
| BsiHKAI | GWGCWC | 1 cut(s) | 511 |
| BsiHKCI | CYCGRG | 2 cut(s) | 497, 504 |
| BsiSI | CCGG | 3 cut(s) | 71, 80, 436 |
| BslFI | GGGAC | 1 cut(s) | 175 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 486 |
| BsmAI | GTCTC | 3 cut(s) | 199, 481, 507 |
| BsmFI | GGGAC | 1 cut(s) | 175 |
| BsnI | GGCC | 2 cut(s) | 319, 495 |
| Bso31I | GGTCTC | 2 cut(s) | 199, 481 |
| BsoBI | CYCGRG | 2 cut(s) | 497, 504 |
| Bsp119I | TTCGAA | 1 cut(s) | 28 |
| Bsp1286I | GDGCHC | 2 cut(s) | 301, 511 |
| Bsp143I | GATC | 2 cut(s) | 60, 312 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 374 |
| BspACI | CCGC | 5 cut(s) | 55, 237, 335, 378, 487 |
| BspANI | GGCC | 2 cut(s) | 319, 495 |
| BspHI | TCATGA | 1 cut(s) | 265 |
| BspLI | GGNNCC | 2 cut(s) | 298, 496 |
| BspT104I | TTCGAA | 1 cut(s) | 28 |
| BspT107I | GGYRCC | 1 cut(s) | 296 |
| BspTNI | GGTCTC | 2 cut(s) | 199, 481 |
| BssECI | CCNNGG | 1 cut(s) | 209 |
| BssMI | GATC | 2 cut(s) | 60, 312 |
| BssT1I | CCWWGG | 1 cut(s) | 209 |
| BstBI | TTCGAA | 1 cut(s) | 28 |
| BstC8I | GCNNGC | 1 cut(s) | 223 |
| BstDEI | CTNAG | 1 cut(s) | 374 |
| BstF5I | GGATG | 3 cut(s) | 52, 79, 349 |
| BstKTI | GATC | 2 cut(s) | 63, 315 |
| BstMAI | GTCTC | 3 cut(s) | 199, 481, 507 |
| BstMBI | GATC | 2 cut(s) | 60, 312 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 76, 335 |
| BstSCI | CCNGG | 1 cut(s) | 79 |
| BstSLI | GKGCMC | 1 cut(s) | 301 |
| BstV2I | GAAGAC | 1 cut(s) | 12 |
| BsuRI | GGCC | 2 cut(s) | 319, 495 |
| BtgZI | GCGATG | 1 cut(s) | 344 |
| BtsCI | GGATG | 3 cut(s) | 52, 79, 349 |
| BtsI | GCAGTG | 1 cut(s) | 509 |
| BtsIMutI | CAGTG | 1 cut(s) | 509 |
| Cac8I | GCNNGC | 1 cut(s) | 223 |
| CciI | TCATGA | 1 cut(s) | 265 |
| Cfr13I | GGNCC | 2 cut(s) | 317, 494 |
| CseI | GACGC | 2 cut(s) | 158, 214 |
| CviAII | CATG | 3 cut(s) | 266, 277, 302 |
| CviJI | RGCY | 7 cut(s) | 79, 94, 131, 136, 319, 367, 495 |
| CviKI_1 | RGCY | 7 cut(s) | 79, 94, 131, 136, 319, 367, 495 |
| DdeI | CTNAG | 1 cut(s) | 374 |
| DpnI | GATC | 2 cut(s) | 62, 314 |
| DpnII | GATC | 2 cut(s) | 60, 312 |
| DriI | GACNNNNNGTC | 1 cut(s) | 345 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 345 |
| Eco130I | CCWWGG | 1 cut(s) | 209 |
| Eco31I | GGTCTC | 2 cut(s) | 199, 481 |
| Eco88I | CYCGRG | 2 cut(s) | 497, 504 |
| EcoT14I | CCWWGG | 1 cut(s) | 209 |
| ErhI | CCWWGG | 1 cut(s) | 209 |
| FaeI | CATG | 3 cut(s) | 269, 280, 305 |
| FaiI | YATR | 6 cut(s) | 65, 267, 273, 278, 303, 423 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 89, 121 |
| FaqI | GGGAC | 1 cut(s) | 175 |
| FatI | CATG | 3 cut(s) | 265, 276, 301 |
| FauI | CCCGC | 2 cut(s) | 48, 480 |
| Fnu4HI | GCNGC | 1 cut(s) | 336 |
| FokI | GGATG | 3 cut(s) | 59, 86, 356 |
| Fsp4HI | GCNGC | 1 cut(s) | 336 |
| FspBI | CTAG | 2 cut(s) | 210, 441 |
| GluI | GCNGC | 1 cut(s) | 336 |
| HaeIII | GGCC | 2 cut(s) | 319, 495 |
| HapII | CCGG | 3 cut(s) | 71, 80, 436 |
| HgaI | GACGC | 2 cut(s) | 158, 214 |
| Hin1II | CATG | 3 cut(s) | 269, 280, 305 |
| HinfI | GANTC | 3 cut(s) | 11, 392, 500 |
| HpaII | CCGG | 3 cut(s) | 71, 80, 436 |
| HphI | GGTGA | 1 cut(s) | 251 |
| Hpy188III | TCNNGA | 3 cut(s) | 266, 350, 504 |
| Hpy99I | CGWCG | 1 cut(s) | 343 |
| HpyAV | CCTTC | 2 cut(s) | 187, 268 |
| HpyCH4V | TGCA | 1 cut(s) | 169 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 76, 335 |
| HpyF3I | CTNAG | 1 cut(s) | 374 |
| Hsp92II | CATG | 3 cut(s) | 269, 280, 305 |
| Kzo9I | GATC | 2 cut(s) | 60, 312 |
| LpnPI | CCDG | 3 cut(s) | 84, 93, 449 |
| LweI | GCATC | 1 cut(s) | 156 |
| MaeI | CTAG | 2 cut(s) | 210, 441 |
| MalI | GATC | 2 cut(s) | 62, 314 |
| MboI | GATC | 2 cut(s) | 60, 312 |
| MboII | GAAGA | 7 cut(s) | 17, 96, 97, 109, 199, 202, 441 |
| MhlI | GDGCHC | 2 cut(s) | 301, 511 |
| MluCI | AATT | 2 cut(s) | 31, 119 |
| MlyI | GAGTC | 1 cut(s) | 509 |
| MmeI | TCCRAC | 1 cut(s) | 504 |
| MnlI | CCTC | 5 cut(s) | 37, 43, 346, 419, 421 |
| MroXI | GAANNNNTTC | 2 cut(s) | 101, 104 |
| MseI | TTAA | 2 cut(s) | 125, 517 |
| MslI | CAYNNNNRTG | 1 cut(s) | 270 |
| MspI | CCGG | 3 cut(s) | 71, 80, 436 |
| MspR9I | CCNGG | 1 cut(s) | 81 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 76, 335 |
| NciI | CCSGG | 1 cut(s) | 81 |
| NdeII | GATC | 2 cut(s) | 60, 312 |
| NlaIII | CATG | 3 cut(s) | 269, 280, 305 |
| NlaIV | GGNNCC | 2 cut(s) | 298, 496 |
| NspV | TTCGAA | 1 cut(s) | 28 |
| PaeR7I | CTCGAG | 1 cut(s) | 504 |
| PagI | TCATGA | 1 cut(s) | 265 |
| PdmI | GAANNNNTTC | 2 cut(s) | 101, 104 |
| PfeI | GAWTC | 2 cut(s) | 11, 392 |
| PkrI | GCNGC | 1 cut(s) | 337 |
| PleI | GAGTC | 1 cut(s) | 508 |
| PpsI | GAGTC | 1 cut(s) | 508 |
| PspN4I | GGNNCC | 2 cut(s) | 298, 496 |
| PspPI | GGNCC | 2 cut(s) | 317, 494 |
| RseI | CAYNNNNRTG | 1 cut(s) | 270 |
| SaqAI | TTAA | 2 cut(s) | 125, 517 |
| SatI | GCNGC | 1 cut(s) | 336 |
| Sau3AI | GATC | 2 cut(s) | 60, 312 |
| Sau96I | GGNCC | 2 cut(s) | 317, 494 |
| SchI | GAGTC | 1 cut(s) | 509 |
| ScrFI | CCNGG | 1 cut(s) | 81 |
| SduI | GDGCHC | 2 cut(s) | 301, 511 |
| SetI | ASST | 4 cut(s) | 54, 198, 211, 413 |
| SfaNI | GCATC | 1 cut(s) | 156 |
| Sfr274I | CTCGAG | 1 cut(s) | 504 |
| SfuI | TTCGAA | 1 cut(s) | 28 |
| SlaI | CTCGAG | 1 cut(s) | 504 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 270 |
| SmlI | CTYRAG | 1 cut(s) | 504 |
| SmoI | CTYRAG | 1 cut(s) | 504 |
| SpeI | ACTAGT | 1 cut(s) | 440 |
| Sse9I | AATT | 2 cut(s) | 31, 119 |
| SsiI | CCGC | 5 cut(s) | 55, 237, 335, 378, 487 |
| SspMI | CTAG | 2 cut(s) | 210, 441 |
| StyD4I | CCNGG | 1 cut(s) | 79 |
| StyI | CCWWGG | 1 cut(s) | 209 |
| TaqI | TCGA | 3 cut(s) | 28, 114, 505 |
| TasI | AATT | 2 cut(s) | 31, 119 |
| TauI | GCSGC | 1 cut(s) | 338 |
| TfiI | GAWTC | 2 cut(s) | 11, 392 |
| Tru1I | TTAA | 2 cut(s) | 125, 517 |
| Tru9I | TTAA | 2 cut(s) | 125, 517 |
| TscAI | CASTG | 1 cut(s) | 516 |
| TspDTI | ATGAA | 3 cut(s) | 97, 282, 293 |
| TspGWI | ACGGA | 2 cut(s) | 356, 404 |
| TspRI | CASTG | 1 cut(s) | 516 |
| XhoI | CTCGAG | 1 cut(s) | 504 |
| XmaJI | CCTAGG | 1 cut(s) | 209 |
| XmnI | GAANNNNTTC | 2 cut(s) | 101, 104 |
| XspI | CTAG | 2 cut(s) | 210, 441 |