ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 130 - 177 | 2.9e-12 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 310 |
| Acc16I | TGCGCA | 1 cut(s) | 96 |
| Acc36I | ACCTGC | 1 cut(s) | 310 |
| AciI | CCGC | 3 cut(s) | 965, 1123, 1126 |
| AclWI | GGATC | 1 cut(s) | 573 |
| AcsI | RAATTY | 3 cut(s) | 69, 160, 280 |
| AcuI | CTGAAG | 2 cut(s) | 615, 1281 |
| AfaI | GTAC | 2 cut(s) | 264, 418 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 440, 1125, 1264 |
| AgsI | TTSAA | 3 cut(s) | 860, 1108, 1230 |
| AjnI | CCWGG | 1 cut(s) | 433 |
| AluBI | AGCT | 5 cut(s) | 49, 366, 538, 1056, 1282 |
| AluI | AGCT | 5 cut(s) | 49, 366, 538, 1056, 1282 |
| Alw21I | GWGCWC | 2 cut(s) | 1024, 1058 |
| Alw26I | GTCTC | 1 cut(s) | 880 |
| Alw44I | GTGCAC | 1 cut(s) | 1020 |
| AlwI | GGATC | 1 cut(s) | 573 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 215 |
| Ama87I | CYCGRG | 1 cut(s) | 877 |
| AoxI | GGCC | 2 cut(s) | 1116, 1284 |
| ApaLI | GTGCAC | 1 cut(s) | 1020 |
| ApeKI | GCWGC | 2 cut(s) | 92, 97 |
| ApoI | RAATTY | 3 cut(s) | 69, 160, 280 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 617 |
| AspLEI | GCGC | 1 cut(s) | 97 |
| AspS9I | GGNCC | 3 cut(s) | 37, 1117, 1285 |
| AsuHPI | GGTGA | 6 cut(s) | 362, 662, 697, 842, 1123, 1249 |
| AsuII | TTCGAA | 2 cut(s) | 67, 547 |
| AvaI | CYCGRG | 1 cut(s) | 877 |
| AvaII | GGWCC | 1 cut(s) | 37 |
| BaeGI | GKGCMC | 1 cut(s) | 1024 |
| BanII | GRGCYC | 1 cut(s) | 1058 |
| Bbv12I | GWGCWC | 2 cut(s) | 1024, 1058 |
| BbvCI | CCTCAGC | 1 cut(s) | 294 |
| BbvI | GCAGC | 2 cut(s) | 79, 109 |
| BccI | CCATC | 5 cut(s) | 382, 647, 716, 720, 1108 |
| BciT130I | CCWGG | 1 cut(s) | 435 |
| BciVI | GTATCC | 1 cut(s) | 1265 |
| BclI | TGATCA | 1 cut(s) | 844 |
| BcoDI | GTCTC | 1 cut(s) | 880 |
| BfaI | CTAG | 6 cut(s) | 50, 57, 519, 539, 675, 1294 |
| BfuAI | ACCTGC | 1 cut(s) | 310 |
| BfuI | GTATCC | 1 cut(s) | 1265 |
| BisI | GCNGC | 3 cut(s) | 93, 98, 1124 |
| BlsI | GCNGC | 3 cut(s) | 94, 99, 1125 |
| Bme1390I | CCNGG | 1 cut(s) | 435 |
| Bme18I | GGWCC | 1 cut(s) | 37 |
| BmeT110I | CYCGRG | 1 cut(s) | 877 |
| BmgT120I | GGNCC | 3 cut(s) | 37, 1117, 1285 |
| BmiI | GGNNCC | 2 cut(s) | 153, 1212 |
| BmrFI | CCNGG | 1 cut(s) | 435 |
| BmsI | GCATC | 4 cut(s) | 520, 793, 888, 1230 |
| BoxI | GACNNNNGTC | 1 cut(s) | 35 |
| Bpu10I | CCTNAGC | 1 cut(s) | 294 |
| Bpu14I | TTCGAA | 2 cut(s) | 67, 547 |
| BpuEI | CTTGAG | 1 cut(s) | 347 |
| BsaI | GGTCTC | 1 cut(s) | 880 |
| BsaJI | CCNNGG | 3 cut(s) | 155, 434, 940 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 615, 645, 652, 682, 775, 805 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 440, 1125, 1264 |
| Bse3DI | GCAATG | 1 cut(s) | 752 |
| BseBI | CCWGG | 1 cut(s) | 435 |
| BseDI | CCNNGG | 3 cut(s) | 155, 434, 940 |
| BseGI | GGATG | 5 cut(s) | 393, 511, 731, 808, 1162 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 440, 1125, 1264 |
| BseMI | GCAATG | 1 cut(s) | 752 |
| BseMII | CTCAG | 6 cut(s) | 185, 285, 471, 1071, 1167, 1239 |
| BseRI | GAGGAG | 1 cut(s) | 575 |
| BseSI | GKGCMC | 1 cut(s) | 1024 |
| BseXI | GCAGC | 2 cut(s) | 79, 109 |
| BseYI | CCCAGC | 1 cut(s) | 1119 |
| BsgI | GTGCAG | 1 cut(s) | 1293 |
| BshFI | GGCC | 2 cut(s) | 1118, 1286 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1024, 1058 |
| BsiHKCI | CYCGRG | 1 cut(s) | 877 |
| BslFI | GGGAC | 2 cut(s) | 43, 206 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 440, 1125, 1264 |
| BsmAI | GTCTC | 1 cut(s) | 880 |
| BsmFI | GGGAC | 2 cut(s) | 43, 206 |
| BsnI | GGCC | 2 cut(s) | 1118, 1286 |
| Bso31I | GGTCTC | 1 cut(s) | 880 |
| BsoBI | CYCGRG | 1 cut(s) | 877 |
| Bsp119I | TTCGAA | 2 cut(s) | 67, 547 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1024, 1058 |
| Bsp143I | GATC | 2 cut(s) | 565, 844 |
| Bsp19I | CCATGG | 2 cut(s) | 155, 940 |
| BspACI | CCGC | 3 cut(s) | 965, 1123, 1126 |
| BspANI | GGCC | 2 cut(s) | 1118, 1286 |
| BspCNI | CTCAG | 6 cut(s) | 186, 286, 472, 1070, 1168, 1240 |
| BspLI | GGNNCC | 2 cut(s) | 153, 1212 |
| BspMI | ACCTGC | 1 cut(s) | 310 |
| BspPI | GGATC | 1 cut(s) | 573 |
| BspT104I | TTCGAA | 2 cut(s) | 67, 547 |
| BspTNI | GGTCTC | 1 cut(s) | 880 |
| BsrDI | GCAATG | 1 cut(s) | 752 |
| BssECI | CCNNGG | 3 cut(s) | 155, 434, 940 |
| BssMI | GATC | 2 cut(s) | 565, 844 |
| BssT1I | CCWWGG | 2 cut(s) | 155, 940 |
| Bst2UI | CCWGG | 1 cut(s) | 435 |
| Bst4CI | ACNGT | 5 cut(s) | 267, 273, 421, 525, 618 |
| Bst6I | CTCTTC | 2 cut(s) | 195, 1082 |
| BstBI | TTCGAA | 2 cut(s) | 67, 547 |
| BstC8I | GCNNGC | 1 cut(s) | 1284 |
| BstDEI | CTNAG | 8 cut(s) | 194, 294, 410, 426, 480, 1057, 1176, 1248 |
| BstDSI | CCRYGG | 2 cut(s) | 155, 940 |
| BstF5I | GGATG | 5 cut(s) | 393, 511, 731, 808, 1162 |
| BstHHI | GCGC | 1 cut(s) | 97 |
| BstKTI | GATC | 2 cut(s) | 568, 847 |
| BstMAI | GTCTC | 1 cut(s) | 880 |
| BstMBI | GATC | 2 cut(s) | 565, 844 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 89 |
| BstNI | CCWGG | 1 cut(s) | 435 |
| BstNSI | RCATGY | 1 cut(s) | 905 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 35 |
| BstSCI | CCNGG | 1 cut(s) | 433 |
| BstSLI | GKGCMC | 1 cut(s) | 1024 |
| BstV1I | GCAGC | 2 cut(s) | 79, 109 |
| BsuI | GTATCC | 1 cut(s) | 1265 |
| BsuRI | GGCC | 2 cut(s) | 1118, 1286 |
| BtgI | CCRYGG | 2 cut(s) | 155, 940 |
| BtsCI | GGATG | 5 cut(s) | 393, 511, 731, 808, 1162 |
| BveI | ACCTGC | 1 cut(s) | 310 |
| Cac8I | GCNNGC | 1 cut(s) | 1284 |
| CaiI | CAGNNNCTG | 1 cut(s) | 215 |
| CfoI | GCGC | 1 cut(s) | 97 |
| Cfr13I | GGNCC | 3 cut(s) | 37, 1117, 1285 |
| Csp6I | GTAC | 2 cut(s) | 263, 417 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 66, 101 |
| CviAII | CATG | 7 cut(s) | 156, 257, 608, 795, 902, 941, 1207 |
| CviQI | GTAC | 2 cut(s) | 263, 417 |
| DdeI | CTNAG | 8 cut(s) | 194, 294, 410, 426, 480, 1057, 1176, 1248 |
| DpnI | GATC | 2 cut(s) | 567, 846 |
| DpnII | GATC | 2 cut(s) | 565, 844 |
| Eam1104I | CTCTTC | 2 cut(s) | 195, 1082 |
| EarI | CTCTTC | 2 cut(s) | 195, 1082 |
| EciI | GGCGGA | 2 cut(s) | 980, 1141 |
| Ecl136II | GAGCTC | 1 cut(s) | 1056 |
| Eco130I | CCWWGG | 2 cut(s) | 155, 940 |
| Eco24I | GRGCYC | 1 cut(s) | 1058 |
| Eco31I | GGTCTC | 1 cut(s) | 880 |
| Eco47I | GGWCC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 1 cut(s) | 1056 |
| Eco57I | CTGAAG | 2 cut(s) | 615, 1281 |
| Eco88I | CYCGRG | 1 cut(s) | 877 |
| EcoICRI | GAGCTC | 1 cut(s) | 1056 |
| EcoRI | GAATTC | 1 cut(s) | 69 |
| EcoRII | CCWGG | 1 cut(s) | 433 |
| EcoT14I | CCWWGG | 2 cut(s) | 155, 940 |
| EcoT22I | ATGCAT | 2 cut(s) | 609, 903 |
| EcoT38I | GRGCYC | 1 cut(s) | 1058 |
| ErhI | CCWWGG | 2 cut(s) | 155, 940 |
| FaeI | CATG | 7 cut(s) | 159, 260, 611, 798, 905, 944, 1210 |
| FaqI | GGGAC | 2 cut(s) | 43, 206 |
| FatI | CATG | 7 cut(s) | 155, 256, 607, 794, 901, 940, 1206 |
| FbaI | TGATCA | 1 cut(s) | 844 |
| Fnu4HI | GCNGC | 3 cut(s) | 93, 98, 1124 |
| FokI | GGATG | 5 cut(s) | 400, 498, 738, 815, 1169 |
| FriOI | GRGCYC | 1 cut(s) | 1058 |
| Fsp4HI | GCNGC | 3 cut(s) | 93, 98, 1124 |
| FspBI | CTAG | 6 cut(s) | 50, 57, 519, 539, 675, 1294 |
| FspI | TGCGCA | 1 cut(s) | 96 |
| GlaI | GCGC | 1 cut(s) | 96 |
| GluI | GCNGC | 3 cut(s) | 93, 98, 1124 |
| GsaI | CCCAGC | 1 cut(s) | 1123 |
| HaeIII | GGCC | 2 cut(s) | 1118, 1286 |
| HhaI | GCGC | 1 cut(s) | 97 |
| Hin1II | CATG | 7 cut(s) | 159, 260, 611, 798, 905, 944, 1210 |
| Hin6I | GCGC | 1 cut(s) | 95 |
| HinP1I | GCGC | 1 cut(s) | 95 |
| HinfI | GANTC | 2 cut(s) | 544, 986 |
| HphI | GGTGA | 6 cut(s) | 362, 662, 697, 842, 1123, 1249 |
| Hpy166II | GTNNAC | 3 cut(s) | 457, 833, 1022 |
| Hpy188I | TCNGA | 7 cut(s) | 117, 195, 286, 387, 623, 1060, 1249 |
| Hpy188III | TCNNGA | 1 cut(s) | 491 |
| Hpy8I | GTNNAC | 3 cut(s) | 457, 833, 1022 |
| HpyAV | CCTTC | 5 cut(s) | 550, 1055, 1067, 1102, 1228 |
| HpyCH4III | ACNGT | 5 cut(s) | 267, 273, 421, 525, 618 |
| HpyCH4IV | ACGT | 2 cut(s) | 236, 643 |
| HpyCH4V | TGCA | 9 cut(s) | 250, 256, 607, 798, 806, 854, 901, 1022, 1274 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 89 |
| HpyF3I | CTNAG | 8 cut(s) | 194, 294, 410, 426, 480, 1057, 1176, 1248 |
| HpySE526I | ACGT | 2 cut(s) | 236, 643 |
| Hsp92II | CATG | 7 cut(s) | 159, 260, 611, 798, 905, 944, 1210 |
| HspAI | GCGC | 1 cut(s) | 95 |
| Ksp22I | TGATCA | 1 cut(s) | 844 |
| Kzo9I | GATC | 2 cut(s) | 565, 844 |
| LmnI | GCTCC | 5 cut(s) | 46, 151, 363, 1053, 1210 |
| Lsp1109I | GCAGC | 2 cut(s) | 79, 109 |
| LweI | GCATC | 4 cut(s) | 520, 793, 888, 1230 |
| MaeI | CTAG | 6 cut(s) | 50, 57, 519, 539, 675, 1294 |
| MaeII | ACGT | 2 cut(s) | 236, 643 |
| MaeIII | GTNAC | 4 cut(s) | 211, 267, 818, 1165 |
| MalI | GATC | 2 cut(s) | 567, 846 |
| MboI | GATC | 2 cut(s) | 565, 844 |
| MboII | GAAGA | 6 cut(s) | 212, 780, 995, 1099, 1172, 1218 |
| MfeI | CAATTG | 1 cut(s) | 855 |
| MhlI | GDGCHC | 2 cut(s) | 1024, 1058 |
| MluCI | AATT | 5 cut(s) | 69, 160, 280, 504, 855 |
| MmeI | TCCRAC | 2 cut(s) | 421, 539 |
| Mph1103I | ATGCAT | 2 cut(s) | 609, 903 |
| MroXI | GAANNNNTTC | 1 cut(s) | 617 |
| MseI | TTAA | 3 cut(s) | 371, 906, 923 |
| MslI | CAYNNNNRTG | 2 cut(s) | 305, 825 |
| MspA1I | CMGCKG | 1 cut(s) | 1123 |
| MspR9I | CCNGG | 1 cut(s) | 435 |
| MunI | CAATTG | 1 cut(s) | 855 |
| MvaI | CCWGG | 1 cut(s) | 435 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 89 |
| NcoI | CCATGG | 2 cut(s) | 155, 940 |
| NdeII | GATC | 2 cut(s) | 565, 844 |
| NlaIII | CATG | 7 cut(s) | 159, 260, 611, 798, 905, 944, 1210 |
| NlaIV | GGNNCC | 2 cut(s) | 153, 1212 |
| NmuCI | GTSAC | 2 cut(s) | 818, 1165 |
| NsbI | TGCGCA | 1 cut(s) | 96 |
| NsiI | ATGCAT | 2 cut(s) | 609, 903 |
| NspI | RCATGY | 1 cut(s) | 905 |
| NspV | TTCGAA | 2 cut(s) | 67, 547 |
| PaqCI | CACCTGC | 1 cut(s) | 310 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 574 |
| PdmI | GAANNNNTTC | 1 cut(s) | 617 |
| PfeI | GAWTC | 2 cut(s) | 544, 986 |
| PkrI | GCNGC | 3 cut(s) | 94, 99, 1125 |
| PshAI | GACNNNNGTC | 1 cut(s) | 35 |
| Psp124BI | GAGCTC | 1 cut(s) | 1058 |
| Psp6I | CCWGG | 1 cut(s) | 433 |
| PspFI | CCCAGC | 1 cut(s) | 1119 |
| PspGI | CCWGG | 1 cut(s) | 433 |
| PspN4I | GGNNCC | 2 cut(s) | 153, 1212 |
| PspPI | GGNCC | 3 cut(s) | 37, 1117, 1285 |
| PstNI | CAGNNNCTG | 1 cut(s) | 215 |
| RsaI | GTAC | 2 cut(s) | 264, 418 |
| RsaNI | GTAC | 2 cut(s) | 263, 417 |
| RseI | CAYNNNNRTG | 2 cut(s) | 305, 825 |
| SacI | GAGCTC | 1 cut(s) | 1058 |
| SaqAI | TTAA | 3 cut(s) | 371, 906, 923 |
| SatI | GCNGC | 3 cut(s) | 93, 98, 1124 |
| Sau3AI | GATC | 2 cut(s) | 565, 844 |
| Sau96I | GGNCC | 3 cut(s) | 37, 1117, 1285 |
| ScrFI | CCNGG | 1 cut(s) | 435 |
| SduI | GDGCHC | 2 cut(s) | 1024, 1058 |
| SfaNI | GCATC | 4 cut(s) | 520, 793, 888, 1230 |
| SfuI | TTCGAA | 2 cut(s) | 67, 547 |
| SinI | GGWCC | 1 cut(s) | 37 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 305, 825 |
| SmlI | CTYRAG | 1 cut(s) | 326 |
| SmoI | CTYRAG | 1 cut(s) | 326 |
| Sse9I | AATT | 5 cut(s) | 69, 160, 280, 504, 855 |
| SsiI | CCGC | 3 cut(s) | 965, 1123, 1126 |
| SspI | AATATT | 1 cut(s) | 110 |
| SspMI | CTAG | 6 cut(s) | 50, 57, 519, 539, 675, 1294 |
| SstI | GAGCTC | 1 cut(s) | 1058 |
| StyD4I | CCNGG | 1 cut(s) | 433 |
| StyI | CCWWGG | 2 cut(s) | 155, 940 |
| TaaI | ACNGT | 5 cut(s) | 267, 273, 421, 525, 618 |
| TaiI | ACGT | 2 cut(s) | 239, 646 |
| TaqI | TCGA | 7 cut(s) | 67, 73, 277, 547, 600, 824, 1096 |
| TasI | AATT | 5 cut(s) | 69, 160, 280, 504, 855 |
| TauI | GCSGC | 1 cut(s) | 1126 |
| TfiI | GAWTC | 2 cut(s) | 544, 986 |
| Tru1I | TTAA | 3 cut(s) | 371, 906, 923 |
| Tru9I | TTAA | 3 cut(s) | 371, 906, 923 |
| TseFI | GTSAC | 2 cut(s) | 818, 1165 |
| TseI | GCWGC | 2 cut(s) | 92, 97 |
| Tsp45I | GTSAC | 2 cut(s) | 818, 1165 |
| TspDTI | ATGAA | 3 cut(s) | 483, 941, 1173 |
| TspGWI | ACGGA | 2 cut(s) | 59, 134 |
| VneI | GTGCAC | 1 cut(s) | 1020 |
| VpaK11BI | GGWCC | 1 cut(s) | 37 |
| XapI | RAATTY | 3 cut(s) | 69, 160, 280 |
| XceI | RCATGY | 1 cut(s) | 905 |
| XmnI | GAANNNNTTC | 1 cut(s) | 617 |
| XspI | CTAG | 6 cut(s) | 50, 57, 519, 539, 675, 1294 |
| Zsp2I | ATGCAT | 2 cut(s) | 609, 903 |