Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 97 - 134 | 7.8e-06 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 475 |
| AccI | GTMKAC | 1 cut(s) | 184 |
| AccII | CGCG | 1 cut(s) | 351 |
| AccIII | TCCGGA | 1 cut(s) | 136 |
| AciI | CCGC | 5 cut(s) | 16, 81, 287, 437, 496 |
| AclI | AACGTT | 1 cut(s) | 230 |
| AclWI | GGATC | 3 cut(s) | 7, 15, 55 |
| AdeI | CACNNNGTG | 1 cut(s) | 24 |
| AfaI | GTAC | 1 cut(s) | 374 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 214, 475 |
| AgsI | TTSAA | 2 cut(s) | 235, 379 |
| AjnI | CCWGG | 2 cut(s) | 145, 368 |
| Alw21I | GWGCWC | 1 cut(s) | 105 |
| Alw26I | GTCTC | 2 cut(s) | 390, 466 |
| AlwI | GGATC | 3 cut(s) | 7, 15, 55 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 475 |
| Aor13HI | TCCGGA | 1 cut(s) | 136 |
| AoxI | GGCC | 1 cut(s) | 237 |
| ApeKI | GCWGC | 1 cut(s) | 401 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 167 |
| AspS9I | GGNCC | 1 cut(s) | 238 |
| AsuHPI | GGTGA | 1 cut(s) | 278 |
| Bbv12I | GWGCWC | 1 cut(s) | 105 |
| BbvI | GCAGC | 1 cut(s) | 388 |
| BccI | CCATC | 3 cut(s) | 147, 293, 404 |
| BciT130I | CCWGG | 2 cut(s) | 147, 370 |
| BcoDI | GTCTC | 2 cut(s) | 390, 466 |
| BfaI | CTAG | 2 cut(s) | 276, 405 |
| BglII | AGATCT | 1 cut(s) | 421 |
| BisI | GCNGC | 2 cut(s) | 82, 402 |
| BlsI | GCNGC | 2 cut(s) | 83, 403 |
| Bme1390I | CCNGG | 2 cut(s) | 147, 370 |
| BmgT120I | GGNCC | 1 cut(s) | 238 |
| BmiI | GGNNCC | 1 cut(s) | 467 |
| BmrFI | CCNGG | 2 cut(s) | 147, 370 |
| BmrI | ACTGGG | 1 cut(s) | 86 |
| BmuI | ACTGGG | 1 cut(s) | 86 |
| BsaBI | GATNNNNATC | 1 cut(s) | 345 |
| BsaJI | CCNNGG | 1 cut(s) | 368 |
| BsaWI | WCCGGW | 2 cut(s) | 44, 136 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 214, 475 |
| Bse1I | ACTGG | 2 cut(s) | 81, 480 |
| Bse8I | GATNNNNATC | 1 cut(s) | 345 |
| BseAI | TCCGGA | 1 cut(s) | 136 |
| BseBI | CCWGG | 2 cut(s) | 147, 370 |
| BseDI | CCNNGG | 1 cut(s) | 368 |
| BseGI | GGATG | 3 cut(s) | 145, 304, 308 |
| BseJI | GATNNNNATC | 1 cut(s) | 345 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 214, 475 |
| BseNI | ACTGG | 2 cut(s) | 81, 480 |
| BseRI | GAGGAG | 2 cut(s) | 125, 128 |
| BseXI | GCAGC | 1 cut(s) | 388 |
| Bsh1236I | CGCG | 1 cut(s) | 351 |
| Bsh1285I | CGRYCG | 1 cut(s) | 45 |
| BshFI | GGCC | 1 cut(s) | 239 |
| BsiEI | CGRYCG | 1 cut(s) | 45 |
| BsiHKAI | GWGCWC | 1 cut(s) | 105 |
| BsiSI | CCGG | 2 cut(s) | 45, 137 |
| BslFI | GGGAC | 2 cut(s) | 351, 427 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 214, 475 |
| BsmAI | GTCTC | 2 cut(s) | 390, 466 |
| BsmFI | GGGAC | 2 cut(s) | 351, 427 |
| BsmI | GAATGC | 1 cut(s) | 498 |
| BsnI | GGCC | 1 cut(s) | 239 |
| Bsp1286I | GDGCHC | 1 cut(s) | 105 |
| Bsp13I | TCCGGA | 1 cut(s) | 136 |
| Bsp143I | GATC | 6 cut(s) | 7, 12, 47, 126, 340, 421 |
| BspACI | CCGC | 5 cut(s) | 16, 81, 287, 437, 496 |
| BspANI | GGCC | 1 cut(s) | 239 |
| BspEI | TCCGGA | 1 cut(s) | 136 |
| BspFNI | CGCG | 1 cut(s) | 351 |
| BspLI | GGNNCC | 1 cut(s) | 467 |
| BspPI | GGATC | 3 cut(s) | 7, 15, 55 |
| BsrI | ACTGG | 2 cut(s) | 81, 480 |
| BssECI | CCNNGG | 1 cut(s) | 368 |
| BssMI | GATC | 6 cut(s) | 7, 12, 47, 126, 340, 421 |
| Bst2UI | CCWGG | 2 cut(s) | 147, 370 |
| Bst4CI | ACNGT | 2 cut(s) | 36, 189 |
| BstF5I | GGATG | 3 cut(s) | 145, 304, 308 |
| BstFNI | CGCG | 1 cut(s) | 351 |
| BstKTI | GATC | 6 cut(s) | 10, 15, 50, 129, 343, 424 |
| BstMAI | GTCTC | 2 cut(s) | 390, 466 |
| BstMBI | GATC | 6 cut(s) | 7, 12, 47, 126, 340, 421 |
| BstMCI | CGRYCG | 1 cut(s) | 45 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 401, 445 |
| BstNI | CCWGG | 2 cut(s) | 147, 370 |
| BstNSI | RCATGY | 1 cut(s) | 263 |
| BstSCI | CCNGG | 2 cut(s) | 145, 368 |
| BstUI | CGCG | 1 cut(s) | 351 |
| BstV1I | GCAGC | 1 cut(s) | 388 |
| BstX2I | RGATCY | 3 cut(s) | 7, 47, 421 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 153 |
| BstYI | RGATCY | 3 cut(s) | 7, 47, 421 |
| BsuRI | GGCC | 1 cut(s) | 239 |
| BtsCI | GGATG | 3 cut(s) | 145, 304, 308 |
| CaiI | CAGNNNCTG | 1 cut(s) | 475 |
| Cfr13I | GGNCC | 1 cut(s) | 238 |
| Csp6I | GTAC | 1 cut(s) | 373 |
| CviAII | CATG | 2 cut(s) | 260, 332 |
| CviJI | RGCY | 7 cut(s) | 31, 84, 97, 239, 275, 401, 468 |
| CviKI_1 | RGCY | 7 cut(s) | 31, 84, 97, 239, 275, 401, 468 |
| CviQI | GTAC | 1 cut(s) | 373 |
| DpnI | GATC | 6 cut(s) | 9, 14, 49, 128, 342, 423 |
| DpnII | GATC | 6 cut(s) | 7, 12, 47, 126, 340, 421 |
| DraIII | CACNNNGTG | 1 cut(s) | 24 |
| EcoO109I | RGGNCCY | 1 cut(s) | 238 |
| EcoRII | CCWGG | 2 cut(s) | 145, 368 |
| FaeI | CATG | 2 cut(s) | 263, 335 |
| FaiI | YATR | 8 cut(s) | 224, 261, 333, 339, 434, 446, 461, 463 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 374, 406 |
| FaqI | GGGAC | 2 cut(s) | 351, 427 |
| FatI | CATG | 2 cut(s) | 259, 331 |
| FblI | GTMKAC | 1 cut(s) | 184 |
| Fnu4HI | GCNGC | 2 cut(s) | 82, 402 |
| FokI | GGATG | 3 cut(s) | 152, 311, 315 |
| Fsp4HI | GCNGC | 2 cut(s) | 82, 402 |
| FspBI | CTAG | 2 cut(s) | 276, 405 |
| GluI | GCNGC | 2 cut(s) | 82, 402 |
| HaeIII | GGCC | 1 cut(s) | 239 |
| HapII | CCGG | 2 cut(s) | 45, 137 |
| Hin1II | CATG | 2 cut(s) | 263, 335 |
| HincII | GTYRAC | 1 cut(s) | 192 |
| HindII | GTYRAC | 1 cut(s) | 192 |
| HinfI | GANTC | 2 cut(s) | 247, 364 |
| HpaII | CCGG | 2 cut(s) | 45, 137 |
| HphI | GGTGA | 1 cut(s) | 278 |
| Hpy166II | GTNNAC | 2 cut(s) | 185, 192 |
| Hpy188I | TCNGA | 2 cut(s) | 12, 109 |
| Hpy188III | TCNNGA | 4 cut(s) | 137, 172, 244, 489 |
| Hpy8I | GTNNAC | 2 cut(s) | 185, 192 |
| HpyAV | CCTTC | 3 cut(s) | 205, 229, 249 |
| HpyCH4III | ACNGT | 2 cut(s) | 36, 189 |
| HpyCH4IV | ACGT | 1 cut(s) | 230 |
| HpyCH4V | TGCA | 1 cut(s) | 448 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 401, 445 |
| HpySE526I | ACGT | 1 cut(s) | 230 |
| Hsp92II | CATG | 2 cut(s) | 263, 335 |
| Kpn2I | TCCGGA | 1 cut(s) | 136 |
| Kzo9I | GATC | 6 cut(s) | 7, 12, 47, 126, 340, 421 |
| LmnI | GCTCC | 1 cut(s) | 465 |
| Lsp1109I | GCAGC | 1 cut(s) | 388 |
| MaeI | CTAG | 2 cut(s) | 276, 405 |
| MaeII | ACGT | 1 cut(s) | 230 |
| MalI | GATC | 6 cut(s) | 9, 14, 49, 128, 342, 423 |
| MboI | GATC | 6 cut(s) | 7, 12, 47, 126, 340, 421 |
| MboII | GAAGA | 3 cut(s) | 83, 175, 431 |
| MflI | RGATCY | 3 cut(s) | 7, 47, 421 |
| MhlI | GDGCHC | 1 cut(s) | 105 |
| MluCI | AATT | 1 cut(s) | 505 |
| MlyI | GAGTC | 2 cut(s) | 241, 373 |
| MmeI | TCCRAC | 1 cut(s) | 276 |
| MnlI | CCTC | 8 cut(s) | 21, 61, 87, 103, 106, 109, 208, 251 |
| MroI | TCCGGA | 1 cut(s) | 136 |
| MroXI | GAANNNNTTC | 1 cut(s) | 167 |
| MseI | TTAA | 1 cut(s) | 441 |
| MslI | CAYNNNNRTG | 2 cut(s) | 264, 336 |
| MspI | CCGG | 2 cut(s) | 45, 137 |
| MspR9I | CCNGG | 2 cut(s) | 147, 370 |
| Mva1269I | GAATGC | 1 cut(s) | 498 |
| MvaI | CCWGG | 2 cut(s) | 147, 370 |
| MvnI | CGCG | 1 cut(s) | 351 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 401, 445 |
| NdeII | GATC | 6 cut(s) | 7, 12, 47, 126, 340, 421 |
| NlaIII | CATG | 2 cut(s) | 263, 335 |
| NlaIV | GGNNCC | 1 cut(s) | 467 |
| NspI | RCATGY | 1 cut(s) | 263 |
| PctI | GAATGC | 1 cut(s) | 498 |
| PdmI | GAANNNNTTC | 1 cut(s) | 167 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 475 |
| PkrI | GCNGC | 2 cut(s) | 83, 403 |
| PleI | GAGTC | 2 cut(s) | 241, 372 |
| PpsI | GAGTC | 2 cut(s) | 241, 372 |
| Psp1406I | AACGTT | 1 cut(s) | 230 |
| Psp6I | CCWGG | 2 cut(s) | 145, 368 |
| PspGI | CCWGG | 2 cut(s) | 145, 368 |
| PspN4I | GGNNCC | 1 cut(s) | 467 |
| PspPI | GGNCC | 1 cut(s) | 238 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 188, 220 |
| PstNI | CAGNNNCTG | 1 cut(s) | 475 |
| PsuI | RGATCY | 3 cut(s) | 7, 47, 421 |
| RsaI | GTAC | 1 cut(s) | 374 |
| RsaNI | GTAC | 1 cut(s) | 373 |
| RseI | CAYNNNNRTG | 2 cut(s) | 264, 336 |
| SaqAI | TTAA | 1 cut(s) | 441 |
| SatI | GCNGC | 2 cut(s) | 82, 402 |
| Sau3AI | GATC | 6 cut(s) | 7, 12, 47, 126, 340, 421 |
| Sau96I | GGNCC | 1 cut(s) | 238 |
| SchI | GAGTC | 2 cut(s) | 241, 373 |
| ScrFI | CCNGG | 2 cut(s) | 147, 370 |
| SduI | GDGCHC | 1 cut(s) | 105 |
| SetI | ASST | 1 cut(s) | 233 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 264, 336 |
| Sse9I | AATT | 1 cut(s) | 505 |
| SsiI | CCGC | 5 cut(s) | 16, 81, 287, 437, 496 |
| SspMI | CTAG | 2 cut(s) | 276, 405 |
| StyD4I | CCNGG | 2 cut(s) | 145, 368 |
| TaaI | ACNGT | 2 cut(s) | 36, 189 |
| TaiI | ACGT | 1 cut(s) | 233 |
| TaqI | TCGA | 1 cut(s) | 41 |
| TasI | AATT | 1 cut(s) | 505 |
| TauI | GCSGC | 1 cut(s) | 84 |
| Tru1I | TTAA | 1 cut(s) | 441 |
| Tru9I | TTAA | 1 cut(s) | 441 |
| TseI | GCWGC | 1 cut(s) | 401 |
| TspDTI | ATGAA | 2 cut(s) | 156, 348 |
| TspGWI | ACGGA | 1 cut(s) | 431 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 475 |
| XceI | RCATGY | 1 cut(s) | 263 |
| XmiI | GTMKAC | 1 cut(s) | 184 |
| XmnI | GAANNNNTTC | 1 cut(s) | 167 |
| XspI | CTAG | 2 cut(s) | 276, 405 |