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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 28 |
| AccB1I | GGYRCC | 1 cut(s) | 364 |
| AccBSI | CCGCTC | 1 cut(s) | 539 |
| AccI | GTMKAC | 1 cut(s) | 279 |
| AccII | CGCG | 1 cut(s) | 27 |
| AciI | CCGC | 7 cut(s) | 25, 362, 394, 463, 494, 537, 696 |
| AclWI | GGATC | 1 cut(s) | 672 |
| AcoI | YGGCCR | 3 cut(s) | 525, 534, 649 |
| AcyI | GRCGYC | 1 cut(s) | 425 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 37, 52, 197, 347, 434, 552, 764 |
| AflIII | ACRYGT | 1 cut(s) | 356 |
| AgeI | ACCGGT | 1 cut(s) | 500 |
| AgsI | TTSAA | 4 cut(s) | 173, 182, 680, 752 |
| AjiI | CACGTC | 1 cut(s) | 75 |
| AjnI | CCWGG | 1 cut(s) | 346 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 561, 593 |
| AluBI | AGCT | 3 cut(s) | 379, 399, 730 |
| AluI | AGCT | 3 cut(s) | 379, 399, 730 |
| Alw26I | GTCTC | 1 cut(s) | 416 |
| AlwI | GGATC | 1 cut(s) | 672 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 235, 635 |
| Ama87I | CYCGRG | 1 cut(s) | 782 |
| AoxI | GGCC | 7 cut(s) | 43, 310, 525, 534, 649, 739, 800 |
| ApaI | GGGCCC | 1 cut(s) | 743 |
| AsiGI | ACCGGT | 1 cut(s) | 500 |
| AspS9I | GGNCC | 4 cut(s) | 373, 739, 740, 800 |
| AsuC2I | CCSGG | 1 cut(s) | 758 |
| AsuHPI | GGTGA | 3 cut(s) | 277, 311, 772 |
| AsuII | TTCGAA | 1 cut(s) | 713 |
| AvaI | CYCGRG | 1 cut(s) | 782 |
| AvaII | GGWCC | 1 cut(s) | 373 |
| BaeGI | GKGCMC | 1 cut(s) | 743 |
| BanI | GGYRCC | 1 cut(s) | 364 |
| BanII | GRGCYC | 2 cut(s) | 58, 743 |
| BbsI | GAAGAC | 1 cut(s) | 266 |
| BccI | CCATC | 4 cut(s) | 290, 475, 483, 566 |
| BceAI | ACGGC | 2 cut(s) | 636, 664 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 454, 488 |
| BciT130I | CCWGG | 1 cut(s) | 348 |
| BclI | TGATCA | 1 cut(s) | 267 |
| BcnI | CCSGG | 1 cut(s) | 758 |
| BcoDI | GTCTC | 1 cut(s) | 416 |
| BfaI | CTAG | 4 cut(s) | 380, 429, 668, 731 |
| BfmI | CTRYAG | 1 cut(s) | 147 |
| BfuAI | ACCTGC | 1 cut(s) | 28 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 533 |
| BisI | GCNGC | 2 cut(s) | 363, 537 |
| BlsI | GCNGC | 2 cut(s) | 364, 538 |
| Bme1390I | CCNGG | 2 cut(s) | 348, 758 |
| Bme18I | GGWCC | 1 cut(s) | 373 |
| BmeT110I | CYCGRG | 1 cut(s) | 782 |
| BmgBI | CACGTC | 1 cut(s) | 75 |
| BmgT120I | GGNCC | 4 cut(s) | 373, 739, 740, 800 |
| BmiI | GGNNCC | 3 cut(s) | 366, 741, 742 |
| BmrFI | CCNGG | 2 cut(s) | 348, 758 |
| BmsI | GCATC | 1 cut(s) | 480 |
| BpiI | GAAGAC | 1 cut(s) | 266 |
| BpmI | CTGGAG | 2 cut(s) | 17, 257 |
| Bpu14I | TTCGAA | 1 cut(s) | 713 |
| BpuEI | CTTGAG | 1 cut(s) | 42 |
| BpuMI | CCSGG | 1 cut(s) | 758 |
| BsaAI | YACGTR | 1 cut(s) | 329 |
| BsaHI | GRCGYC | 1 cut(s) | 425 |
| BsaJI | CCNNGG | 2 cut(s) | 347, 528 |
| BsaWI | WCCGGW | 2 cut(s) | 367, 500 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 230, 260 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 37, 52, 197, 347, 434, 552, 764 |
| Bse118I | RCCGGY | 1 cut(s) | 500 |
| Bse1I | ACTGG | 2 cut(s) | 313, 520 |
| BseBI | CCWGG | 1 cut(s) | 348 |
| BseDI | CCNNGG | 2 cut(s) | 347, 528 |
| BseGI | GGATG | 4 cut(s) | 280, 301, 494, 649 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 37, 52, 197, 347, 434, 552, 764 |
| BseNI | ACTGG | 2 cut(s) | 313, 520 |
| BseRI | GAGGAG | 2 cut(s) | 173, 434 |
| BseSI | GKGCMC | 1 cut(s) | 743 |
| BseX3I | CGGCCG | 1 cut(s) | 649 |
| BseYI | CCCAGC | 1 cut(s) | 399 |
| BsgI | GTGCAG | 1 cut(s) | 113 |
| Bsh1236I | CGCG | 1 cut(s) | 27 |
| Bsh1285I | CGRYCG | 3 cut(s) | 196, 452, 652 |
| BshFI | GGCC | 7 cut(s) | 45, 312, 527, 536, 651, 741, 802 |
| BshNI | GGYRCC | 1 cut(s) | 364 |
| BshTI | ACCGGT | 1 cut(s) | 500 |
| BsiEI | CGRYCG | 3 cut(s) | 196, 452, 652 |
| BsiHKCI | CYCGRG | 1 cut(s) | 782 |
| BsiSI | CCGG | 3 cut(s) | 368, 501, 758 |
| BslFI | GGGAC | 3 cut(s) | 529, 604, 740 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 37, 52, 197, 347, 434, 552, 764 |
| BsmAI | GTCTC | 1 cut(s) | 416 |
| BsmBI | CGTCTC | 1 cut(s) | 416 |
| BsmFI | GGGAC | 3 cut(s) | 529, 604, 740 |
| BsnI | GGCC | 7 cut(s) | 45, 312, 527, 536, 651, 741, 802 |
| BsoBI | CYCGRG | 1 cut(s) | 782 |
| Bsp119I | TTCGAA | 1 cut(s) | 713 |
| Bsp120I | GGGCCC | 1 cut(s) | 739 |
| Bsp1286I | GDGCHC | 2 cut(s) | 58, 743 |
| Bsp143I | GATC | 4 cut(s) | 193, 267, 664, 775 |
| BspACI | CCGC | 7 cut(s) | 25, 362, 394, 463, 494, 537, 696 |
| BspANI | GGCC | 7 cut(s) | 45, 312, 527, 536, 651, 741, 802 |
| BspFNI | CGCG | 1 cut(s) | 27 |
| BspLI | GGNNCC | 3 cut(s) | 366, 741, 742 |
| BspMAI | CTGCAG | 1 cut(s) | 151 |
| BspMI | ACCTGC | 1 cut(s) | 28 |
| BspPI | GGATC | 1 cut(s) | 672 |
| BspT104I | TTCGAA | 1 cut(s) | 713 |
| BspT107I | GGYRCC | 1 cut(s) | 364 |
| BsrBI | CCGCTC | 1 cut(s) | 539 |
| BsrFI | RCCGGY | 1 cut(s) | 500 |
| BsrI | ACTGG | 2 cut(s) | 313, 520 |
| BssAI | RCCGGY | 1 cut(s) | 500 |
| BssECI | CCNNGG | 2 cut(s) | 347, 528 |
| BssMI | GATC | 4 cut(s) | 193, 267, 664, 775 |
| BssNI | GRCGYC | 1 cut(s) | 425 |
| Bst2UI | CCWGG | 1 cut(s) | 348 |
| Bst4CI | ACNGT | 1 cut(s) | 265 |
| BstACI | GRCGYC | 1 cut(s) | 425 |
| BstBAI | YACGTR | 1 cut(s) | 329 |
| BstBI | TTCGAA | 1 cut(s) | 713 |
| BstDEI | CTNAG | 1 cut(s) | 813 |
| BstEII | GGTNACC | 1 cut(s) | 496 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 35, 432 |
| BstF5I | GGATG | 4 cut(s) | 280, 301, 494, 649 |
| BstFNI | CGCG | 1 cut(s) | 27 |
| BstKTI | GATC | 4 cut(s) | 196, 270, 667, 778 |
| BstMAI | GTCTC | 1 cut(s) | 416 |
| BstMBI | GATC | 4 cut(s) | 193, 267, 664, 775 |
| BstMCI | CGRYCG | 3 cut(s) | 196, 452, 652 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 533, 808 |
| BstNI | CCWGG | 1 cut(s) | 348 |
| BstNSI | RCATGY | 1 cut(s) | 360 |
| BstPI | GGTNACC | 1 cut(s) | 496 |
| BstSCI | CCNGG | 2 cut(s) | 346, 756 |
| BstSFI | CTRYAG | 1 cut(s) | 147 |
| BstSLI | GKGCMC | 1 cut(s) | 743 |
| BstSNI | TACGTA | 1 cut(s) | 329 |
| BstUI | CGCG | 1 cut(s) | 27 |
| BstV2I | GAAGAC | 1 cut(s) | 266 |
| BstX2I | RGATCY | 1 cut(s) | 664 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 320, 383 |
| BstYI | RGATCY | 1 cut(s) | 664 |
| BstZI | CGGCCG | 1 cut(s) | 649 |
| BsuRI | GGCC | 7 cut(s) | 45, 312, 527, 536, 651, 741, 802 |
| BtrI | CACGTC | 1 cut(s) | 75 |
| BtsCI | GGATG | 4 cut(s) | 280, 301, 494, 649 |
| BveI | ACCTGC | 1 cut(s) | 28 |
| CaiI | CAGNNNCTG | 2 cut(s) | 235, 635 |
| Cfr10I | RCCGGY | 1 cut(s) | 500 |
| Cfr13I | GGNCC | 4 cut(s) | 373, 739, 740, 800 |
| CseI | GACGC | 2 cut(s) | 16, 433 |
| CspAI | ACCGGT | 1 cut(s) | 500 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 47, 82 |
| CviAII | CATG | 2 cut(s) | 357, 523 |
| DdeI | CTNAG | 1 cut(s) | 813 |
| DpnI | GATC | 4 cut(s) | 195, 269, 666, 777 |
| DpnII | GATC | 4 cut(s) | 193, 267, 664, 775 |
| EaeI | YGGCCR | 3 cut(s) | 525, 534, 649 |
| EagI | CGGCCG | 1 cut(s) | 649 |
| EclXI | CGGCCG | 1 cut(s) | 649 |
| Eco105I | TACGTA | 1 cut(s) | 329 |
| Eco24I | GRGCYC | 2 cut(s) | 58, 743 |
| Eco47I | GGWCC | 1 cut(s) | 373 |
| Eco52I | CGGCCG | 1 cut(s) | 649 |
| Eco88I | CYCGRG | 1 cut(s) | 782 |
| Eco91I | GGTNACC | 1 cut(s) | 496 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 35, 432 |
| EcoO109I | RGGNCCY | 2 cut(s) | 739, 740 |
| EcoO65I | GGTNACC | 1 cut(s) | 496 |
| EcoRII | CCWGG | 1 cut(s) | 346 |
| EcoT38I | GRGCYC | 2 cut(s) | 58, 743 |
| Esp3I | CGTCTC | 1 cut(s) | 416 |
| FaeI | CATG | 2 cut(s) | 360, 526 |
| FaiI | YATR | 7 cut(s) | 20, 22, 116, 249, 358, 442, 524 |
| FaqI | GGGAC | 3 cut(s) | 529, 604, 740 |
| FatI | CATG | 2 cut(s) | 356, 522 |
| FauI | CCCGC | 1 cut(s) | 689 |
| FbaI | TGATCA | 1 cut(s) | 267 |
| FblI | GTMKAC | 1 cut(s) | 279 |
| Fnu4HI | GCNGC | 2 cut(s) | 363, 537 |
| FokI | GGATG | 4 cut(s) | 287, 308, 501, 656 |
| FriOI | GRGCYC | 2 cut(s) | 58, 743 |
| Fsp4HI | GCNGC | 2 cut(s) | 363, 537 |
| FspBI | CTAG | 4 cut(s) | 380, 429, 668, 731 |
| GluI | GCNGC | 2 cut(s) | 363, 537 |
| GsaI | CCCAGC | 1 cut(s) | 403 |
| GsuI | CTGGAG | 2 cut(s) | 17, 257 |
| HaeIII | GGCC | 7 cut(s) | 45, 312, 527, 536, 651, 741, 802 |
| HapII | CCGG | 3 cut(s) | 368, 501, 758 |
| HgaI | GACGC | 2 cut(s) | 16, 433 |
| Hin1I | GRCGYC | 1 cut(s) | 425 |
| Hin1II | CATG | 2 cut(s) | 360, 526 |
| HinfI | GANTC | 3 cut(s) | 182, 232, 780 |
| HpaII | CCGG | 3 cut(s) | 368, 501, 758 |
| HphI | GGTGA | 3 cut(s) | 277, 311, 772 |
| Hpy166II | GTNNAC | 5 cut(s) | 69, 280, 302, 354, 446 |
| Hpy188I | TCNGA | 3 cut(s) | 134, 231, 290 |
| Hpy188III | TCNNGA | 4 cut(s) | 191, 218, 236, 435 |
| Hpy8I | GTNNAC | 5 cut(s) | 69, 280, 302, 354, 446 |
| Hpy99I | CGWCG | 1 cut(s) | 76 |
| HpyAV | CCTTC | 3 cut(s) | 167, 479, 559 |
| HpyCH4III | ACNGT | 1 cut(s) | 265 |
| HpyCH4IV | ACGT | 2 cut(s) | 74, 328 |
| HpyCH4V | TGCA | 3 cut(s) | 94, 149, 604 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 533, 808 |
| HpyF3I | CTNAG | 1 cut(s) | 813 |
| HpySE526I | ACGT | 2 cut(s) | 74, 328 |
| Hsp92I | GRCGYC | 1 cut(s) | 425 |
| Hsp92II | CATG | 2 cut(s) | 360, 526 |
| Ksp22I | TGATCA | 1 cut(s) | 267 |
| Kzo9I | GATC | 4 cut(s) | 193, 267, 664, 775 |
| LmnI | GCTCC | 1 cut(s) | 396 |
| LweI | GCATC | 1 cut(s) | 480 |
| MaeI | CTAG | 4 cut(s) | 380, 429, 668, 731 |
| MaeII | ACGT | 2 cut(s) | 74, 328 |
| MaeIII | GTNAC | 3 cut(s) | 324, 496, 511 |
| MalI | GATC | 4 cut(s) | 195, 269, 666, 777 |
| MbiI | CCGCTC | 1 cut(s) | 539 |
| MboI | GATC | 4 cut(s) | 193, 267, 664, 775 |
| MboII | GAAGA | 3 cut(s) | 122, 271, 581 |
| MflI | RGATCY | 1 cut(s) | 664 |
| MhlI | GDGCHC | 2 cut(s) | 58, 743 |
| MluCI | AATT | 3 cut(s) | 584, 608, 768 |
| MlyI | GAGTC | 1 cut(s) | 774 |
| MmeI | TCCRAC | 1 cut(s) | 396 |
| MseI | TTAA | 5 cut(s) | 306, 456, 611, 639, 771 |
| MspI | CCGG | 3 cut(s) | 368, 501, 758 |
| MspR9I | CCNGG | 2 cut(s) | 348, 758 |
| MvaI | CCWGG | 1 cut(s) | 348 |
| MvnI | CGCG | 1 cut(s) | 27 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 533, 808 |
| NciI | CCSGG | 1 cut(s) | 758 |
| NdeII | GATC | 4 cut(s) | 193, 267, 664, 775 |
| NlaIII | CATG | 2 cut(s) | 360, 526 |
| NlaIV | GGNNCC | 3 cut(s) | 366, 741, 742 |
| NmeAIII | GCCGAG | 1 cut(s) | 553 |
| NmuCI | GTSAC | 1 cut(s) | 511 |
| NspI | RCATGY | 1 cut(s) | 360 |
| NspV | TTCGAA | 1 cut(s) | 713 |
| PciI | ACATGT | 1 cut(s) | 356 |
| PfeI | GAWTC | 2 cut(s) | 182, 232 |
| PinAI | ACCGGT | 1 cut(s) | 500 |
| PkrI | GCNGC | 2 cut(s) | 364, 538 |
| Ple19I | CGATCG | 1 cut(s) | 196 |
| PleI | GAGTC | 1 cut(s) | 774 |
| PpsI | GAGTC | 1 cut(s) | 774 |
| Ppu21I | YACGTR | 1 cut(s) | 329 |
| PscI | ACATGT | 1 cut(s) | 356 |
| Psp6I | CCWGG | 1 cut(s) | 346 |
| PspEI | GGTNACC | 1 cut(s) | 496 |
| PspFI | CCCAGC | 1 cut(s) | 399 |
| PspGI | CCWGG | 1 cut(s) | 346 |
| PspN4I | GGNNCC | 3 cut(s) | 366, 741, 742 |
| PspOMI | GGGCCC | 1 cut(s) | 739 |
| PspPI | GGNCC | 4 cut(s) | 373, 739, 740, 800 |
| PstI | CTGCAG | 1 cut(s) | 151 |
| PstNI | CAGNNNCTG | 2 cut(s) | 235, 635 |
| PsuI | RGATCY | 1 cut(s) | 664 |
| PvuI | CGATCG | 1 cut(s) | 196 |
| SaqAI | TTAA | 5 cut(s) | 306, 456, 611, 639, 771 |
| SatI | GCNGC | 2 cut(s) | 363, 537 |
| Sau3AI | GATC | 4 cut(s) | 193, 267, 664, 775 |
| Sau96I | GGNCC | 4 cut(s) | 373, 739, 740, 800 |
| SchI | GAGTC | 1 cut(s) | 774 |
| ScrFI | CCNGG | 2 cut(s) | 348, 758 |
| SduI | GDGCHC | 2 cut(s) | 58, 743 |
| SfaNI | GCATC | 1 cut(s) | 480 |
| SfcI | CTRYAG | 1 cut(s) | 147 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 533 |
| SfuI | TTCGAA | 1 cut(s) | 713 |
| SinI | GGWCC | 1 cut(s) | 373 |
| SmlI | CTYRAG | 1 cut(s) | 57 |
| SmoI | CTYRAG | 1 cut(s) | 57 |
| SnaBI | TACGTA | 1 cut(s) | 329 |
| Sse9I | AATT | 3 cut(s) | 584, 608, 768 |
| SsiI | CCGC | 7 cut(s) | 25, 362, 394, 463, 494, 537, 696 |
| SspMI | CTAG | 4 cut(s) | 380, 429, 668, 731 |
| StyD4I | CCNGG | 2 cut(s) | 346, 756 |
| TaaI | ACNGT | 1 cut(s) | 265 |
| TaiI | ACGT | 2 cut(s) | 77, 331 |
| TaqI | TCGA | 4 cut(s) | 108, 563, 713, 778 |
| TaqII | GACCGA | 1 cut(s) | 466 |
| TasI | AATT | 3 cut(s) | 584, 608, 768 |
| TauI | GCSGC | 2 cut(s) | 365, 539 |
| TfiI | GAWTC | 2 cut(s) | 182, 232 |
| Tru1I | TTAA | 5 cut(s) | 306, 456, 611, 639, 771 |
| Tru9I | TTAA | 5 cut(s) | 306, 456, 611, 639, 771 |
| TseFI | GTSAC | 1 cut(s) | 511 |
| Tsp45I | GTSAC | 1 cut(s) | 511 |
| VpaK11BI | GGWCC | 1 cut(s) | 373 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 35, 432 |
| XceI | RCATGY | 1 cut(s) | 360 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 348 |
| XmiI | GTMKAC | 1 cut(s) | 279 |
| XspI | CTAG | 4 cut(s) | 380, 429, 668, 731 |