ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 167 |
| AccIII | TCCGGA | 1 cut(s) | 336 |
| AciI | CCGC | 2 cut(s) | 83, 212 |
| AcsI | RAATTY | 2 cut(s) | 311, 332 |
| AfaI | GTAC | 2 cut(s) | 104, 154 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 157, 314 |
| AgsI | TTSAA | 2 cut(s) | 67, 332 |
| AjnI | CCWGG | 1 cut(s) | 261 |
| Alw21I | GWGCWC | 1 cut(s) | 34 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| Aor13HI | TCCGGA | 1 cut(s) | 336 |
| ApoI | RAATTY | 2 cut(s) | 311, 332 |
| AspLEI | GCGC | 1 cut(s) | 261 |
| AsuC2I | CCSGG | 1 cut(s) | 308 |
| AsuHPI | GGTGA | 3 cut(s) | 22, 217, 329 |
| BauI | CACGAG | 1 cut(s) | 57 |
| Bbv12I | GWGCWC | 1 cut(s) | 34 |
| BciT130I | CCWGG | 1 cut(s) | 263 |
| BclI | TGATCA | 1 cut(s) | 319 |
| BcnI | CCSGG | 1 cut(s) | 308 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BisI | GCNGC | 1 cut(s) | 84 |
| BlsI | GCNGC | 1 cut(s) | 85 |
| Bme1390I | CCNGG | 2 cut(s) | 263, 308 |
| BmrFI | CCNGG | 2 cut(s) | 263, 308 |
| BpuMI | CCSGG | 1 cut(s) | 308 |
| BsaJI | CCNNGG | 2 cut(s) | 140, 273 |
| BsaWI | WCCGGW | 2 cut(s) | 157, 336 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 157, 314 |
| Bse1I | ACTGG | 1 cut(s) | 106 |
| BseAI | TCCGGA | 1 cut(s) | 336 |
| BseBI | CCWGG | 1 cut(s) | 263 |
| BseDI | CCNNGG | 2 cut(s) | 140, 273 |
| BseGI | GGATG | 1 cut(s) | 220 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 157, 314 |
| BseMII | CTCAG | 1 cut(s) | 275 |
| BseNI | ACTGG | 1 cut(s) | 106 |
| BseRI | GAGGAG | 1 cut(s) | 20 |
| Bsh1236I | CGCG | 1 cut(s) | 167 |
| BsiHKAI | GWGCWC | 1 cut(s) | 34 |
| BsiSI | CCGG | 3 cut(s) | 158, 308, 337 |
| BslFI | GGGAC | 1 cut(s) | 122 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 157, 314 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 1 cut(s) | 122 |
| Bsp1286I | GDGCHC | 1 cut(s) | 34 |
| Bsp13I | TCCGGA | 1 cut(s) | 336 |
| Bsp143I | GATC | 1 cut(s) | 319 |
| Bsp19I | CCATGG | 1 cut(s) | 140 |
| Bsp68I | TCGCGA | 1 cut(s) | 167 |
| BspACI | CCGC | 2 cut(s) | 83, 212 |
| BspCNI | CTCAG | 1 cut(s) | 276 |
| BspEI | TCCGGA | 1 cut(s) | 336 |
| BspFNI | CGCG | 1 cut(s) | 167 |
| BsrI | ACTGG | 1 cut(s) | 106 |
| BssECI | CCNNGG | 2 cut(s) | 140, 273 |
| BssMI | GATC | 1 cut(s) | 319 |
| BssSI | CACGAG | 1 cut(s) | 57 |
| BssT1I | CCWWGG | 2 cut(s) | 140, 273 |
| Bst2BI | CACGAG | 1 cut(s) | 57 |
| Bst2UI | CCWGG | 1 cut(s) | 263 |
| Bst4CI | ACNGT | 2 cut(s) | 152, 240 |
| BstDEI | CTNAG | 1 cut(s) | 284 |
| BstDSI | CCRYGG | 1 cut(s) | 140 |
| BstF5I | GGATG | 1 cut(s) | 220 |
| BstFNI | CGCG | 1 cut(s) | 167 |
| BstHHI | GCGC | 1 cut(s) | 261 |
| BstKTI | GATC | 1 cut(s) | 322 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstMBI | GATC | 1 cut(s) | 319 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 92 |
| BstNI | CCWGG | 1 cut(s) | 263 |
| BstSCI | CCNGG | 2 cut(s) | 261, 306 |
| BstUI | CGCG | 1 cut(s) | 167 |
| BtgI | CCRYGG | 1 cut(s) | 140 |
| BtgZI | GCGATG | 1 cut(s) | 128 |
| BtsCI | GGATG | 1 cut(s) | 220 |
| BtsIMutI | CAGTG | 1 cut(s) | 245 |
| BtuMI | TCGCGA | 1 cut(s) | 167 |
| CfoI | GCGC | 1 cut(s) | 261 |
| CseI | GACGC | 1 cut(s) | 297 |
| Csp6I | GTAC | 2 cut(s) | 103, 153 |
| CviAII | CATG | 1 cut(s) | 141 |
| CviJI | RGCY | 1 cut(s) | 278 |
| CviKI_1 | RGCY | 1 cut(s) | 278 |
| CviQI | GTAC | 2 cut(s) | 103, 153 |
| DdeI | CTNAG | 1 cut(s) | 284 |
| DpnI | GATC | 1 cut(s) | 321 |
| DpnII | GATC | 1 cut(s) | 319 |
| EciI | GGCGGA | 1 cut(s) | 227 |
| Eco130I | CCWWGG | 2 cut(s) | 140, 273 |
| Eco32I | GATATC | 1 cut(s) | 175 |
| EcoRI | GAATTC | 1 cut(s) | 332 |
| EcoRII | CCWGG | 1 cut(s) | 261 |
| EcoRV | GATATC | 1 cut(s) | 175 |
| EcoT14I | CCWWGG | 2 cut(s) | 140, 273 |
| ErhI | CCWWGG | 2 cut(s) | 140, 273 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 1 cut(s) | 144 |
| FaiI | YATR | 4 cut(s) | 130, 132, 142, 185 |
| FaqI | GGGAC | 1 cut(s) | 122 |
| FatI | CATG | 1 cut(s) | 140 |
| FauNDI | CATATG | 1 cut(s) | 130 |
| FbaI | TGATCA | 1 cut(s) | 319 |
| Fnu4HI | GCNGC | 1 cut(s) | 84 |
| FokI | GGATG | 1 cut(s) | 227 |
| Fsp4HI | GCNGC | 1 cut(s) | 84 |
| GlaI | GCGC | 1 cut(s) | 260 |
| GluI | GCNGC | 1 cut(s) | 84 |
| HapII | CCGG | 3 cut(s) | 158, 308, 337 |
| HgaI | GACGC | 1 cut(s) | 297 |
| HhaI | GCGC | 1 cut(s) | 261 |
| Hin1II | CATG | 1 cut(s) | 144 |
| Hin6I | GCGC | 1 cut(s) | 259 |
| HinP1I | GCGC | 1 cut(s) | 259 |
| HinfI | GANTC | 2 cut(s) | 53, 135 |
| HpaII | CCGG | 3 cut(s) | 158, 308, 337 |
| HphI | GGTGA | 3 cut(s) | 22, 217, 329 |
| Hpy166II | GTNNAC | 2 cut(s) | 155, 196 |
| Hpy188I | TCNGA | 1 cut(s) | 46 |
| Hpy188III | TCNNGA | 3 cut(s) | 57, 166, 337 |
| Hpy8I | GTNNAC | 2 cut(s) | 155, 196 |
| HpyAV | CCTTC | 2 cut(s) | 163, 202 |
| HpyCH4III | ACNGT | 2 cut(s) | 152, 240 |
| HpyCH4IV | ACGT | 1 cut(s) | 16 |
| HpyCH4V | TGCA | 1 cut(s) | 123 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 1 cut(s) | 284 |
| HpySE526I | ACGT | 1 cut(s) | 16 |
| Hsp92II | CATG | 1 cut(s) | 144 |
| HspAI | GCGC | 1 cut(s) | 259 |
| Kpn2I | TCCGGA | 1 cut(s) | 336 |
| Ksp22I | TGATCA | 1 cut(s) | 319 |
| Kzo9I | GATC | 1 cut(s) | 319 |
| LpnPI | CCDG | 7 cut(s) | 20, 65, 119, 171, 248, 275, 321 |
| MaeII | ACGT | 1 cut(s) | 16 |
| MaeIII | GTNAC | 1 cut(s) | 54 |
| MalI | GATC | 1 cut(s) | 321 |
| MboI | GATC | 1 cut(s) | 319 |
| MboII | GAAGA | 2 cut(s) | 79, 109 |
| MfeI | CAATTG | 1 cut(s) | 323 |
| MhlI | GDGCHC | 1 cut(s) | 34 |
| MluCI | AATT | 3 cut(s) | 311, 323, 332 |
| MlyI | GAGTC | 2 cut(s) | 62, 144 |
| MnlI | CCTC | 2 cut(s) | 53, 196 |
| MroI | TCCGGA | 1 cut(s) | 336 |
| MspI | CCGG | 3 cut(s) | 158, 308, 337 |
| MspR9I | CCNGG | 2 cut(s) | 263, 308 |
| MunI | CAATTG | 1 cut(s) | 323 |
| MvaI | CCWGG | 1 cut(s) | 263 |
| MvnI | CGCG | 1 cut(s) | 167 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 92 |
| NciI | CCSGG | 1 cut(s) | 308 |
| NcoI | CCATGG | 1 cut(s) | 140 |
| NdeI | CATATG | 1 cut(s) | 130 |
| NdeII | GATC | 1 cut(s) | 319 |
| NlaIII | CATG | 1 cut(s) | 144 |
| NmuCI | GTSAC | 1 cut(s) | 54 |
| NruI | TCGCGA | 1 cut(s) | 167 |
| PfoI | TCCNGGA | 1 cut(s) | 306 |
| PkrI | GCNGC | 1 cut(s) | 85 |
| PleI | GAGTC | 2 cut(s) | 61, 143 |
| PpsI | GAGTC | 2 cut(s) | 61, 143 |
| Psp6I | CCWGG | 1 cut(s) | 261 |
| PspGI | CCWGG | 1 cut(s) | 261 |
| RruI | TCGCGA | 1 cut(s) | 167 |
| RsaI | GTAC | 2 cut(s) | 104, 154 |
| RsaNI | GTAC | 2 cut(s) | 103, 153 |
| SatI | GCNGC | 1 cut(s) | 84 |
| Sau3AI | GATC | 1 cut(s) | 319 |
| SchI | GAGTC | 2 cut(s) | 62, 144 |
| ScrFI | CCNGG | 2 cut(s) | 263, 308 |
| SduI | GDGCHC | 1 cut(s) | 34 |
| SetI | ASST | 7 cut(s) | 12, 19, 23, 64, 76, 207, 347 |
| Sse9I | AATT | 3 cut(s) | 311, 323, 332 |
| SsiI | CCGC | 2 cut(s) | 83, 212 |
| StyD4I | CCNGG | 2 cut(s) | 261, 306 |
| StyI | CCWWGG | 2 cut(s) | 140, 273 |
| TaaI | ACNGT | 2 cut(s) | 152, 240 |
| TaiI | ACGT | 1 cut(s) | 19 |
| TasI | AATT | 3 cut(s) | 311, 323, 332 |
| TauI | GCSGC | 1 cut(s) | 86 |
| TscAI | CASTG | 1 cut(s) | 245 |
| TseFI | GTSAC | 1 cut(s) | 54 |
| Tsp45I | GTSAC | 1 cut(s) | 54 |
| TspRI | CASTG | 1 cut(s) | 245 |
| XapI | RAATTY | 2 cut(s) | 311, 332 |