Pseudouridine synthase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 187 |
| AciI | CCGC | 2 cut(s) | 36, 255 |
| AcoI | YGGCCR | 1 cut(s) | 178 |
| AcuI | CTGAAG | 2 cut(s) | 255, 362 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 187 |
| AgsI | TTSAA | 2 cut(s) | 47, 408 |
| AjnI | CCWGG | 1 cut(s) | 69 |
| AluBI | AGCT | 2 cut(s) | 91, 425 |
| AluI | AGCT | 2 cut(s) | 91, 425 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 233 |
| AoxI | GGCC | 1 cut(s) | 178 |
| ApeKI | GCWGC | 1 cut(s) | 107 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 342 |
| AspS9I | GGNCC | 1 cut(s) | 22 |
| AsuHPI | GGTGA | 1 cut(s) | 155 |
| AvaII | GGWCC | 1 cut(s) | 22 |
| BalI | TGGCCA | 1 cut(s) | 180 |
| BbsI | GAAGAC | 1 cut(s) | 342 |
| BbvI | GCAGC | 1 cut(s) | 94 |
| BccI | CCATC | 1 cut(s) | 251 |
| BciT130I | CCWGG | 1 cut(s) | 71 |
| BisI | GCNGC | 1 cut(s) | 108 |
| BlsI | GCNGC | 1 cut(s) | 109 |
| Bme1390I | CCNGG | 1 cut(s) | 71 |
| Bme18I | GGWCC | 1 cut(s) | 22 |
| BmgT120I | GGNCC | 1 cut(s) | 22 |
| BmrFI | CCNGG | 1 cut(s) | 71 |
| BpiI | GAAGAC | 1 cut(s) | 342 |
| BsaBI | GATNNNNATC | 1 cut(s) | 131 |
| BsaJI | CCNNGG | 3 cut(s) | 18, 175, 264 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 187 |
| Bse8I | GATNNNNATC | 1 cut(s) | 131 |
| BseBI | CCWGG | 1 cut(s) | 71 |
| BseDI | CCNNGG | 3 cut(s) | 18, 175, 264 |
| BseGI | GGATG | 1 cut(s) | 319 |
| BseJI | GATNNNNATC | 1 cut(s) | 131 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 187 |
| BseRI | GAGGAG | 1 cut(s) | 231 |
| BseXI | GCAGC | 1 cut(s) | 94 |
| BshFI | GGCC | 1 cut(s) | 180 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 187 |
| BsnI | GGCC | 1 cut(s) | 180 |
| Bsp143I | GATC | 1 cut(s) | 126 |
| BspACI | CCGC | 2 cut(s) | 36, 255 |
| BspANI | GGCC | 1 cut(s) | 180 |
| BssECI | CCNNGG | 3 cut(s) | 18, 175, 264 |
| BssMI | GATC | 1 cut(s) | 126 |
| BssT1I | CCWWGG | 3 cut(s) | 18, 175, 264 |
| Bst2UI | CCWGG | 1 cut(s) | 71 |
| Bst4CI | ACNGT | 1 cut(s) | 79 |
| BstC8I | GCNNGC | 1 cut(s) | 93 |
| BstEII | GGTNACC | 1 cut(s) | 73 |
| BstF5I | GGATG | 1 cut(s) | 319 |
| BstKTI | GATC | 1 cut(s) | 129 |
| BstMBI | GATC | 1 cut(s) | 126 |
| BstNI | CCWGG | 1 cut(s) | 71 |
| BstPI | GGTNACC | 1 cut(s) | 73 |
| BstSCI | CCNGG | 1 cut(s) | 69 |
| BstV1I | GCAGC | 1 cut(s) | 94 |
| BstV2I | GAAGAC | 1 cut(s) | 342 |
| BsuRI | GGCC | 1 cut(s) | 180 |
| BtsCI | GGATG | 1 cut(s) | 319 |
| Cac8I | GCNNGC | 1 cut(s) | 93 |
| CaiI | CAGNNNCTG | 1 cut(s) | 233 |
| Cfr13I | GGNCC | 1 cut(s) | 22 |
| CviJI | RGCY | 6 cut(s) | 17, 91, 107, 180, 251, 425 |
| CviKI_1 | RGCY | 6 cut(s) | 17, 91, 107, 180, 251, 425 |
| DpnI | GATC | 1 cut(s) | 128 |
| DpnII | GATC | 1 cut(s) | 126 |
| EaeI | YGGCCR | 1 cut(s) | 178 |
| Eco130I | CCWWGG | 3 cut(s) | 18, 175, 264 |
| Eco47I | GGWCC | 1 cut(s) | 22 |
| Eco57I | CTGAAG | 2 cut(s) | 255, 362 |
| Eco91I | GGTNACC | 1 cut(s) | 73 |
| EcoO109I | RGGNCCY | 1 cut(s) | 22 |
| EcoO65I | GGTNACC | 1 cut(s) | 73 |
| EcoRII | CCWGG | 1 cut(s) | 69 |
| EcoT14I | CCWWGG | 3 cut(s) | 18, 175, 264 |
| ErhI | CCWWGG | 3 cut(s) | 18, 175, 264 |
| FaiI | YATR | 4 cut(s) | 14, 156, 362, 392 |
| FauI | CCCGC | 1 cut(s) | 29 |
| Fnu4HI | GCNGC | 1 cut(s) | 108 |
| FokI | GGATG | 1 cut(s) | 326 |
| Fsp4HI | GCNGC | 1 cut(s) | 108 |
| GluI | GCNGC | 1 cut(s) | 108 |
| HaeIII | GGCC | 1 cut(s) | 180 |
| HindIII | AAGCTT | 2 cut(s) | 89, 423 |
| HinfI | GANTC | 2 cut(s) | 230, 369 |
| HphI | GGTGA | 1 cut(s) | 155 |
| Hpy166II | GTNNAC | 2 cut(s) | 201, 299 |
| Hpy188I | TCNGA | 1 cut(s) | 235 |
| Hpy8I | GTNNAC | 2 cut(s) | 201, 299 |
| HpyAV | CCTTC | 1 cut(s) | 158 |
| HpyCH4III | ACNGT | 1 cut(s) | 79 |
| HpyCH4V | TGCA | 2 cut(s) | 95, 227 |
| Kzo9I | GATC | 1 cut(s) | 126 |
| LpnPI | CCDG | 4 cut(s) | 56, 83, 260, 345 |
| Lsp1109I | GCAGC | 1 cut(s) | 94 |
| MaeIII | GTNAC | 3 cut(s) | 73, 143, 157 |
| MalI | GATC | 1 cut(s) | 128 |
| MboI | GATC | 1 cut(s) | 126 |
| MboII | GAAGA | 3 cut(s) | 248, 342, 368 |
| MlsI | TGGCCA | 1 cut(s) | 180 |
| MluCI | AATT | 3 cut(s) | 101, 204, 338 |
| MluNI | TGGCCA | 1 cut(s) | 180 |
| MlyI | GAGTC | 1 cut(s) | 378 |
| MnlI | CCTC | 3 cut(s) | 209, 262, 304 |
| Mox20I | TGGCCA | 1 cut(s) | 180 |
| MroXI | GAANNNNTTC | 1 cut(s) | 342 |
| MscI | TGGCCA | 1 cut(s) | 180 |
| MseI | TTAA | 5 cut(s) | 84, 114, 285, 383, 427 |
| Msp20I | TGGCCA | 1 cut(s) | 180 |
| MspR9I | CCNGG | 1 cut(s) | 71 |
| MvaI | CCWGG | 1 cut(s) | 71 |
| NdeII | GATC | 1 cut(s) | 126 |
| NmuCI | GTSAC | 2 cut(s) | 143, 157 |
| PdmI | GAANNNNTTC | 1 cut(s) | 342 |
| PfeI | GAWTC | 1 cut(s) | 230 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 187 |
| PkrI | GCNGC | 1 cut(s) | 109 |
| PleI | GAGTC | 1 cut(s) | 377 |
| PpsI | GAGTC | 1 cut(s) | 377 |
| PpuMI | RGGWCCY | 1 cut(s) | 22 |
| Psp5II | RGGWCCY | 1 cut(s) | 22 |
| Psp6I | CCWGG | 1 cut(s) | 69 |
| PspEI | GGTNACC | 1 cut(s) | 73 |
| PspGI | CCWGG | 1 cut(s) | 69 |
| PspPI | GGNCC | 1 cut(s) | 22 |
| PspPPI | RGGWCCY | 1 cut(s) | 22 |
| PstNI | CAGNNNCTG | 1 cut(s) | 233 |
| SaqAI | TTAA | 5 cut(s) | 84, 114, 285, 383, 427 |
| SatI | GCNGC | 1 cut(s) | 108 |
| Sau3AI | GATC | 1 cut(s) | 126 |
| Sau96I | GGNCC | 1 cut(s) | 22 |
| SchI | GAGTC | 1 cut(s) | 378 |
| ScrFI | CCNGG | 1 cut(s) | 71 |
| SetI | ASST | 6 cut(s) | 24, 75, 93, 125, 145, 427 |
| SinI | GGWCC | 1 cut(s) | 22 |
| Sse9I | AATT | 3 cut(s) | 101, 204, 338 |
| SsiI | CCGC | 2 cut(s) | 36, 255 |
| StyD4I | CCNGG | 1 cut(s) | 69 |
| StyI | CCWWGG | 3 cut(s) | 18, 175, 264 |
| TaaI | ACNGT | 1 cut(s) | 79 |
| TasI | AATT | 3 cut(s) | 101, 204, 338 |
| TfiI | GAWTC | 1 cut(s) | 230 |
| Tru1I | TTAA | 5 cut(s) | 84, 114, 285, 383, 427 |
| Tru9I | TTAA | 5 cut(s) | 84, 114, 285, 383, 427 |
| TseFI | GTSAC | 2 cut(s) | 143, 157 |
| TseI | GCWGC | 1 cut(s) | 107 |
| Tsp45I | GTSAC | 2 cut(s) | 143, 157 |
| TspDTI | ATGAA | 2 cut(s) | 41, 349 |
| TspGWI | ACGGA | 1 cut(s) | 381 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 187 |
| VpaK11BI | GGWCC | 1 cut(s) | 22 |
| XmnI | GAANNNNTTC | 1 cut(s) | 342 |