ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 31 - 104 | 8.7e-08 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 31, 160, 204, 268 |
| AcsI | RAATTY | 1 cut(s) | 361 |
| AcuI | CTGAAG | 1 cut(s) | 264 |
| AgsI | TTSAA | 2 cut(s) | 169, 339 |
| AjnI | CCWGG | 1 cut(s) | 278 |
| AluBI | AGCT | 1 cut(s) | 76 |
| AluI | AGCT | 1 cut(s) | 76 |
| Alw21I | GWGCWC | 1 cut(s) | 78 |
| AoxI | GGCC | 1 cut(s) | 249 |
| ApoI | RAATTY | 1 cut(s) | 361 |
| BanII | GRGCYC | 1 cut(s) | 78 |
| BauI | CACGAG | 1 cut(s) | 11 |
| Bbv12I | GWGCWC | 1 cut(s) | 78 |
| BccI | CCATC | 1 cut(s) | 209 |
| BciT130I | CCWGG | 1 cut(s) | 280 |
| BfaI | CTAG | 1 cut(s) | 367 |
| BglII | AGATCT | 1 cut(s) | 7 |
| Bme1390I | CCNGG | 1 cut(s) | 280 |
| BmrFI | CCNGG | 1 cut(s) | 280 |
| BmsI | GCATC | 1 cut(s) | 304 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 224, 256 |
| BsaJI | CCNNGG | 1 cut(s) | 278 |
| BseBI | CCWGG | 1 cut(s) | 280 |
| BseDI | CCNNGG | 1 cut(s) | 278 |
| BseGI | GGATG | 1 cut(s) | 220 |
| BseRI | GAGGAG | 1 cut(s) | 65 |
| BshFI | GGCC | 1 cut(s) | 251 |
| BsiHKAI | GWGCWC | 1 cut(s) | 78 |
| BsnI | GGCC | 1 cut(s) | 251 |
| Bsp1286I | GDGCHC | 1 cut(s) | 78 |
| Bsp143I | GATC | 1 cut(s) | 7 |
| BspACI | CCGC | 4 cut(s) | 31, 160, 204, 268 |
| BspANI | GGCC | 1 cut(s) | 251 |
| BssECI | CCNNGG | 1 cut(s) | 278 |
| BssMI | GATC | 1 cut(s) | 7 |
| BssSI | CACGAG | 1 cut(s) | 11 |
| Bst2BI | CACGAG | 1 cut(s) | 11 |
| Bst2UI | CCWGG | 1 cut(s) | 280 |
| Bst6I | CTCTTC | 1 cut(s) | 240 |
| BstF5I | GGATG | 1 cut(s) | 220 |
| BstKTI | GATC | 1 cut(s) | 10 |
| BstMBI | GATC | 1 cut(s) | 7 |
| BstNI | CCWGG | 1 cut(s) | 280 |
| BstSCI | CCNGG | 1 cut(s) | 278 |
| BstX2I | RGATCY | 1 cut(s) | 7 |
| BstYI | RGATCY | 1 cut(s) | 7 |
| BsuRI | GGCC | 1 cut(s) | 251 |
| BtsCI | GGATG | 1 cut(s) | 220 |
| BtsIMutI | CAGTG | 1 cut(s) | 42 |
| CviAII | CATG | 1 cut(s) | 259 |
| CviJI | RGCY | 4 cut(s) | 76, 122, 251, 311 |
| CviKI_1 | RGCY | 4 cut(s) | 76, 122, 251, 311 |
| DpnI | GATC | 1 cut(s) | 9 |
| DpnII | GATC | 1 cut(s) | 7 |
| Eam1104I | CTCTTC | 1 cut(s) | 240 |
| EarI | CTCTTC | 1 cut(s) | 240 |
| Ecl136II | GAGCTC | 1 cut(s) | 76 |
| Eco24I | GRGCYC | 1 cut(s) | 78 |
| Eco53kI | GAGCTC | 1 cut(s) | 76 |
| Eco57I | CTGAAG | 1 cut(s) | 264 |
| EcoICRI | GAGCTC | 1 cut(s) | 76 |
| EcoRII | CCWGG | 1 cut(s) | 278 |
| EcoT38I | GRGCYC | 1 cut(s) | 78 |
| FaeI | CATG | 1 cut(s) | 262 |
| FaiI | YATR | 5 cut(s) | 72, 142, 254, 260, 285 |
| FatI | CATG | 1 cut(s) | 258 |
| FauI | CCCGC | 1 cut(s) | 261 |
| FokI | GGATG | 1 cut(s) | 227 |
| FriOI | GRGCYC | 1 cut(s) | 78 |
| FspBI | CTAG | 1 cut(s) | 367 |
| HaeIII | GGCC | 1 cut(s) | 251 |
| Hin1II | CATG | 1 cut(s) | 262 |
| HinfI | GANTC | 1 cut(s) | 262 |
| Hpy188I | TCNGA | 4 cut(s) | 101, 195, 244, 358 |
| HpyAV | CCTTC | 1 cut(s) | 116 |
| HpyCH4V | TGCA | 2 cut(s) | 38, 317 |
| Hsp92II | CATG | 1 cut(s) | 262 |
| Kzo9I | GATC | 1 cut(s) | 7 |
| LpnPI | CCDG | 2 cut(s) | 265, 292 |
| LweI | GCATC | 1 cut(s) | 304 |
| MaeI | CTAG | 1 cut(s) | 367 |
| MalI | GATC | 1 cut(s) | 9 |
| MboI | GATC | 1 cut(s) | 7 |
| MboII | GAAGA | 3 cut(s) | 17, 231, 257 |
| MflI | RGATCY | 1 cut(s) | 7 |
| MhlI | GDGCHC | 1 cut(s) | 78 |
| MluCI | AATT | 4 cut(s) | 170, 292, 339, 361 |
| MnlI | CCTC | 5 cut(s) | 43, 226, 241, 250, 342 |
| MslI | CAYNNNNRTG | 1 cut(s) | 257 |
| MspR9I | CCNGG | 1 cut(s) | 280 |
| MvaI | CCWGG | 1 cut(s) | 280 |
| NdeII | GATC | 1 cut(s) | 7 |
| NlaIII | CATG | 1 cut(s) | 262 |
| PfeI | GAWTC | 1 cut(s) | 262 |
| Psp124BI | GAGCTC | 1 cut(s) | 78 |
| Psp6I | CCWGG | 1 cut(s) | 278 |
| PspGI | CCWGG | 1 cut(s) | 278 |
| PsuI | RGATCY | 1 cut(s) | 7 |
| RseI | CAYNNNNRTG | 1 cut(s) | 257 |
| SacI | GAGCTC | 1 cut(s) | 78 |
| Sau3AI | GATC | 1 cut(s) | 7 |
| ScrFI | CCNGG | 1 cut(s) | 280 |
| SduI | GDGCHC | 1 cut(s) | 78 |
| SetI | ASST | 4 cut(s) | 78, 108, 237, 328 |
| SfaNI | GCATC | 1 cut(s) | 304 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 257 |
| Sse9I | AATT | 4 cut(s) | 170, 292, 339, 361 |
| SsiI | CCGC | 4 cut(s) | 31, 160, 204, 268 |
| SspMI | CTAG | 1 cut(s) | 367 |
| SstI | GAGCTC | 1 cut(s) | 78 |
| StyD4I | CCNGG | 1 cut(s) | 278 |
| TaqI | TCGA | 1 cut(s) | 231 |
| TasI | AATT | 4 cut(s) | 170, 292, 339, 361 |
| TfiI | GAWTC | 1 cut(s) | 262 |
| TscAI | CASTG | 1 cut(s) | 49 |
| TspRI | CASTG | 1 cut(s) | 49 |
| XapI | RAATTY | 1 cut(s) | 361 |
| XspI | CTAG | 1 cut(s) | 367 |