ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 38 - 86 | 3e-06 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 496 |
| AccB1I | GGYRCC | 1 cut(s) | 436 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 71 |
| AccI | GTMKAC | 1 cut(s) | 114 |
| AccIII | TCCGGA | 1 cut(s) | 637 |
| AciI | CCGC | 6 cut(s) | 151, 225, 311, 345, 580, 583 |
| AclWI | GGATC | 1 cut(s) | 784 |
| AcsI | RAATTY | 1 cut(s) | 443 |
| AcyI | GRCGYC | 1 cut(s) | 437 |
| AfaI | GTAC | 2 cut(s) | 88, 790 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 71, 579 |
| AgsI | TTSAA | 1 cut(s) | 97 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 387 |
| AjnI | CCWGG | 1 cut(s) | 157 |
| AluBI | AGCT | 2 cut(s) | 629, 725 |
| AluI | AGCT | 2 cut(s) | 629, 725 |
| Alw21I | GWGCWC | 2 cut(s) | 555, 637 |
| Alw44I | GTGCAC | 1 cut(s) | 551 |
| AlwI | GGATC | 1 cut(s) | 784 |
| Aor13HI | TCCGGA | 1 cut(s) | 637 |
| AoxI | GGCC | 3 cut(s) | 165, 342, 596 |
| ApaLI | GTGCAC | 1 cut(s) | 551 |
| ApoI | RAATTY | 1 cut(s) | 443 |
| AspLEI | GCGC | 1 cut(s) | 439 |
| AspS9I | GGNCC | 1 cut(s) | 426 |
| AsuHPI | GGTGA | 4 cut(s) | 31, 112, 475, 489 |
| AvaII | GGWCC | 1 cut(s) | 426 |
| BaeGI | GKGCMC | 1 cut(s) | 555 |
| BanI | GGYRCC | 1 cut(s) | 436 |
| Bbv12I | GWGCWC | 2 cut(s) | 555, 637 |
| BccI | CCATC | 3 cut(s) | 509, 536, 712 |
| BceAI | ACGGC | 1 cut(s) | 593 |
| BciT130I | CCWGG | 1 cut(s) | 159 |
| BciVI | GTATCC | 1 cut(s) | 462 |
| BfoI | RGCGCY | 1 cut(s) | 440 |
| BfuAI | ACCTGC | 1 cut(s) | 496 |
| BfuI | GTATCC | 1 cut(s) | 462 |
| BisI | GCNGC | 3 cut(s) | 152, 345, 581 |
| BlsI | GCNGC | 3 cut(s) | 153, 346, 582 |
| BmcAI | AGTACT | 1 cut(s) | 790 |
| Bme1390I | CCNGG | 1 cut(s) | 159 |
| Bme18I | GGWCC | 1 cut(s) | 426 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 387 |
| BmgT120I | GGNCC | 1 cut(s) | 426 |
| BmiI | GGNNCC | 3 cut(s) | 285, 438, 654 |
| BmrFI | CCNGG | 1 cut(s) | 159 |
| BmsI | GCATC | 3 cut(s) | 249, 271, 286 |
| BsaAI | YACGTR | 1 cut(s) | 822 |
| BsaHI | GRCGYC | 1 cut(s) | 437 |
| BsaJI | CCNNGG | 2 cut(s) | 158, 356 |
| BsaWI | WCCGGW | 2 cut(s) | 455, 637 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 554, 584 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 71, 579 |
| Bse118I | RCCGGY | 1 cut(s) | 598 |
| Bse1I | ACTGG | 1 cut(s) | 383 |
| BseAI | TCCGGA | 1 cut(s) | 637 |
| BseBI | CCWGG | 1 cut(s) | 159 |
| BseDI | CCNNGG | 2 cut(s) | 158, 356 |
| BseGI | GGATG | 2 cut(s) | 64, 496 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 71, 579 |
| BseNI | ACTGG | 1 cut(s) | 383 |
| BseRI | GAGGAG | 1 cut(s) | 500 |
| BseSI | GKGCMC | 1 cut(s) | 555 |
| Bsh1285I | CGRYCG | 1 cut(s) | 476 |
| BshFI | GGCC | 3 cut(s) | 167, 344, 598 |
| BshNI | GGYRCC | 1 cut(s) | 436 |
| BsiEI | CGRYCG | 1 cut(s) | 476 |
| BsiHKAI | GWGCWC | 2 cut(s) | 555, 637 |
| BsiSI | CCGG | 3 cut(s) | 456, 599, 638 |
| BslFI | GGGAC | 1 cut(s) | 220 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 71, 579 |
| BsmFI | GGGAC | 1 cut(s) | 220 |
| BsnI | GGCC | 3 cut(s) | 167, 344, 598 |
| Bsp1286I | GDGCHC | 2 cut(s) | 555, 637 |
| Bsp13I | TCCGGA | 1 cut(s) | 637 |
| Bsp143I | GATC | 1 cut(s) | 776 |
| BspACI | CCGC | 6 cut(s) | 151, 225, 311, 345, 580, 583 |
| BspANI | GGCC | 3 cut(s) | 167, 344, 598 |
| BspEI | TCCGGA | 1 cut(s) | 637 |
| BspLI | GGNNCC | 3 cut(s) | 285, 438, 654 |
| BspMI | ACCTGC | 1 cut(s) | 496 |
| BspPI | GGATC | 1 cut(s) | 784 |
| BspQI | GCTCTTC | 1 cut(s) | 357 |
| BspT107I | GGYRCC | 1 cut(s) | 436 |
| BsrFI | RCCGGY | 1 cut(s) | 598 |
| BsrI | ACTGG | 1 cut(s) | 383 |
| BssAI | RCCGGY | 1 cut(s) | 598 |
| BssECI | CCNNGG | 2 cut(s) | 158, 356 |
| BssMI | GATC | 1 cut(s) | 776 |
| BssNI | GRCGYC | 1 cut(s) | 437 |
| Bst2UI | CCWGG | 1 cut(s) | 159 |
| Bst4CI | ACNGT | 3 cut(s) | 234, 291, 474 |
| Bst6I | CTCTTC | 1 cut(s) | 357 |
| BstACI | GRCGYC | 1 cut(s) | 437 |
| BstBAI | YACGTR | 1 cut(s) | 822 |
| BstC8I | GCNNGC | 4 cut(s) | 342, 421, 600, 667 |
| BstF5I | GGATG | 2 cut(s) | 64, 496 |
| BstH2I | RGCGCY | 1 cut(s) | 440 |
| BstHHI | GCGC | 1 cut(s) | 439 |
| BstKTI | GATC | 1 cut(s) | 779 |
| BstMBI | GATC | 1 cut(s) | 776 |
| BstMCI | CGRYCG | 1 cut(s) | 476 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 816 |
| BstNI | CCWGG | 1 cut(s) | 159 |
| BstSCI | CCNGG | 1 cut(s) | 157 |
| BstSLI | GKGCMC | 1 cut(s) | 555 |
| BstX2I | RGATCY | 1 cut(s) | 776 |
| BstYI | RGATCY | 1 cut(s) | 776 |
| BsuI | GTATCC | 1 cut(s) | 462 |
| BsuRI | GGCC | 3 cut(s) | 167, 344, 598 |
| BtgZI | GCGATG | 2 cut(s) | 528, 555 |
| BtsCI | GGATG | 2 cut(s) | 64, 496 |
| BveI | ACCTGC | 1 cut(s) | 496 |
| Cac8I | GCNNGC | 4 cut(s) | 342, 421, 600, 667 |
| CfoI | GCGC | 1 cut(s) | 439 |
| Cfr10I | RCCGGY | 1 cut(s) | 598 |
| Cfr13I | GGNCC | 1 cut(s) | 426 |
| CseI | GACGC | 2 cut(s) | 132, 341 |
| Csp6I | GTAC | 2 cut(s) | 87, 789 |
| CviAII | CATG | 5 cut(s) | 71, 196, 239, 520, 683 |
| CviJI | RGCY | 9 cut(s) | 154, 167, 344, 374, 387, 423, 598, 629, 725 |
| CviKI_1 | RGCY | 9 cut(s) | 154, 167, 344, 374, 387, 423, 598, 629, 725 |
| CviQI | GTAC | 2 cut(s) | 87, 789 |
| DinI | GGCGCC | 1 cut(s) | 438 |
| DpnI | GATC | 1 cut(s) | 778 |
| DpnII | GATC | 1 cut(s) | 776 |
| DriI | GACNNNNNGTC | 1 cut(s) | 387 |
| Eam1104I | CTCTTC | 1 cut(s) | 357 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 387 |
| EarI | CTCTTC | 1 cut(s) | 357 |
| EciI | GGCGGA | 2 cut(s) | 326, 598 |
| Eco47I | GGWCC | 1 cut(s) | 426 |
| EcoRI | GAATTC | 1 cut(s) | 443 |
| EcoRII | CCWGG | 1 cut(s) | 157 |
| EcoT22I | ATGCAT | 1 cut(s) | 264 |
| EgeI | GGCGCC | 1 cut(s) | 438 |
| EheI | GGCGCC | 1 cut(s) | 438 |
| FaeI | CATG | 5 cut(s) | 74, 199, 242, 523, 686 |
| FaqI | GGGAC | 1 cut(s) | 220 |
| FatI | CATG | 5 cut(s) | 70, 195, 238, 519, 682 |
| FblI | GTMKAC | 1 cut(s) | 114 |
| Fnu4HI | GCNGC | 3 cut(s) | 152, 345, 581 |
| FokI | GGATG | 2 cut(s) | 71, 503 |
| Fsp4HI | GCNGC | 3 cut(s) | 152, 345, 581 |
| GlaI | GCGC | 1 cut(s) | 438 |
| GluI | GCNGC | 3 cut(s) | 152, 345, 581 |
| HaeII | RGCGCY | 1 cut(s) | 440 |
| HaeIII | GGCC | 3 cut(s) | 167, 344, 598 |
| HapII | CCGG | 3 cut(s) | 456, 599, 638 |
| HgaI | GACGC | 2 cut(s) | 132, 341 |
| HhaI | GCGC | 1 cut(s) | 439 |
| Hin1I | GRCGYC | 1 cut(s) | 437 |
| Hin1II | CATG | 5 cut(s) | 74, 199, 242, 523, 686 |
| Hin6I | GCGC | 1 cut(s) | 437 |
| HinP1I | GCGC | 1 cut(s) | 437 |
| HincII | GTYRAC | 2 cut(s) | 115, 760 |
| HindII | GTYRAC | 2 cut(s) | 115, 760 |
| HinfI | GANTC | 5 cut(s) | 242, 494, 530, 616, 679 |
| HpaI | GTTAAC | 1 cut(s) | 760 |
| HpaII | CCGG | 3 cut(s) | 456, 599, 638 |
| HphI | GGTGA | 4 cut(s) | 31, 112, 475, 489 |
| Hpy166II | GTNNAC | 5 cut(s) | 115, 125, 230, 553, 760 |
| Hpy188I | TCNGA | 5 cut(s) | 207, 267, 357, 478, 766 |
| Hpy188III | TCNNGA | 3 cut(s) | 28, 281, 638 |
| Hpy8I | GTNNAC | 5 cut(s) | 115, 125, 230, 553, 760 |
| Hpy99I | CGWCG | 2 cut(s) | 94, 148 |
| HpyAV | CCTTC | 4 cut(s) | 91, 157, 183, 312 |
| HpyCH4III | ACNGT | 3 cut(s) | 234, 291, 474 |
| HpyCH4IV | ACGT | 2 cut(s) | 89, 821 |
| HpyCH4V | TGCA | 3 cut(s) | 262, 553, 646 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 816 |
| HpySE526I | ACGT | 2 cut(s) | 89, 821 |
| Hsp92I | GRCGYC | 1 cut(s) | 437 |
| Hsp92II | CATG | 5 cut(s) | 74, 199, 242, 523, 686 |
| HspAI | GCGC | 1 cut(s) | 437 |
| KasI | GGCGCC | 1 cut(s) | 436 |
| Kpn2I | TCCGGA | 1 cut(s) | 637 |
| KroI | GCCGGC | 1 cut(s) | 598 |
| KroNI | GCCGGC | 1 cut(s) | 600 |
| KspAI | GTTAAC | 1 cut(s) | 760 |
| Kzo9I | GATC | 1 cut(s) | 776 |
| LguI | GCTCTTC | 1 cut(s) | 357 |
| LmnI | GCTCC | 3 cut(s) | 337, 640, 722 |
| LweI | GCATC | 3 cut(s) | 249, 271, 286 |
| MaeII | ACGT | 2 cut(s) | 89, 821 |
| MalI | GATC | 1 cut(s) | 778 |
| MboI | GATC | 1 cut(s) | 776 |
| MboII | GAAGA | 1 cut(s) | 374 |
| MflI | RGATCY | 1 cut(s) | 776 |
| MhlI | GDGCHC | 2 cut(s) | 555, 637 |
| MluCI | AATT | 6 cut(s) | 443, 641, 657, 674, 729, 746 |
| Mly113I | GGCGCC | 1 cut(s) | 437 |
| MlyI | GAGTC | 2 cut(s) | 236, 673 |
| MmeI | TCCRAC | 2 cut(s) | 230, 456 |
| Mph1103I | ATGCAT | 1 cut(s) | 264 |
| MroI | TCCGGA | 1 cut(s) | 637 |
| MroNI | GCCGGC | 1 cut(s) | 598 |
| MseI | TTAA | 2 cut(s) | 689, 759 |
| MslI | CAYNNNNRTG | 1 cut(s) | 267 |
| MspI | CCGG | 3 cut(s) | 456, 599, 638 |
| MspR9I | CCNGG | 1 cut(s) | 159 |
| MvaI | CCWGG | 1 cut(s) | 159 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 816 |
| NaeI | GCCGGC | 1 cut(s) | 600 |
| NarI | GGCGCC | 1 cut(s) | 437 |
| NdeII | GATC | 1 cut(s) | 776 |
| NgoMIV | GCCGGC | 1 cut(s) | 598 |
| NlaIII | CATG | 5 cut(s) | 74, 199, 242, 523, 686 |
| NlaIV | GGNNCC | 3 cut(s) | 285, 438, 654 |
| NsiI | ATGCAT | 1 cut(s) | 264 |
| PciSI | GCTCTTC | 1 cut(s) | 357 |
| PdiI | GCCGGC | 1 cut(s) | 600 |
| PfeI | GAWTC | 3 cut(s) | 494, 530, 616 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 71 |
| PkrI | GCNGC | 3 cut(s) | 153, 346, 582 |
| PleI | GAGTC | 2 cut(s) | 236, 673 |
| PluTI | GGCGCC | 1 cut(s) | 440 |
| PpsI | GAGTC | 2 cut(s) | 236, 673 |
| Ppu21I | YACGTR | 1 cut(s) | 822 |
| Psp6I | CCWGG | 1 cut(s) | 157 |
| PspGI | CCWGG | 1 cut(s) | 157 |
| PspN4I | GGNNCC | 3 cut(s) | 285, 438, 654 |
| PspPI | GGNCC | 1 cut(s) | 426 |
| PsuI | RGATCY | 1 cut(s) | 776 |
| RsaI | GTAC | 2 cut(s) | 88, 790 |
| RsaNI | GTAC | 2 cut(s) | 87, 789 |
| RseI | CAYNNNNRTG | 1 cut(s) | 267 |
| SalI | GTCGAC | 1 cut(s) | 113 |
| SapI | GCTCTTC | 1 cut(s) | 357 |
| SaqAI | TTAA | 2 cut(s) | 689, 759 |
| SatI | GCNGC | 3 cut(s) | 152, 345, 581 |
| Sau3AI | GATC | 1 cut(s) | 776 |
| Sau96I | GGNCC | 1 cut(s) | 426 |
| ScaI | AGTACT | 1 cut(s) | 790 |
| SchI | GAGTC | 2 cut(s) | 236, 673 |
| ScrFI | CCNGG | 1 cut(s) | 159 |
| SduI | GDGCHC | 2 cut(s) | 555, 637 |
| SfaNI | GCATC | 3 cut(s) | 249, 271, 286 |
| SfoI | GGCGCC | 1 cut(s) | 438 |
| SinI | GGWCC | 1 cut(s) | 426 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 267 |
| Sse9I | AATT | 6 cut(s) | 443, 641, 657, 674, 729, 746 |
| SsiI | CCGC | 6 cut(s) | 151, 225, 311, 345, 580, 583 |
| SspDI | GGCGCC | 1 cut(s) | 436 |
| StyD4I | CCNGG | 1 cut(s) | 157 |
| TaaI | ACNGT | 3 cut(s) | 234, 291, 474 |
| TaiI | ACGT | 2 cut(s) | 92, 824 |
| TaqI | TCGA | 2 cut(s) | 114, 245 |
| TasI | AATT | 6 cut(s) | 443, 641, 657, 674, 729, 746 |
| TatI | WGTACW | 1 cut(s) | 788 |
| TauI | GCSGC | 3 cut(s) | 154, 347, 583 |
| TfiI | GAWTC | 3 cut(s) | 494, 530, 616 |
| Tru1I | TTAA | 2 cut(s) | 689, 759 |
| Tru9I | TTAA | 2 cut(s) | 689, 759 |
| TspDTI | ATGAA | 4 cut(s) | 75, 212, 507, 522 |
| TspGWI | ACGGA | 1 cut(s) | 768 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 71 |
| VneI | GTGCAC | 1 cut(s) | 551 |
| VpaK11BI | GGWCC | 1 cut(s) | 426 |
| XapI | RAATTY | 1 cut(s) | 443 |
| XmiI | GTMKAC | 1 cut(s) | 114 |
| ZrmI | AGTACT | 1 cut(s) | 790 |
| Zsp2I | ATGCAT | 1 cut(s) | 264 |