Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 37 - 108 | 1e-10 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 8 cut(s) | 74, 335, 348, 461, 474, 527, 540, 560 |
| AcsI | RAATTY | 1 cut(s) | 962 |
| AcuI | CTGAAG | 1 cut(s) | 273 |
| AfaI | GTAC | 2 cut(s) | 936, 979 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 329 |
| AflII | CTTAAG | 1 cut(s) | 502 |
| AgeI | ACCGGT | 1 cut(s) | 400 |
| AgsI | TTSAA | 2 cut(s) | 130, 1000 |
| AjnI | CCWGG | 2 cut(s) | 42, 57 |
| AluBI | AGCT | 7 cut(s) | 98, 520, 594, 754, 877, 994, 1038 |
| AluI | AGCT | 7 cut(s) | 98, 520, 594, 754, 877, 994, 1038 |
| Alw21I | GWGCWC | 2 cut(s) | 522, 931 |
| Alw26I | GTCTC | 1 cut(s) | 547 |
| AlwI | GGATC | 8 cut(s) | 74, 335, 348, 461, 474, 527, 540, 560 |
| AoxI | GGCC | 1 cut(s) | 791 |
| ApeKI | GCWGC | 2 cut(s) | 889, 1035 |
| ApoI | RAATTY | 1 cut(s) | 962 |
| AsiGI | ACCGGT | 1 cut(s) | 400 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 995 |
| AspLEI | GCGC | 2 cut(s) | 870, 975 |
| AspS9I | GGNCC | 1 cut(s) | 791 |
| AsuC2I | CCSGG | 1 cut(s) | 345 |
| AsuHPI | GGTGA | 1 cut(s) | 76 |
| BamHI | GGATCC | 3 cut(s) | 340, 466, 532 |
| BanII | GRGCYC | 1 cut(s) | 522 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 650, 682 |
| BauI | CACGAG | 1 cut(s) | 113 |
| Bbv12I | GWGCWC | 2 cut(s) | 522, 931 |
| BbvI | GCAGC | 1 cut(s) | 901 |
| BccI | CCATC | 5 cut(s) | 323, 479, 605, 636, 902 |
| BceAI | ACGGC | 2 cut(s) | 67, 855 |
| BciT130I | CCWGG | 2 cut(s) | 44, 59 |
| BcnI | CCSGG | 1 cut(s) | 345 |
| BcoDI | GTCTC | 1 cut(s) | 547 |
| BfaI | CTAG | 1 cut(s) | 1039 |
| BfmI | CTRYAG | 2 cut(s) | 324, 557 |
| BfoI | RGCGCY | 1 cut(s) | 871 |
| BfrI | CTTAAG | 1 cut(s) | 502 |
| BglII | AGATCT | 2 cut(s) | 177, 618 |
| BisI | GCNGC | 2 cut(s) | 890, 1036 |
| BlpI | GCTNAGC | 1 cut(s) | 99 |
| BlsI | GCNGC | 2 cut(s) | 891, 1037 |
| BmcAI | AGTACT | 1 cut(s) | 979 |
| Bme1390I | CCNGG | 3 cut(s) | 44, 59, 345 |
| BmgT120I | GGNCC | 1 cut(s) | 791 |
| BmiI | GGNNCC | 4 cut(s) | 321, 342, 468, 534 |
| BmrFI | CCNGG | 3 cut(s) | 44, 59, 345 |
| BmrI | ACTGGG | 1 cut(s) | 774 |
| BmsI | GCATC | 2 cut(s) | 174, 565 |
| BmuI | ACTGGG | 1 cut(s) | 774 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 185, 217, 504, 536 |
| BpmI | CTGGAG | 2 cut(s) | 80, 915 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 99 |
| BpuEI | CTTGAG | 1 cut(s) | 770 |
| BpuMI | CCSGG | 1 cut(s) | 345 |
| BsaJI | CCNNGG | 3 cut(s) | 287, 731, 775 |
| BsaWI | WCCGGW | 1 cut(s) | 400 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 429, 459, 813, 843 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 329 |
| Bse118I | RCCGGY | 2 cut(s) | 400, 1006 |
| Bse1I | ACTGG | 4 cut(s) | 363, 688, 769, 932 |
| BseBI | CCWGG | 2 cut(s) | 44, 59 |
| BseDI | CCNNGG | 3 cut(s) | 287, 731, 775 |
| BseGI | GGATG | 5 cut(s) | 52, 339, 490, 580, 846 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 329 |
| BseMII | CTCAG | 4 cut(s) | 90, 575, 892, 906 |
| BseNI | ACTGG | 4 cut(s) | 363, 688, 769, 932 |
| BseRI | GAGGAG | 1 cut(s) | 641 |
| BseXI | GCAGC | 1 cut(s) | 901 |
| BshFI | GGCC | 1 cut(s) | 793 |
| BshTI | ACCGGT | 1 cut(s) | 400 |
| BsiHKAI | GWGCWC | 2 cut(s) | 522, 931 |
| BsiSI | CCGG | 3 cut(s) | 344, 401, 1007 |
| BslFI | GGGAC | 1 cut(s) | 438 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 329 |
| BsmAI | GTCTC | 1 cut(s) | 547 |
| BsmFI | GGGAC | 1 cut(s) | 438 |
| BsnI | GGCC | 1 cut(s) | 793 |
| Bsp1286I | GDGCHC | 2 cut(s) | 522, 931 |
| Bsp143I | GATC | 9 cut(s) | 79, 177, 204, 340, 466, 532, 565, 618, 701 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 99 |
| Bsp19I | CCATGG | 1 cut(s) | 731 |
| BspANI | GGCC | 1 cut(s) | 793 |
| BspCNI | CTCAG | 4 cut(s) | 91, 576, 891, 907 |
| BspLI | GGNNCC | 4 cut(s) | 321, 342, 468, 534 |
| BspMAI | CTGCAG | 1 cut(s) | 561 |
| BspPI | GGATC | 8 cut(s) | 74, 335, 348, 461, 474, 527, 540, 560 |
| BspTI | CTTAAG | 1 cut(s) | 502 |
| BsrFI | RCCGGY | 2 cut(s) | 400, 1006 |
| BsrI | ACTGG | 4 cut(s) | 363, 688, 769, 932 |
| BssAI | RCCGGY | 2 cut(s) | 400, 1006 |
| BssECI | CCNNGG | 3 cut(s) | 287, 731, 775 |
| BssMI | GATC | 9 cut(s) | 79, 177, 204, 340, 466, 532, 565, 618, 701 |
| BssSI | CACGAG | 1 cut(s) | 113 |
| BssT1I | CCWWGG | 2 cut(s) | 287, 731 |
| Bst2BI | CACGAG | 1 cut(s) | 113 |
| Bst2UI | CCWGG | 2 cut(s) | 44, 59 |
| Bst4CI | ACNGT | 1 cut(s) | 73 |
| BstAFI | CTTAAG | 1 cut(s) | 502 |
| BstC8I | GCNNGC | 1 cut(s) | 318 |
| BstDEI | CTNAG | 4 cut(s) | 99, 584, 878, 915 |
| BstDSI | CCRYGG | 2 cut(s) | 731, 775 |
| BstF5I | GGATG | 5 cut(s) | 52, 339, 490, 580, 846 |
| BstH2I | RGCGCY | 1 cut(s) | 871 |
| BstHHI | GCGC | 2 cut(s) | 870, 975 |
| BstKTI | GATC | 9 cut(s) | 82, 180, 207, 343, 469, 535, 568, 621, 704 |
| BstMAI | GTCTC | 1 cut(s) | 547 |
| BstMBI | GATC | 9 cut(s) | 79, 177, 204, 340, 466, 532, 565, 618, 701 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 109, 874 |
| BstNI | CCWGG | 2 cut(s) | 44, 59 |
| BstSCI | CCNGG | 3 cut(s) | 42, 57, 343 |
| BstSFI | CTRYAG | 2 cut(s) | 324, 557 |
| BstV1I | GCAGC | 1 cut(s) | 901 |
| BstX2I | RGATCY | 5 cut(s) | 177, 340, 466, 532, 618 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 695 |
| BstYI | RGATCY | 5 cut(s) | 177, 340, 466, 532, 618 |
| BsuRI | GGCC | 1 cut(s) | 793 |
| BtgI | CCRYGG | 2 cut(s) | 731, 775 |
| BtsCI | GGATG | 5 cut(s) | 52, 339, 490, 580, 846 |
| BtsI | GCAGTG | 2 cut(s) | 448, 496 |
| BtsIMutI | CAGTG | 2 cut(s) | 448, 496 |
| Cac8I | GCNNGC | 1 cut(s) | 318 |
| CfoI | GCGC | 2 cut(s) | 870, 975 |
| Cfr10I | RCCGGY | 2 cut(s) | 400, 1006 |
| Cfr13I | GGNCC | 1 cut(s) | 791 |
| CseI | GACGC | 1 cut(s) | 171 |
| Csp6I | GTAC | 2 cut(s) | 935, 978 |
| CspAI | ACCGGT | 1 cut(s) | 400 |
| CviAII | CATG | 3 cut(s) | 247, 695, 732 |
| CviQI | GTAC | 2 cut(s) | 935, 978 |
| DdeI | CTNAG | 4 cut(s) | 99, 584, 878, 915 |
| DpnI | GATC | 9 cut(s) | 81, 179, 206, 342, 468, 534, 567, 620, 703 |
| DpnII | GATC | 9 cut(s) | 79, 177, 204, 340, 466, 532, 565, 618, 701 |
| DraI | TTTAAA | 1 cut(s) | 741 |
| Ecl136II | GAGCTC | 1 cut(s) | 520 |
| Eco130I | CCWWGG | 2 cut(s) | 287, 731 |
| Eco24I | GRGCYC | 1 cut(s) | 522 |
| Eco32I | GATATC | 1 cut(s) | 664 |
| Eco53kI | GAGCTC | 1 cut(s) | 520 |
| Eco57I | CTGAAG | 1 cut(s) | 273 |
| EcoICRI | GAGCTC | 1 cut(s) | 520 |
| EcoO109I | RGGNCCY | 1 cut(s) | 791 |
| EcoRII | CCWGG | 2 cut(s) | 42, 57 |
| EcoRV | GATATC | 1 cut(s) | 664 |
| EcoT14I | CCWWGG | 2 cut(s) | 287, 731 |
| EcoT38I | GRGCYC | 1 cut(s) | 522 |
| ErhI | CCWWGG | 2 cut(s) | 287, 731 |
| FaeI | CATG | 3 cut(s) | 250, 698, 735 |
| FaqI | GGGAC | 1 cut(s) | 438 |
| FatI | CATG | 3 cut(s) | 246, 694, 731 |
| FauNDI | CATATG | 1 cut(s) | 850 |
| Fnu4HI | GCNGC | 2 cut(s) | 890, 1036 |
| FokI | GGATG | 5 cut(s) | 59, 346, 497, 587, 853 |
| FriOI | GRGCYC | 1 cut(s) | 522 |
| Fsp4HI | GCNGC | 2 cut(s) | 890, 1036 |
| FspBI | CTAG | 1 cut(s) | 1039 |
| GlaI | GCGC | 2 cut(s) | 869, 974 |
| GluI | GCNGC | 2 cut(s) | 890, 1036 |
| GsuI | CTGGAG | 2 cut(s) | 80, 915 |
| HaeII | RGCGCY | 1 cut(s) | 871 |
| HaeIII | GGCC | 1 cut(s) | 793 |
| HapII | CCGG | 3 cut(s) | 344, 401, 1007 |
| HgaI | GACGC | 1 cut(s) | 171 |
| HhaI | GCGC | 2 cut(s) | 870, 975 |
| Hin1II | CATG | 3 cut(s) | 250, 698, 735 |
| Hin6I | GCGC | 2 cut(s) | 868, 973 |
| HinP1I | GCGC | 2 cut(s) | 868, 973 |
| HincII | GTYRAC | 2 cut(s) | 145, 186 |
| HindII | GTYRAC | 2 cut(s) | 145, 186 |
| HinfI | GANTC | 2 cut(s) | 152, 917 |
| HpaII | CCGG | 3 cut(s) | 344, 401, 1007 |
| HphI | GGTGA | 1 cut(s) | 76 |
| Hpy166II | GTNNAC | 4 cut(s) | 76, 145, 186, 846 |
| Hpy188I | TCNGA | 6 cut(s) | 161, 253, 466, 471, 532, 990 |
| Hpy188III | TCNNGA | 4 cut(s) | 202, 368, 655, 749 |
| Hpy8I | GTNNAC | 4 cut(s) | 76, 145, 186, 846 |
| HpyAV | CCTTC | 7 cut(s) | 115, 124, 248, 444, 652, 782, 812 |
| HpyCH4III | ACNGT | 1 cut(s) | 73 |
| HpyCH4IV | ACGT | 1 cut(s) | 147 |
| HpyCH4V | TGCA | 3 cut(s) | 559, 578, 694 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 109, 874 |
| HpyF3I | CTNAG | 4 cut(s) | 99, 584, 878, 915 |
| HpySE526I | ACGT | 1 cut(s) | 147 |
| Hsp92II | CATG | 3 cut(s) | 250, 698, 735 |
| HspAI | GCGC | 2 cut(s) | 868, 973 |
| Kzo9I | GATC | 9 cut(s) | 79, 177, 204, 340, 466, 532, 565, 618, 701 |
| LmnI | GCTCC | 5 cut(s) | 325, 517, 886, 934, 1032 |
| Lsp1109I | GCAGC | 1 cut(s) | 901 |
| LweI | GCATC | 2 cut(s) | 174, 565 |
| MaeI | CTAG | 1 cut(s) | 1039 |
| MaeII | ACGT | 1 cut(s) | 147 |
| MaeIII | GTNAC | 2 cut(s) | 760, 1009 |
| MalI | GATC | 9 cut(s) | 81, 179, 206, 342, 468, 534, 567, 620, 703 |
| MboI | GATC | 9 cut(s) | 79, 177, 204, 340, 466, 532, 565, 618, 701 |
| MboII | GAAGA | 4 cut(s) | 187, 230, 442, 711 |
| MflI | RGATCY | 5 cut(s) | 177, 340, 466, 532, 618 |
| MhlI | GDGCHC | 2 cut(s) | 522, 931 |
| MluCI | AATT | 3 cut(s) | 301, 922, 962 |
| MlyI | GAGTC | 1 cut(s) | 926 |
| MmeI | TCCRAC | 1 cut(s) | 444 |
| MroXI | GAANNNNTTC | 1 cut(s) | 995 |
| MseI | TTAA | 5 cut(s) | 35, 387, 503, 740, 908 |
| MspA1I | CMGCKG | 1 cut(s) | 594 |
| MspCI | CTTAAG | 1 cut(s) | 502 |
| MspI | CCGG | 3 cut(s) | 344, 401, 1007 |
| MspR9I | CCNGG | 3 cut(s) | 44, 59, 345 |
| MvaI | CCWGG | 2 cut(s) | 44, 59 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 109, 874 |
| NciI | CCSGG | 1 cut(s) | 345 |
| NcoI | CCATGG | 1 cut(s) | 731 |
| NdeI | CATATG | 1 cut(s) | 850 |
| NdeII | GATC | 9 cut(s) | 79, 177, 204, 340, 466, 532, 565, 618, 701 |
| NlaIII | CATG | 3 cut(s) | 250, 698, 735 |
| NlaIV | GGNNCC | 4 cut(s) | 321, 342, 468, 534 |
| NmuCI | GTSAC | 1 cut(s) | 760 |
| PdmI | GAANNNNTTC | 1 cut(s) | 995 |
| PfeI | GAWTC | 1 cut(s) | 152 |
| PflFI | GACNNNGTC | 1 cut(s) | 916 |
| PfoI | TCCNGGA | 2 cut(s) | 42, 343 |
| PinAI | ACCGGT | 1 cut(s) | 400 |
| PkrI | GCNGC | 2 cut(s) | 891, 1037 |
| PleI | GAGTC | 1 cut(s) | 925 |
| PpsI | GAGTC | 1 cut(s) | 925 |
| Psp124BI | GAGCTC | 1 cut(s) | 522 |
| Psp6I | CCWGG | 2 cut(s) | 42, 57 |
| PspGI | CCWGG | 2 cut(s) | 42, 57 |
| PspN4I | GGNNCC | 4 cut(s) | 321, 342, 468, 534 |
| PspPI | GGNCC | 1 cut(s) | 791 |
| PstI | CTGCAG | 1 cut(s) | 561 |
| PsuI | RGATCY | 5 cut(s) | 177, 340, 466, 532, 618 |
| PsyI | GACNNNGTC | 1 cut(s) | 916 |
| PvuII | CAGCTG | 1 cut(s) | 594 |
| RsaI | GTAC | 2 cut(s) | 936, 979 |
| RsaNI | GTAC | 2 cut(s) | 935, 978 |
| SacI | GAGCTC | 1 cut(s) | 522 |
| SaqAI | TTAA | 5 cut(s) | 35, 387, 503, 740, 908 |
| SatI | GCNGC | 2 cut(s) | 890, 1036 |
| Sau3AI | GATC | 9 cut(s) | 79, 177, 204, 340, 466, 532, 565, 618, 701 |
| Sau96I | GGNCC | 1 cut(s) | 791 |
| ScaI | AGTACT | 1 cut(s) | 979 |
| SchI | GAGTC | 1 cut(s) | 926 |
| ScrFI | CCNGG | 3 cut(s) | 44, 59, 345 |
| SduI | GDGCHC | 2 cut(s) | 522, 931 |
| SfaNI | GCATC | 2 cut(s) | 174, 565 |
| SfcI | CTRYAG | 2 cut(s) | 324, 557 |
| SgrAI | CRCCGGYG | 1 cut(s) | 400 |
| SmlI | CTYRAG | 2 cut(s) | 502, 749 |
| SmoI | CTYRAG | 2 cut(s) | 502, 749 |
| Sse9I | AATT | 3 cut(s) | 301, 922, 962 |
| SspMI | CTAG | 1 cut(s) | 1039 |
| SstI | GAGCTC | 1 cut(s) | 522 |
| StyD4I | CCNGG | 3 cut(s) | 42, 57, 343 |
| StyI | CCWWGG | 2 cut(s) | 287, 731 |
| TaaI | ACNGT | 1 cut(s) | 73 |
| TaiI | ACGT | 1 cut(s) | 150 |
| TaqI | TCGA | 5 cut(s) | 203, 564, 656, 863, 920 |
| TaqII | GACCGA | 1 cut(s) | 654 |
| TasI | AATT | 3 cut(s) | 301, 922, 962 |
| TatI | WGTACW | 1 cut(s) | 977 |
| TfiI | GAWTC | 1 cut(s) | 152 |
| Tru1I | TTAA | 5 cut(s) | 35, 387, 503, 740, 908 |
| Tru9I | TTAA | 5 cut(s) | 35, 387, 503, 740, 908 |
| TscAI | CASTG | 2 cut(s) | 448, 496 |
| TseFI | GTSAC | 1 cut(s) | 760 |
| TseI | GCWGC | 2 cut(s) | 889, 1035 |
| Tsp45I | GTSAC | 1 cut(s) | 760 |
| TspDTI | ATGAA | 4 cut(s) | 235, 801, 915, 955 |
| TspGWI | ACGGA | 4 cut(s) | 297, 353, 442, 764 |
| TspRI | CASTG | 2 cut(s) | 448, 496 |
| Tth111I | GACNNNGTC | 1 cut(s) | 916 |
| Vha464I | CTTAAG | 1 cut(s) | 502 |
| XapI | RAATTY | 1 cut(s) | 962 |
| XmnI | GAANNNNTTC | 1 cut(s) | 995 |
| XspI | CTAG | 1 cut(s) | 1039 |
| ZrmI | AGTACT | 1 cut(s) | 979 |