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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 271, 468 |
| AclWI | GGATC | 8 cut(s) | 41, 54, 152, 172, 185, 402, 509, 522 |
| AcsI | RAATTY | 3 cut(s) | 383, 535, 560 |
| AcyI | GRCGYC | 1 cut(s) | 479 |
| AfaI | GTAC | 3 cut(s) | 133, 400, 445 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 43, 412, 506 |
| AgsI | TTSAA | 6 cut(s) | 28, 297, 425, 437, 601, 728 |
| AjnI | CCWGG | 1 cut(s) | 410 |
| AluBI | AGCT | 1 cut(s) | 214 |
| AluI | AGCT | 1 cut(s) | 214 |
| AlwI | GGATC | 8 cut(s) | 41, 54, 152, 172, 185, 402, 509, 522 |
| Ama87I | CYCGRG | 1 cut(s) | 500 |
| ApoI | RAATTY | 3 cut(s) | 383, 535, 560 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 694 |
| AspS9I | GGNCC | 2 cut(s) | 34, 623 |
| AsuC2I | CCSGG | 3 cut(s) | 380, 501, 502 |
| AsuHPI | GGTGA | 3 cut(s) | 253, 667, 749 |
| AvaI | CYCGRG | 1 cut(s) | 500 |
| AvaII | GGWCC | 2 cut(s) | 34, 623 |
| BamHI | GGATCC | 3 cut(s) | 46, 177, 514 |
| BanII | GRGCYC | 1 cut(s) | 618 |
| BauI | CACGAG | 1 cut(s) | 156 |
| BccI | CCATC | 4 cut(s) | 261, 443, 448, 707 |
| BceAI | ACGGC | 2 cut(s) | 366, 481 |
| BciT130I | CCWGG | 1 cut(s) | 412 |
| BclI | TGATCA | 1 cut(s) | 243 |
| BcnI | CCSGG | 3 cut(s) | 380, 501, 502 |
| BfaI | CTAG | 2 cut(s) | 393, 751 |
| BglII | AGATCT | 1 cut(s) | 184 |
| Bme1390I | CCNGG | 4 cut(s) | 380, 412, 501, 502 |
| Bme18I | GGWCC | 2 cut(s) | 34, 623 |
| BmeT110I | CYCGRG | 1 cut(s) | 500 |
| BmgT120I | GGNCC | 2 cut(s) | 34, 623 |
| BmiI | GGNNCC | 5 cut(s) | 48, 179, 516, 671, 691 |
| BmrFI | CCNGG | 4 cut(s) | 380, 412, 501, 502 |
| BmsI | GCATC | 1 cut(s) | 109 |
| BpuMI | CCSGG | 3 cut(s) | 380, 501, 502 |
| BsaHI | GRCGYC | 1 cut(s) | 479 |
| BsaJI | CCNNGG | 4 cut(s) | 378, 411, 500, 525 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 242, 272, 476, 506 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 43, 412, 506 |
| Bse3DI | GCAATG | 2 cut(s) | 368, 589 |
| BseBI | CCWGG | 1 cut(s) | 412 |
| BseDI | CCNNGG | 4 cut(s) | 378, 411, 500, 525 |
| BseGI | GGATG | 5 cut(s) | 124, 436, 454, 459, 718 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 43, 412, 506 |
| BseMI | GCAATG | 2 cut(s) | 368, 589 |
| BseMII | CTCAG | 2 cut(s) | 631, 671 |
| BseRI | GAGGAG | 2 cut(s) | 32, 431 |
| BsiHKCI | CYCGRG | 1 cut(s) | 500 |
| BsiSI | CCGG | 2 cut(s) | 380, 501 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 43, 412, 506 |
| BsoBI | CYCGRG | 1 cut(s) | 500 |
| Bsp1286I | GDGCHC | 1 cut(s) | 618 |
| Bsp143I | GATC | 7 cut(s) | 46, 144, 177, 184, 243, 407, 514 |
| Bsp19I | CCATGG | 1 cut(s) | 525 |
| BspACI | CCGC | 2 cut(s) | 271, 468 |
| BspCNI | CTCAG | 2 cut(s) | 630, 672 |
| BspLI | GGNNCC | 5 cut(s) | 48, 179, 516, 671, 691 |
| BspPI | GGATC | 8 cut(s) | 41, 54, 152, 172, 185, 402, 509, 522 |
| BsrDI | GCAATG | 2 cut(s) | 368, 589 |
| BssECI | CCNNGG | 4 cut(s) | 378, 411, 500, 525 |
| BssMI | GATC | 7 cut(s) | 46, 144, 177, 184, 243, 407, 514 |
| BssNI | GRCGYC | 1 cut(s) | 479 |
| BssSI | CACGAG | 1 cut(s) | 156 |
| BssT1I | CCWWGG | 1 cut(s) | 525 |
| Bst2BI | CACGAG | 1 cut(s) | 156 |
| Bst2UI | CCWGG | 1 cut(s) | 412 |
| Bst4CI | ACNGT | 3 cut(s) | 113, 258, 403 |
| BstACI | GRCGYC | 1 cut(s) | 479 |
| BstDEI | CTNAG | 2 cut(s) | 617, 680 |
| BstDSI | CCRYGG | 1 cut(s) | 525 |
| BstF5I | GGATG | 5 cut(s) | 124, 436, 454, 459, 718 |
| BstKTI | GATC | 7 cut(s) | 49, 147, 180, 187, 246, 410, 517 |
| BstMBI | GATC | 7 cut(s) | 46, 144, 177, 184, 243, 407, 514 |
| BstNI | CCWGG | 1 cut(s) | 412 |
| BstSCI | CCNGG | 4 cut(s) | 378, 410, 499, 500 |
| BstX2I | RGATCY | 5 cut(s) | 46, 144, 177, 184, 514 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 700 |
| BstYI | RGATCY | 5 cut(s) | 46, 144, 177, 184, 514 |
| BtgI | CCRYGG | 1 cut(s) | 525 |
| BtsCI | GGATG | 5 cut(s) | 124, 436, 454, 459, 718 |
| Cfr13I | GGNCC | 2 cut(s) | 34, 623 |
| Cfr9I | CCCGGG | 1 cut(s) | 500 |
| CseI | GACGC | 1 cut(s) | 468 |
| Csp6I | GTAC | 3 cut(s) | 132, 399, 444 |
| CviAII | CATG | 1 cut(s) | 526 |
| CviJI | RGCY | 4 cut(s) | 214, 339, 616, 672 |
| CviKI_1 | RGCY | 4 cut(s) | 214, 339, 616, 672 |
| CviQI | GTAC | 3 cut(s) | 132, 399, 444 |
| DdeI | CTNAG | 2 cut(s) | 617, 680 |
| DpnI | GATC | 7 cut(s) | 48, 146, 179, 186, 245, 409, 516 |
| DpnII | GATC | 7 cut(s) | 46, 144, 177, 184, 243, 407, 514 |
| EciI | GGCGGA | 1 cut(s) | 286 |
| Eco130I | CCWWGG | 1 cut(s) | 525 |
| Eco24I | GRGCYC | 1 cut(s) | 618 |
| Eco47I | GGWCC | 2 cut(s) | 34, 623 |
| Eco88I | CYCGRG | 1 cut(s) | 500 |
| EcoRII | CCWGG | 1 cut(s) | 410 |
| EcoT14I | CCWWGG | 1 cut(s) | 525 |
| EcoT38I | GRGCYC | 1 cut(s) | 618 |
| ErhI | CCWWGG | 1 cut(s) | 525 |
| FaeI | CATG | 1 cut(s) | 529 |
| FaiI | YATR | 2 cut(s) | 292, 527 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 323, 355 |
| FatI | CATG | 1 cut(s) | 525 |
| FbaI | TGATCA | 1 cut(s) | 243 |
| FokI | GGATG | 5 cut(s) | 131, 443, 461, 466, 725 |
| FriOI | GRGCYC | 1 cut(s) | 618 |
| FspBI | CTAG | 2 cut(s) | 393, 751 |
| HapII | CCGG | 2 cut(s) | 380, 501 |
| HgaI | GACGC | 1 cut(s) | 468 |
| Hin1I | GRCGYC | 1 cut(s) | 479 |
| Hin1II | CATG | 1 cut(s) | 529 |
| HindIII | AAGCTT | 1 cut(s) | 212 |
| HinfI | GANTC | 4 cut(s) | 222, 389, 645, 740 |
| HpaII | CCGG | 2 cut(s) | 380, 501 |
| HphI | GGTGA | 3 cut(s) | 253, 667, 749 |
| Hpy166II | GTNNAC | 1 cut(s) | 463 |
| Hpy188I | TCNGA | 6 cut(s) | 407, 484, 519, 620, 650, 681 |
| Hpy188III | TCNNGA | 5 cut(s) | 37, 148, 158, 219, 728 |
| Hpy8I | GTNNAC | 1 cut(s) | 463 |
| Hpy99I | CGWCG | 1 cut(s) | 484 |
| HpyAV | CCTTC | 2 cut(s) | 317, 645 |
| HpyCH4III | ACNGT | 3 cut(s) | 113, 258, 403 |
| HpyCH4IV | ACGT | 1 cut(s) | 275 |
| HpyCH4V | TGCA | 1 cut(s) | 373 |
| HpyF3I | CTNAG | 2 cut(s) | 617, 680 |
| HpySE526I | ACGT | 1 cut(s) | 275 |
| Hsp92I | GRCGYC | 1 cut(s) | 479 |
| Hsp92II | CATG | 1 cut(s) | 529 |
| Ksp22I | TGATCA | 1 cut(s) | 243 |
| Kzo9I | GATC | 7 cut(s) | 46, 144, 177, 184, 243, 407, 514 |
| LmnI | GCTCC | 2 cut(s) | 544, 669 |
| LpnPI | CCDG | 8 cut(s) | 50, 133, 204, 318, 393, 397, 424, 514 |
| LweI | GCATC | 1 cut(s) | 109 |
| MaeI | CTAG | 2 cut(s) | 393, 751 |
| MaeII | ACGT | 1 cut(s) | 275 |
| MaeIII | GTNAC | 1 cut(s) | 655 |
| MalI | GATC | 7 cut(s) | 48, 146, 179, 186, 245, 409, 516 |
| MboI | GATC | 7 cut(s) | 46, 144, 177, 184, 243, 407, 514 |
| MboII | GAAGA | 4 cut(s) | 173, 276, 339, 716 |
| MflI | RGATCY | 5 cut(s) | 46, 144, 177, 184, 514 |
| MhlI | GDGCHC | 1 cut(s) | 618 |
| MluCI | AATT | 6 cut(s) | 89, 383, 535, 560, 569, 694 |
| MlyI | GAGTC | 3 cut(s) | 398, 654, 749 |
| MmeI | TCCRAC | 3 cut(s) | 176, 462, 700 |
| MroXI | GAANNNNTTC | 1 cut(s) | 694 |
| MseI | TTAA | 7 cut(s) | 125, 230, 495, 533, 555, 572, 593 |
| MspI | CCGG | 2 cut(s) | 380, 501 |
| MspR9I | CCNGG | 4 cut(s) | 380, 412, 501, 502 |
| MvaI | CCWGG | 1 cut(s) | 412 |
| NciI | CCSGG | 3 cut(s) | 380, 501, 502 |
| NcoI | CCATGG | 1 cut(s) | 525 |
| NdeII | GATC | 7 cut(s) | 46, 144, 177, 184, 243, 407, 514 |
| NlaIII | CATG | 1 cut(s) | 529 |
| NlaIV | GGNNCC | 5 cut(s) | 48, 179, 516, 671, 691 |
| NmuCI | GTSAC | 1 cut(s) | 655 |
| PdmI | GAANNNNTTC | 1 cut(s) | 694 |
| PfeI | GAWTC | 1 cut(s) | 222 |
| PleI | GAGTC | 3 cut(s) | 397, 653, 748 |
| PpsI | GAGTC | 3 cut(s) | 397, 653, 748 |
| Psp6I | CCWGG | 1 cut(s) | 410 |
| PspGI | CCWGG | 1 cut(s) | 410 |
| PspN4I | GGNNCC | 5 cut(s) | 48, 179, 516, 671, 691 |
| PspPI | GGNCC | 2 cut(s) | 34, 623 |
| PsuI | RGATCY | 5 cut(s) | 46, 144, 177, 184, 514 |
| RsaI | GTAC | 3 cut(s) | 133, 400, 445 |
| RsaNI | GTAC | 3 cut(s) | 132, 399, 444 |
| SaqAI | TTAA | 7 cut(s) | 125, 230, 495, 533, 555, 572, 593 |
| Sau3AI | GATC | 7 cut(s) | 46, 144, 177, 184, 243, 407, 514 |
| Sau96I | GGNCC | 2 cut(s) | 34, 623 |
| SchI | GAGTC | 3 cut(s) | 398, 654, 749 |
| ScrFI | CCNGG | 4 cut(s) | 380, 412, 501, 502 |
| SduI | GDGCHC | 1 cut(s) | 618 |
| SetI | ASST | 5 cut(s) | 216, 278, 462, 489, 625 |
| SfaNI | GCATC | 1 cut(s) | 109 |
| SinI | GGWCC | 2 cut(s) | 34, 623 |
| SmaI | CCCGGG | 1 cut(s) | 502 |
| Sse9I | AATT | 6 cut(s) | 89, 383, 535, 560, 569, 694 |
| SsiI | CCGC | 2 cut(s) | 271, 468 |
| SspI | AATATT | 1 cut(s) | 311 |
| SspMI | CTAG | 2 cut(s) | 393, 751 |
| StyD4I | CCNGG | 4 cut(s) | 378, 410, 499, 500 |
| StyI | CCWWGG | 1 cut(s) | 525 |
| TaaI | ACNGT | 3 cut(s) | 113, 258, 403 |
| TaiI | ACGT | 1 cut(s) | 278 |
| TaqI | TCGA | 1 cut(s) | 225 |
| TasI | AATT | 6 cut(s) | 89, 383, 535, 560, 569, 694 |
| TfiI | GAWTC | 1 cut(s) | 222 |
| Tru1I | TTAA | 7 cut(s) | 125, 230, 495, 533, 555, 572, 593 |
| Tru9I | TTAA | 7 cut(s) | 125, 230, 495, 533, 555, 572, 593 |
| TseFI | GTSAC | 1 cut(s) | 655 |
| Tsp45I | GTSAC | 1 cut(s) | 655 |
| TspDTI | ATGAA | 1 cut(s) | 152 |
| TspGWI | ACGGA | 1 cut(s) | 461 |
| TspMI | CCCGGG | 1 cut(s) | 500 |
| VpaK11BI | GGWCC | 2 cut(s) | 34, 623 |
| XapI | RAATTY | 3 cut(s) | 383, 535, 560 |
| XmaI | CCCGGG | 1 cut(s) | 500 |
| XmnI | GAANNNNTTC | 1 cut(s) | 694 |
| XspI | CTAG | 2 cut(s) | 393, 751 |