ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 884 |
| AccI | GTMKAC | 2 cut(s) | 668, 786 |
| AclWI | GGATC | 3 cut(s) | 234, 428, 773 |
| AcuI | CTGAAG | 1 cut(s) | 795 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 884 |
| AgsI | TTSAA | 6 cut(s) | 44, 160, 461, 466, 652, 710 |
| AjnI | CCWGG | 2 cut(s) | 597, 823 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 318, 350 |
| AluBI | AGCT | 6 cut(s) | 222, 354, 552, 574, 642, 911 |
| AluI | AGCT | 6 cut(s) | 222, 354, 552, 574, 642, 911 |
| Alw21I | GWGCWC | 2 cut(s) | 554, 723 |
| Alw26I | GTCTC | 1 cut(s) | 886 |
| AlwI | GGATC | 3 cut(s) | 234, 428, 773 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 884 |
| Ama87I | CYCGRG | 1 cut(s) | 469 |
| AoxI | GGCC | 1 cut(s) | 748 |
| ApeKI | GCWGC | 2 cut(s) | 295, 829 |
| AspLEI | GCGC | 2 cut(s) | 33, 307 |
| AsuC2I | CCSGG | 1 cut(s) | 244 |
| AsuHPI | GGTGA | 4 cut(s) | 29, 427, 578, 974 |
| AvaI | CYCGRG | 1 cut(s) | 469 |
| BanII | GRGCYC | 1 cut(s) | 554 |
| BbsI | GAAGAC | 3 cut(s) | 51, 449, 1012 |
| Bbv12I | GWGCWC | 2 cut(s) | 554, 723 |
| BbvI | GCAGC | 2 cut(s) | 282, 841 |
| BccI | CCATC | 3 cut(s) | 358, 380, 707 |
| BciT130I | CCWGG | 2 cut(s) | 599, 825 |
| BcnI | CCSGG | 1 cut(s) | 244 |
| BcoDI | GTCTC | 1 cut(s) | 886 |
| BfaI | CTAG | 4 cut(s) | 132, 381, 675, 1042 |
| BfmI | CTRYAG | 2 cut(s) | 637, 783 |
| BisI | GCNGC | 2 cut(s) | 296, 830 |
| BlsI | GCNGC | 2 cut(s) | 297, 831 |
| Bme1390I | CCNGG | 3 cut(s) | 244, 599, 825 |
| BmeT110I | CYCGRG | 1 cut(s) | 469 |
| BmrFI | CCNGG | 3 cut(s) | 244, 599, 825 |
| BmrI | ACTGGG | 1 cut(s) | 894 |
| BmsI | GCATC | 2 cut(s) | 67, 1028 |
| BmuI | ACTGGG | 1 cut(s) | 894 |
| BpiI | GAAGAC | 3 cut(s) | 51, 449, 1012 |
| BpuMI | CCSGG | 1 cut(s) | 244 |
| BsaJI | CCNNGG | 3 cut(s) | 751, 823, 824 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 884 |
| Bse1I | ACTGG | 1 cut(s) | 889 |
| BseBI | CCWGG | 2 cut(s) | 599, 825 |
| BseDI | CCNNGG | 3 cut(s) | 751, 823, 824 |
| BseGI | GGATG | 1 cut(s) | 82 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 884 |
| BseMII | CTCAG | 1 cut(s) | 90 |
| BseNI | ACTGG | 1 cut(s) | 889 |
| BseRI | GAGGAG | 2 cut(s) | 584, 1004 |
| BseXI | GCAGC | 2 cut(s) | 282, 841 |
| BshFI | GGCC | 1 cut(s) | 750 |
| BsiHKAI | GWGCWC | 2 cut(s) | 554, 723 |
| BsiHKCI | CYCGRG | 1 cut(s) | 469 |
| BsiSI | CCGG | 1 cut(s) | 243 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 884 |
| BsmAI | GTCTC | 1 cut(s) | 886 |
| BsnI | GGCC | 1 cut(s) | 750 |
| BsoBI | CYCGRG | 1 cut(s) | 469 |
| Bsp1286I | GDGCHC | 2 cut(s) | 554, 723 |
| Bsp143I | GATC | 4 cut(s) | 55, 239, 433, 778 |
| BspANI | GGCC | 1 cut(s) | 750 |
| BspCNI | CTCAG | 1 cut(s) | 91 |
| BspPI | GGATC | 3 cut(s) | 234, 428, 773 |
| BsrI | ACTGG | 1 cut(s) | 889 |
| BssECI | CCNNGG | 3 cut(s) | 751, 823, 824 |
| BssMI | GATC | 4 cut(s) | 55, 239, 433, 778 |
| Bst2UI | CCWGG | 2 cut(s) | 599, 825 |
| Bst4CI | ACNGT | 3 cut(s) | 73, 376, 408 |
| Bst6I | CTCTTC | 2 cut(s) | 189, 989 |
| BstC8I | GCNNGC | 1 cut(s) | 452 |
| BstDEI | CTNAG | 3 cut(s) | 99, 440, 725 |
| BstEII | GGTNACC | 1 cut(s) | 872 |
| BstF5I | GGATG | 1 cut(s) | 82 |
| BstHHI | GCGC | 2 cut(s) | 33, 307 |
| BstKTI | GATC | 4 cut(s) | 58, 242, 436, 781 |
| BstMAI | GTCTC | 1 cut(s) | 886 |
| BstMBI | GATC | 4 cut(s) | 55, 239, 433, 778 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 304, 351 |
| BstNI | CCWGG | 2 cut(s) | 599, 825 |
| BstNSI | RCATGY | 1 cut(s) | 454 |
| BstPI | GGTNACC | 1 cut(s) | 872 |
| BstSCI | CCNGG | 3 cut(s) | 242, 597, 823 |
| BstSFI | CTRYAG | 2 cut(s) | 637, 783 |
| BstV1I | GCAGC | 2 cut(s) | 282, 841 |
| BstV2I | GAAGAC | 3 cut(s) | 51, 449, 1012 |
| BstX2I | RGATCY | 1 cut(s) | 778 |
| BstYI | RGATCY | 1 cut(s) | 778 |
| BsuRI | GGCC | 1 cut(s) | 750 |
| BtsCI | GGATG | 1 cut(s) | 82 |
| BtsIMutI | CAGTG | 1 cut(s) | 78 |
| Cac8I | GCNNGC | 1 cut(s) | 452 |
| CaiI | CAGNNNCTG | 1 cut(s) | 884 |
| CfoI | GCGC | 2 cut(s) | 33, 307 |
| CseI | GACGC | 2 cut(s) | 443, 476 |
| CviAII | CATG | 5 cut(s) | 322, 451, 512, 802, 941 |
| DdeI | CTNAG | 3 cut(s) | 99, 440, 725 |
| DpnI | GATC | 4 cut(s) | 57, 241, 435, 780 |
| DpnII | GATC | 4 cut(s) | 55, 239, 433, 778 |
| DraI | TTTAAA | 1 cut(s) | 793 |
| Eam1104I | CTCTTC | 2 cut(s) | 189, 989 |
| EarI | CTCTTC | 2 cut(s) | 189, 989 |
| Ecl136II | GAGCTC | 1 cut(s) | 552 |
| Eco24I | GRGCYC | 1 cut(s) | 554 |
| Eco32I | GATATC | 1 cut(s) | 771 |
| Eco53kI | GAGCTC | 1 cut(s) | 552 |
| Eco57I | CTGAAG | 1 cut(s) | 795 |
| Eco88I | CYCGRG | 1 cut(s) | 469 |
| Eco91I | GGTNACC | 1 cut(s) | 872 |
| EcoICRI | GAGCTC | 1 cut(s) | 552 |
| EcoO65I | GGTNACC | 1 cut(s) | 872 |
| EcoRII | CCWGG | 2 cut(s) | 597, 823 |
| EcoRV | GATATC | 1 cut(s) | 771 |
| EcoT38I | GRGCYC | 1 cut(s) | 554 |
| FaeI | CATG | 5 cut(s) | 325, 454, 515, 805, 944 |
| FatI | CATG | 5 cut(s) | 321, 450, 511, 801, 940 |
| FblI | GTMKAC | 2 cut(s) | 668, 786 |
| Fnu4HI | GCNGC | 2 cut(s) | 296, 830 |
| FokI | GGATG | 1 cut(s) | 89 |
| FriOI | GRGCYC | 1 cut(s) | 554 |
| Fsp4HI | GCNGC | 2 cut(s) | 296, 830 |
| FspBI | CTAG | 4 cut(s) | 132, 381, 675, 1042 |
| GlaI | GCGC | 2 cut(s) | 32, 306 |
| GluI | GCNGC | 2 cut(s) | 296, 830 |
| HaeIII | GGCC | 1 cut(s) | 750 |
| HapII | CCGG | 1 cut(s) | 243 |
| HgaI | GACGC | 2 cut(s) | 443, 476 |
| HhaI | GCGC | 2 cut(s) | 33, 307 |
| Hin1II | CATG | 5 cut(s) | 325, 454, 515, 805, 944 |
| Hin6I | GCGC | 2 cut(s) | 31, 305 |
| HinP1I | GCGC | 2 cut(s) | 31, 305 |
| HincII | GTYRAC | 2 cut(s) | 186, 252 |
| HindII | GTYRAC | 2 cut(s) | 186, 252 |
| HindIII | AAGCTT | 1 cut(s) | 909 |
| HinfI | GANTC | 3 cut(s) | 152, 368, 508 |
| HpaII | CCGG | 1 cut(s) | 243 |
| HphI | GGTGA | 4 cut(s) | 29, 427, 578, 974 |
| Hpy166II | GTNNAC | 4 cut(s) | 186, 252, 669, 787 |
| Hpy188I | TCNGA | 4 cut(s) | 433, 492, 589, 775 |
| Hpy188III | TCNNGA | 4 cut(s) | 59, 381, 631, 710 |
| Hpy8I | GTNNAC | 4 cut(s) | 186, 252, 669, 787 |
| Hpy99I | CGWCG | 4 cut(s) | 53, 56, 492, 921 |
| HpyAV | CCTTC | 4 cut(s) | 184, 676, 742, 802 |
| HpyCH4III | ACNGT | 3 cut(s) | 73, 376, 408 |
| HpyCH4IV | ACGT | 2 cut(s) | 147, 916 |
| HpyCH4V | TGCA | 1 cut(s) | 1012 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 304, 351 |
| HpyF3I | CTNAG | 3 cut(s) | 99, 440, 725 |
| HpySE526I | ACGT | 2 cut(s) | 147, 916 |
| Hsp92II | CATG | 5 cut(s) | 325, 454, 515, 805, 944 |
| HspAI | GCGC | 2 cut(s) | 31, 305 |
| Kzo9I | GATC | 4 cut(s) | 55, 239, 433, 778 |
| LmnI | GCTCC | 4 cut(s) | 85, 351, 571, 718 |
| Lsp1109I | GCAGC | 2 cut(s) | 282, 841 |
| LweI | GCATC | 2 cut(s) | 67, 1028 |
| MaeI | CTAG | 4 cut(s) | 132, 381, 675, 1042 |
| MaeII | ACGT | 2 cut(s) | 147, 916 |
| MaeIII | GTNAC | 5 cut(s) | 17, 523, 872, 924, 962 |
| MalI | GATC | 4 cut(s) | 57, 241, 435, 780 |
| MboI | GATC | 4 cut(s) | 55, 239, 433, 778 |
| MfeI | CAATTG | 1 cut(s) | 461 |
| MflI | RGATCY | 1 cut(s) | 778 |
| MhlI | GDGCHC | 2 cut(s) | 554, 723 |
| MluCI | AATT | 3 cut(s) | 461, 607, 1026 |
| MmeI | TCCRAC | 1 cut(s) | 470 |
| MseI | TTAA | 7 cut(s) | 144, 618, 792, 969, 981, 1029, 1038 |
| MslI | CAYNNNNRTG | 2 cut(s) | 71, 160 |
| MspI | CCGG | 1 cut(s) | 243 |
| MspR9I | CCNGG | 3 cut(s) | 244, 599, 825 |
| MunI | CAATTG | 1 cut(s) | 461 |
| MvaI | CCWGG | 2 cut(s) | 599, 825 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 304, 351 |
| NciI | CCSGG | 1 cut(s) | 244 |
| NdeII | GATC | 4 cut(s) | 55, 239, 433, 778 |
| NlaIII | CATG | 5 cut(s) | 325, 454, 515, 805, 944 |
| NmeAIII | GCCGAG | 1 cut(s) | 776 |
| NmuCI | GTSAC | 4 cut(s) | 17, 523, 924, 962 |
| NspI | RCATGY | 1 cut(s) | 454 |
| PaeI | GCATGC | 1 cut(s) | 454 |
| PasI | CCCWGGG | 1 cut(s) | 824 |
| PfeI | GAWTC | 3 cut(s) | 152, 368, 508 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 884 |
| PkrI | GCNGC | 2 cut(s) | 297, 831 |
| Psp124BI | GAGCTC | 1 cut(s) | 554 |
| Psp6I | CCWGG | 2 cut(s) | 597, 823 |
| PspEI | GGTNACC | 1 cut(s) | 872 |
| PspGI | CCWGG | 2 cut(s) | 597, 823 |
| PstNI | CAGNNNCTG | 1 cut(s) | 884 |
| PsuI | RGATCY | 1 cut(s) | 778 |
| RseI | CAYNNNNRTG | 2 cut(s) | 71, 160 |
| SacI | GAGCTC | 1 cut(s) | 554 |
| SaqAI | TTAA | 7 cut(s) | 144, 618, 792, 969, 981, 1029, 1038 |
| SatI | GCNGC | 2 cut(s) | 296, 830 |
| Sau3AI | GATC | 4 cut(s) | 55, 239, 433, 778 |
| ScrFI | CCNGG | 3 cut(s) | 244, 599, 825 |
| SduI | GDGCHC | 2 cut(s) | 554, 723 |
| SfaNI | GCATC | 2 cut(s) | 67, 1028 |
| SfcI | CTRYAG | 2 cut(s) | 637, 783 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 71, 160 |
| SphI | GCATGC | 1 cut(s) | 454 |
| Sse9I | AATT | 3 cut(s) | 461, 607, 1026 |
| SspI | AATATT | 1 cut(s) | 706 |
| SspMI | CTAG | 4 cut(s) | 132, 381, 675, 1042 |
| SstI | GAGCTC | 1 cut(s) | 554 |
| StyD4I | CCNGG | 3 cut(s) | 242, 597, 823 |
| TaaI | ACNGT | 3 cut(s) | 73, 376, 408 |
| TaiI | ACGT | 2 cut(s) | 150, 919 |
| TaqI | TCGA | 2 cut(s) | 238, 632 |
| TasI | AATT | 3 cut(s) | 461, 607, 1026 |
| TfiI | GAWTC | 3 cut(s) | 152, 368, 508 |
| Tru1I | TTAA | 7 cut(s) | 144, 618, 792, 969, 981, 1029, 1038 |
| Tru9I | TTAA | 7 cut(s) | 144, 618, 792, 969, 981, 1029, 1038 |
| TscAI | CASTG | 1 cut(s) | 78 |
| TseFI | GTSAC | 4 cut(s) | 17, 523, 924, 962 |
| TseI | GCWGC | 2 cut(s) | 295, 829 |
| Tsp45I | GTSAC | 4 cut(s) | 17, 523, 924, 962 |
| TspDTI | ATGAA | 1 cut(s) | 818 |
| TspRI | CASTG | 1 cut(s) | 78 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 884 |
| XbaI | TCTAGA | 1 cut(s) | 380 |
| XceI | RCATGY | 1 cut(s) | 454 |
| XmiI | GTMKAC | 2 cut(s) | 668, 786 |
| XspI | CTAG | 4 cut(s) | 132, 381, 675, 1042 |