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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 241 |
| AccI | GTMKAC | 1 cut(s) | 525 |
| AciI | CCGC | 2 cut(s) | 443, 496 |
| AclWI | GGATC | 6 cut(s) | 27, 61, 63, 74, 417, 491 |
| AcoI | YGGCCR | 1 cut(s) | 36 |
| AcsI | RAATTY | 2 cut(s) | 159, 489 |
| AcyI | GRCGYC | 1 cut(s) | 522 |
| AfaI | GTAC | 1 cut(s) | 94 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 221, 299 |
| AgsI | TTSAA | 2 cut(s) | 140, 205 |
| AjnI | CCWGG | 1 cut(s) | 215 |
| AluBI | AGCT | 2 cut(s) | 257, 340 |
| AluI | AGCT | 2 cut(s) | 257, 340 |
| Alw21I | GWGCWC | 1 cut(s) | 342 |
| AlwI | GGATC | 6 cut(s) | 27, 61, 63, 74, 417, 491 |
| AoxI | GGCC | 2 cut(s) | 36, 111 |
| ApaI | GGGCCC | 1 cut(s) | 115 |
| ApoI | RAATTY | 2 cut(s) | 159, 489 |
| AspLEI | GCGC | 1 cut(s) | 518 |
| AspS9I | GGNCC | 2 cut(s) | 111, 112 |
| BaeGI | GKGCMC | 1 cut(s) | 115 |
| BalI | TGGCCA | 1 cut(s) | 38 |
| BanII | GRGCYC | 2 cut(s) | 115, 342 |
| Bbv12I | GWGCWC | 1 cut(s) | 342 |
| BccI | CCATC | 3 cut(s) | 289, 388, 459 |
| BciT130I | CCWGG | 1 cut(s) | 217 |
| BfaI | CTAG | 1 cut(s) | 254 |
| BfoI | RGCGCY | 1 cut(s) | 519 |
| BfuAI | ACCTGC | 1 cut(s) | 241 |
| BlpI | GCTNAGC | 1 cut(s) | 258 |
| Bme1390I | CCNGG | 1 cut(s) | 217 |
| BmgT120I | GGNCC | 2 cut(s) | 111, 112 |
| BmiI | GGNNCC | 1 cut(s) | 113 |
| BmrFI | CCNGG | 1 cut(s) | 217 |
| BmsI | GCATC | 1 cut(s) | 172 |
| Bpu10I | CCTNAGC | 1 cut(s) | 341 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 258 |
| BsaBI | GATNNNNATC | 1 cut(s) | 153 |
| BsaHI | GRCGYC | 1 cut(s) | 522 |
| BsaJI | CCNNGG | 1 cut(s) | 215 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 221, 299 |
| Bse118I | RCCGGY | 1 cut(s) | 518 |
| Bse1I | ACTGG | 1 cut(s) | 70 |
| Bse8I | GATNNNNATC | 1 cut(s) | 153 |
| BseBI | CCWGG | 1 cut(s) | 217 |
| BseDI | CCNNGG | 1 cut(s) | 215 |
| BseGI | GGATG | 1 cut(s) | 351 |
| BseJI | GATNNNNATC | 1 cut(s) | 153 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 221, 299 |
| BseMII | CTCAG | 2 cut(s) | 249, 355 |
| BseNI | ACTGG | 1 cut(s) | 70 |
| BseRI | GAGGAG | 2 cut(s) | 20, 475 |
| BseSI | GKGCMC | 1 cut(s) | 115 |
| BsgI | GTGCAG | 1 cut(s) | 469 |
| BshFI | GGCC | 2 cut(s) | 38, 113 |
| BsiHKAI | GWGCWC | 1 cut(s) | 342 |
| BsiSI | CCGG | 1 cut(s) | 519 |
| BslFI | GGGAC | 1 cut(s) | 198 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 221, 299 |
| BsmFI | GGGAC | 1 cut(s) | 198 |
| BsnI | GGCC | 2 cut(s) | 38, 113 |
| Bsp120I | GGGCCC | 1 cut(s) | 111 |
| Bsp1286I | GDGCHC | 2 cut(s) | 115, 342 |
| Bsp143I | GATC | 8 cut(s) | 19, 55, 66, 79, 154, 409, 483, 509 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 258 |
| BspACI | CCGC | 2 cut(s) | 443, 496 |
| BspANI | GGCC | 2 cut(s) | 38, 113 |
| BspCNI | CTCAG | 2 cut(s) | 250, 354 |
| BspHI | TCATGA | 1 cut(s) | 240 |
| BspLI | GGNNCC | 1 cut(s) | 113 |
| BspMI | ACCTGC | 1 cut(s) | 241 |
| BspPI | GGATC | 6 cut(s) | 27, 61, 63, 74, 417, 491 |
| BsrFI | RCCGGY | 1 cut(s) | 518 |
| BsrI | ACTGG | 1 cut(s) | 70 |
| BssAI | RCCGGY | 1 cut(s) | 518 |
| BssECI | CCNNGG | 1 cut(s) | 215 |
| BssMI | GATC | 8 cut(s) | 19, 55, 66, 79, 154, 409, 483, 509 |
| BssNI | GRCGYC | 1 cut(s) | 522 |
| Bst2UI | CCWGG | 1 cut(s) | 217 |
| Bst6I | CTCTTC | 2 cut(s) | 117, 170 |
| BstACI | GRCGYC | 1 cut(s) | 522 |
| BstC8I | GCNNGC | 1 cut(s) | 520 |
| BstDEI | CTNAG | 2 cut(s) | 258, 341 |
| BstF5I | GGATG | 1 cut(s) | 351 |
| BstH2I | RGCGCY | 1 cut(s) | 519 |
| BstHHI | GCGC | 1 cut(s) | 518 |
| BstKTI | GATC | 8 cut(s) | 22, 58, 69, 82, 157, 412, 486, 512 |
| BstMBI | GATC | 8 cut(s) | 19, 55, 66, 79, 154, 409, 483, 509 |
| BstNI | CCWGG | 1 cut(s) | 217 |
| BstSCI | CCNGG | 1 cut(s) | 215 |
| BstSLI | GKGCMC | 1 cut(s) | 115 |
| BstX2I | RGATCY | 2 cut(s) | 19, 79 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 34 |
| BstYI | RGATCY | 2 cut(s) | 19, 79 |
| BsuRI | GGCC | 2 cut(s) | 38, 113 |
| BtsCI | GGATG | 1 cut(s) | 351 |
| BveI | ACCTGC | 1 cut(s) | 241 |
| Cac8I | GCNNGC | 1 cut(s) | 520 |
| CciI | TCATGA | 1 cut(s) | 240 |
| CfoI | GCGC | 1 cut(s) | 518 |
| Cfr10I | RCCGGY | 1 cut(s) | 518 |
| Cfr13I | GGNCC | 2 cut(s) | 111, 112 |
| CseI | GACGC | 1 cut(s) | 511 |
| Csp6I | GTAC | 1 cut(s) | 93 |
| CviAII | CATG | 3 cut(s) | 97, 241, 333 |
| CviJI | RGCY | 5 cut(s) | 38, 113, 257, 306, 340 |
| CviKI_1 | RGCY | 5 cut(s) | 38, 113, 257, 306, 340 |
| CviQI | GTAC | 1 cut(s) | 93 |
| DdeI | CTNAG | 2 cut(s) | 258, 341 |
| DpnI | GATC | 8 cut(s) | 21, 57, 68, 81, 156, 411, 485, 511 |
| DpnII | GATC | 8 cut(s) | 19, 55, 66, 79, 154, 409, 483, 509 |
| EaeI | YGGCCR | 1 cut(s) | 36 |
| Eam1104I | CTCTTC | 2 cut(s) | 117, 170 |
| EarI | CTCTTC | 2 cut(s) | 117, 170 |
| EciI | GGCGGA | 2 cut(s) | 458, 511 |
| Ecl136II | GAGCTC | 1 cut(s) | 340 |
| Eco24I | GRGCYC | 2 cut(s) | 115, 342 |
| Eco53kI | GAGCTC | 1 cut(s) | 340 |
| EcoICRI | GAGCTC | 1 cut(s) | 340 |
| EcoO109I | RGGNCCY | 1 cut(s) | 112 |
| EcoRI | GAATTC | 1 cut(s) | 159 |
| EcoRII | CCWGG | 1 cut(s) | 215 |
| EcoT38I | GRGCYC | 2 cut(s) | 115, 342 |
| FaeI | CATG | 3 cut(s) | 100, 244, 336 |
| FaiI | YATR | 4 cut(s) | 98, 242, 280, 334 |
| FaqI | GGGAC | 1 cut(s) | 198 |
| FatI | CATG | 3 cut(s) | 96, 240, 332 |
| FblI | GTMKAC | 1 cut(s) | 525 |
| FokI | GGATG | 1 cut(s) | 358 |
| FriOI | GRGCYC | 2 cut(s) | 115, 342 |
| FspBI | CTAG | 1 cut(s) | 254 |
| GlaI | GCGC | 1 cut(s) | 517 |
| HaeII | RGCGCY | 1 cut(s) | 519 |
| HaeIII | GGCC | 2 cut(s) | 38, 113 |
| HapII | CCGG | 1 cut(s) | 519 |
| HgaI | GACGC | 1 cut(s) | 511 |
| HhaI | GCGC | 1 cut(s) | 518 |
| Hin1I | GRCGYC | 1 cut(s) | 522 |
| Hin1II | CATG | 3 cut(s) | 100, 244, 336 |
| Hin6I | GCGC | 1 cut(s) | 516 |
| HinP1I | GCGC | 1 cut(s) | 516 |
| HincII | GTYRAC | 1 cut(s) | 526 |
| HindII | GTYRAC | 1 cut(s) | 526 |
| HinfI | GANTC | 3 cut(s) | 149, 211, 371 |
| HpaII | CCGG | 1 cut(s) | 519 |
| Hpy166II | GTNNAC | 2 cut(s) | 326, 526 |
| Hpy188I | TCNGA | 4 cut(s) | 60, 154, 376, 488 |
| Hpy188III | TCNNGA | 2 cut(s) | 241, 343 |
| Hpy8I | GTNNAC | 2 cut(s) | 326, 526 |
| Hpy99I | CGWCG | 1 cut(s) | 527 |
| HpyAV | CCTTC | 4 cut(s) | 190, 199, 371, 433 |
| HpyCH4IV | ACGT | 1 cut(s) | 103 |
| HpyCH4V | TGCA | 3 cut(s) | 185, 356, 450 |
| HpyF3I | CTNAG | 2 cut(s) | 258, 341 |
| HpySE526I | ACGT | 1 cut(s) | 103 |
| Hsp92I | GRCGYC | 1 cut(s) | 522 |
| Hsp92II | CATG | 3 cut(s) | 100, 244, 336 |
| HspAI | GCGC | 1 cut(s) | 516 |
| KroI | GCCGGC | 1 cut(s) | 518 |
| KroNI | GCCGGC | 1 cut(s) | 520 |
| Kzo9I | GATC | 8 cut(s) | 19, 55, 66, 79, 154, 409, 483, 509 |
| LpnPI | CCDG | 9 cut(s) | 83, 202, 207, 229, 246, 262, 328, 392, 436 |
| LweI | GCATC | 1 cut(s) | 172 |
| MaeI | CTAG | 1 cut(s) | 254 |
| MaeII | ACGT | 1 cut(s) | 103 |
| MalI | GATC | 8 cut(s) | 21, 57, 68, 81, 156, 411, 485, 511 |
| MboI | GATC | 8 cut(s) | 19, 55, 66, 79, 154, 409, 483, 509 |
| MboII | GAAGA | 6 cut(s) | 56, 89, 134, 157, 158, 403 |
| MfeI | CAATTG | 1 cut(s) | 351 |
| MflI | RGATCY | 2 cut(s) | 19, 79 |
| MhlI | GDGCHC | 2 cut(s) | 115, 342 |
| MlsI | TGGCCA | 1 cut(s) | 38 |
| MluCI | AATT | 3 cut(s) | 159, 351, 489 |
| MluNI | TGGCCA | 1 cut(s) | 38 |
| MlyI | GAGTC | 1 cut(s) | 220 |
| MnlI | CCTC | 8 cut(s) | 46, 118, 264, 307, 356, 429, 453, 474 |
| Mox20I | TGGCCA | 1 cut(s) | 38 |
| MreI | CGCCGGCG | 1 cut(s) | 518 |
| MroNI | GCCGGC | 1 cut(s) | 518 |
| MscI | TGGCCA | 1 cut(s) | 38 |
| MseI | TTAA | 1 cut(s) | 228 |
| Msp20I | TGGCCA | 1 cut(s) | 38 |
| MspI | CCGG | 1 cut(s) | 519 |
| MspR9I | CCNGG | 1 cut(s) | 217 |
| MunI | CAATTG | 1 cut(s) | 351 |
| MvaI | CCWGG | 1 cut(s) | 217 |
| NaeI | GCCGGC | 1 cut(s) | 520 |
| NdeII | GATC | 8 cut(s) | 19, 55, 66, 79, 154, 409, 483, 509 |
| NgoMIV | GCCGGC | 1 cut(s) | 518 |
| NlaIII | CATG | 3 cut(s) | 100, 244, 336 |
| NlaIV | GGNNCC | 1 cut(s) | 113 |
| PagI | TCATGA | 1 cut(s) | 240 |
| PdiI | GCCGGC | 1 cut(s) | 520 |
| PfeI | GAWTC | 2 cut(s) | 149, 371 |
| PleI | GAGTC | 1 cut(s) | 219 |
| PpsI | GAGTC | 1 cut(s) | 219 |
| Psp124BI | GAGCTC | 1 cut(s) | 342 |
| Psp6I | CCWGG | 1 cut(s) | 215 |
| PspGI | CCWGG | 1 cut(s) | 215 |
| PspN4I | GGNNCC | 1 cut(s) | 113 |
| PspOMI | GGGCCC | 1 cut(s) | 111 |
| PspPI | GGNCC | 2 cut(s) | 111, 112 |
| PsuI | RGATCY | 2 cut(s) | 19, 79 |
| RsaI | GTAC | 1 cut(s) | 94 |
| RsaNI | GTAC | 1 cut(s) | 93 |
| SacI | GAGCTC | 1 cut(s) | 342 |
| SalI | GTCGAC | 1 cut(s) | 524 |
| SaqAI | TTAA | 1 cut(s) | 228 |
| Sau3AI | GATC | 8 cut(s) | 19, 55, 66, 79, 154, 409, 483, 509 |
| Sau96I | GGNCC | 2 cut(s) | 111, 112 |
| SchI | GAGTC | 1 cut(s) | 220 |
| ScrFI | CCNGG | 1 cut(s) | 217 |
| SduI | GDGCHC | 2 cut(s) | 115, 342 |
| SetI | ASST | 9 cut(s) | 12, 106, 129, 179, 201, 226, 235, 259, 342 |
| SfaNI | GCATC | 1 cut(s) | 172 |
| SgrAI | CRCCGGYG | 1 cut(s) | 518 |
| Sse9I | AATT | 3 cut(s) | 159, 351, 489 |
| SsiI | CCGC | 2 cut(s) | 443, 496 |
| SspMI | CTAG | 1 cut(s) | 254 |
| SstI | GAGCTC | 1 cut(s) | 342 |
| StyD4I | CCNGG | 1 cut(s) | 215 |
| TaiI | ACGT | 1 cut(s) | 106 |
| TaqI | TCGA | 3 cut(s) | 157, 417, 525 |
| TasI | AATT | 3 cut(s) | 159, 351, 489 |
| TfiI | GAWTC | 2 cut(s) | 149, 371 |
| Tru1I | TTAA | 1 cut(s) | 228 |
| Tru9I | TTAA | 1 cut(s) | 228 |
| TspDTI | ATGAA | 3 cut(s) | 57, 113, 229 |
| XapI | RAATTY | 2 cut(s) | 159, 489 |
| XmiI | GTMKAC | 1 cut(s) | 525 |
| XspI | CTAG | 1 cut(s) | 254 |